Isodon japonicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_067782.1 · 11–84 bp · −
psbA · NC_067782.1 · 317–1,375 bp · −
trnK-UUU · NC_067782.1 · 1,606–4,187 bp · −
matK · NC_067782.1 · 1,927–3,447 bp · −
rps16 · NC_067782.1 · 4,725–5,866 bp · −
trnQ-UUG · NC_067782.1 · 6,719–6,790 bp · −
trnS-GCU · NC_067782.1 · 7,888–7,975 bp · −
atpA · NC_067782.1 · 9,767–11,290 bp · −
atpF · NC_067782.1 · 11,390–12,637 bp · −
atpH · NC_067782.1 · 12,929–13,174 bp · −
atpI · NC_067782.1 · 14,118–14,861 bp · −
rps2 · NC_067782.1 · 15,087–15,797 bp · −
rpoC2 · NC_067782.1 · 16,011–20,186 bp · −
rpoC1 · NC_067782.1 · 20,363–23,203 bp · −
rpoB · NC_067782.1 · 23,230–26,442 bp · −
psbM · NC_067782.1 · 28,954–29,058 bp · −
trnD-GUC · NC_067782.1 · 29,577–29,650 bp · −
trnY-GUA · NC_067782.1 · 29,761–29,844 bp · −
trnE-UUC · NC_067782.1 · 29,922–29,994 bp · −
trnS-UGA · NC_067782.1 · 34,692–34,784 bp · −
trnM-CAU · NC_067782.1 · 35,792–35,865 bp · −
rps14 · NC_067782.1 · 36,010–36,312 bp · −
psaB · NC_067782.1 · 36,435–38,639 bp · −
psaA · NC_067782.1 · 38,665–40,917 bp · −
ycf3 · NC_067782.1 · 41,710–43,671 bp · −
rps4 · NC_067782.1 · 44,891–45,496 bp · −
trnT-UGU · NC_067782.1 · 45,940–46,012 bp · −
ndhJ · NC_067782.1 · 48,298–48,774 bp · −
ndhK · NC_067782.1 · 48,885–49,562 bp · −
ndhC · NC_067782.1 · 49,614–49,976 bp · −
atpE · NC_067782.1 · 52,048–52,449 bp · −
atpB · NC_067782.1 · 52,446–53,942 bp · −
psbJ · NC_067782.1 · 63,617–63,739 bp · −
psbL · NC_067782.1 · 63,874–63,990 bp · −
psbF · NC_067782.1 · 64,014–64,133 bp · −
psbE · NC_067782.1 · 64,148–64,399 bp · −
trnW-CCA · NC_067782.1 · 65,799–65,872 bp · −
trnP-UGG · NC_067782.1 · 66,042–66,115 bp · −
rpl20 · NC_067782.1 · 67,894–68,280 bp · −
rps12 · NC_067782.1 · 69,012–69,125 bp · −
rps12 · NC_067782.1 · 96,408–97,201 bp · −
clpP · NC_067782.1 · 69,244–71,165 bp · −
psbN · NC_067782.1 · 73,515–73,646 bp · −
rpoA · NC_067782.1 · 77,043–78,050 bp · −
rps11 · NC_067782.1 · 78,122–78,538 bp · −
rpl36 · NC_067782.1 · 78,648–78,761 bp · −
infA · NC_067782.1 · 78,857–79,090 bp · −
rps8 · NC_067782.1 · 79,215–79,619 bp · −
rpl14 · NC_067782.1 · 79,793–80,161 bp · −
rpl16 · NC_067782.1 · 80,299–81,566 bp · −
rps3 · NC_067782.1 · 81,719–82,381 bp · −
rpl22 · NC_067782.1 · 82,366–82,839 bp · −
rps19 · NC_067782.1 · 82,904–83,182 bp · −
rpl2 · NC_067782.1 · 83,251–84,729 bp · −
rpl23 · NC_067782.1 · 84,748–85,029 bp · −
trnI-CAU · NC_067782.1 · 85,195–85,268 bp · −
trnL-CAA · NC_067782.1 · 92,766–92,846 bp · −
ndhB · NC_067782.1 · 93,409–95,616 bp · −
rps7 · NC_067782.1 · 95,887–96,354 bp · −
rrn4.5 · NC_067782.1 · 105,994–106,258 bp · −
trnN-GUU · NC_067782.1 · 107,362–107,433 bp · −
ndhF · NC_067782.1 · 108,798–111,029 bp · −
ndhD · NC_067782.1 · 113,803–115,332 bp · −
psaC · NC_067782.1 · 115,423–115,668 bp · −
ndhE · NC_067782.1 · 115,924–116,229 bp · −
ndhG · NC_067782.1 · 116,444–116,974 bp · −
ndhI · NC_067782.1 · 117,343–117,849 bp · −
ndhA · NC_067782.1 · 117,930–120,039 bp · −
ndhH · NC_067782.1 · 120,041–121,222 bp · −
rps15 · NC_067782.1 · 121,337–121,600 bp · −
ycf1 · NC_067782.1 · 122,040–127,604 bp · −
trnR-ACG · NC_067782.1 · 128,589–128,662 bp · −
rrn5 · NC_067782.1 · 128,896–129,026 bp · −
rrn23 · NC_067782.1 · 129,483–132,293 bp · −
trnA-UGC · NC_067782.1 · 132,457–133,335 bp · −
trnI-GAU · NC_067782.1 · 133,400–134,418 bp · −
rrn16 · NC_067782.1 · 134,716–136,206 bp · −
trnV-GAC · NC_067782.1 · 136,433–136,504 bp · −
ycf15 · NC_067782.1 · 142,873–143,022 bp · −
ycf2 · NC_067782.1 · 143,212–150,015 bp · −
psbK · NC_067782.1 · 7,185–7,370 bp · +
psbI · NC_067782.1 · 7,761–7,871 bp · +
trnT-CGU · NC_067782.1 · 8,641–9,401 bp · +
trnR-UCU · NC_067782.1 · 9,591–9,662 bp · +
trnC-GCA · NC_067782.1 · 27,634–27,704 bp · +
petN · NC_067782.1 · 27,867–27,956 bp · +
trnT-GGU · NC_067782.1 · 30,582–30,653 bp · +
psbD · NC_067782.1 · 32,026–33,087 bp · +
psbC · NC_067782.1 · 33,035–34,456 bp · +
psbZ · NC_067782.1 · 35,125–35,313 bp · +
trnG-GCC · NC_067782.1 · 35,549–35,619 bp · +
trnS-GGA · NC_067782.1 · 44,516–44,602 bp · +
trnL-UAA · NC_067782.1 · 46,706–47,249 bp · +
trnF-GAA · NC_067782.1 · 47,549–47,621 bp · +
trnM-CAU · NC_067782.1 · 51,770–51,842 bp · +
rbcL · NC_067782.1 · 54,720–56,186 bp · +
accD · NC_067782.1 · 56,800–58,350 bp · +
psaI · NC_067782.1 · 59,049–59,159 bp · +
ycf4 · NC_067782.1 · 59,605–60,159 bp · +
cemA · NC_067782.1 · 60,745–61,434 bp · +
petA · NC_067782.1 · 61,649–62,611 bp · +
petL · NC_067782.1 · 65,293–65,388 bp · +
petG · NC_067782.1 · 65,563–65,676 bp · +
psaJ · NC_067782.1 · 66,399–66,533 bp · +
rpl33 · NC_067782.1 · 66,981–67,181 bp · +
rps18 · NC_067782.1 · 67,348–67,653 bp · +
rps12 · NC_067782.1 · 138,177–138,970 bp · +
psbB · NC_067782.1 · 71,638–73,164 bp · +
psbT · NC_067782.1 · 73,348–73,449 bp · +
psbH · NC_067782.1 · 73,757–73,975 bp · +
petB · NC_067782.1 · 74,110–75,466 bp · +
petD · NC_067782.1 · 75,655–76,866 bp · +
ycf2 · NC_067782.1 · 85,363–92,166 bp · +
ycf15 · NC_067782.1 · 92,356–92,505 bp · +
trnV-GAC · NC_067782.1 · 98,874–98,945 bp · +
rrn16 · NC_067782.1 · 99,172–100,662 bp · +
trnI-GAU · NC_067782.1 · 100,960–101,978 bp · +
trnA-UGC · NC_067782.1 · 102,043–102,921 bp · +
rrn23 · NC_067782.1 · 103,085–105,895 bp · +
rrn5 · NC_067782.1 · 106,352–106,482 bp · +
trnR-ACG · NC_067782.1 · 106,716–106,789 bp · +
ycf1 · NC_067782.1 · 107,774–108,904 bp · +
rpl32 · NC_067782.1 · 111,514–111,684 bp · +
trnL-UAG · NC_067782.1 · 112,441–112,520 bp · +
ccsA · NC_067782.1 · 112,608–113,579 bp · +
trnN-GUU · NC_067782.1 · 127,945–128,016 bp · +
rrn4.5 · NC_067782.1 · 129,120–129,384 bp · +
rps7 · NC_067782.1 · 139,024–139,491 bp · +
ndhB · NC_067782.1 · 139,762–141,969 bp · +
trnL-CAA · NC_067782.1 · 142,532–142,612 bp · +
trnI-CAU · NC_067782.1 · 150,110–150,183 bp · +
rpl23 · NC_067782.1 · 150,349–150,630 bp · +
rpl2 · NC_067782.1 · 150,649–152,127 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon japonicus
ANNOTATED PLASTOME
NC_067782.1
152,238 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38060 76119 114178 152238 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn4.5 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn4.5 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 317 1375 1059 Locate
trnK-UUU gene − 1606 4187 2582 Locate
matK gene − 1927 3447 1521 Locate
rps16 gene − 4725 5866 1142 Locate
trnQ-UUG gene − 6719 6790 72 Locate
psbK gene + 7185 7370 186 Locate
psbI gene + 7761 7871 111 Locate
trnS-GCU gene − 7888 7975 88 Locate
trnT-CGU gene + 8641 9401 761 Locate
trnR-UCU gene + 9591 9662 72 Locate
atpA gene − 9767 11290 1524 Locate
atpF gene − 11390 12637 1248 Locate
atpH gene − 12929 13174 246 Locate
atpI gene − 14118 14861 744 Locate
rps2 gene − 15087 15797 711 Locate
rpoC2 gene − 16011 20186 4176 Locate
rpoC1 gene − 20363 23203 2841 Locate
rpoB gene − 23230 26442 3213 Locate
trnC-GCA gene + 27634 27704 71 Locate
petN gene + 27867 27956 90 Locate
psbM gene − 28954 29058 105 Locate
trnD-GUC gene − 29577 29650 74 Locate
trnY-GUA gene − 29761 29844 84 Locate
trnE-UUC gene − 29922 29994 73 Locate
trnT-GGU gene + 30582 30653 72 Locate
psbD gene + 32026 33087 1062 Locate
psbC gene + 33035 34456 1422 Locate
trnS-UGA gene − 34692 34784 93 Locate
psbZ gene + 35125 35313 189 Locate
trnG-GCC gene + 35549 35619 71 Locate
trnM-CAU gene − 35792 35865 74 Locate
rps14 gene − 36010 36312 303 Locate
psaB gene − 36435 38639 2205 Locate
psaA gene − 38665 40917 2253 Locate
ycf3 gene − 41710 43671 1962 Locate
trnS-GGA gene + 44516 44602 87 Locate
rps4 gene − 44891 45496 606 Locate
trnT-UGU gene − 45940 46012 73 Locate
trnL-UAA gene + 46706 47249 544 Locate
trnF-GAA gene + 47549 47621 73 Locate
ndhJ gene − 48298 48774 477 Locate
ndhK gene − 48885 49562 678 Locate
ndhC gene − 49614 49976 363 Locate
trnM-CAU gene + 51770 51842 73 Locate
atpE gene − 52048 52449 402 Locate
atpB gene − 52446 53942 1497 Locate
rbcL gene + 54720 56186 1467 Locate
accD gene + 56800 58350 1551 Locate
psaI gene + 59049 59159 111 Locate
ycf4 gene + 59605 60159 555 Locate
cemA gene + 60745 61434 690 Locate
petA gene + 61649 62611 963 Locate
psbJ gene − 63617 63739 123 Locate
psbL gene − 63874 63990 117 Locate
psbF gene − 64014 64133 120 Locate
psbE gene − 64148 64399 252 Locate
petL gene + 65293 65388 96 Locate
petG gene + 65563 65676 114 Locate
trnW-CCA gene − 65799 65872 74 Locate
trnP-UGG gene − 66042 66115 74 Locate
psaJ gene + 66399 66533 135 Locate
rpl33 gene + 66981 67181 201 Locate
rps18 gene + 67348 67653 306 Locate
rpl20 gene − 67894 68280 387 Locate
rps12 gene − 69012 69125 114 Locate
clpP gene − 69244 71165 1922 Locate
psbB gene + 71638 73164 1527 Locate
psbT gene + 73348 73449 102 Locate
psbN gene − 73515 73646 132 Locate
psbH gene + 73757 73975 219 Locate
petB gene + 74110 75466 1357 Locate
petD gene + 75655 76866 1212 Locate
rpoA gene − 77043 78050 1008 Locate
rps11 gene − 78122 78538 417 Locate
rpl36 gene − 78648 78761 114 Locate
infA gene − 78857 79090 234 Locate
rps8 gene − 79215 79619 405 Locate
rpl14 gene − 79793 80161 369 Locate
rpl16 gene − 80299 81566 1268 Locate
rps3 gene − 81719 82381 663 Locate
rpl22 gene − 82366 82839 474 Locate
rps19 gene − 82904 83182 279 Locate
rpl2 gene − 83251 84729 1479 Locate
rpl23 gene − 84748 85029 282 Locate
trnI-CAU gene − 85195 85268 74 Locate
ycf2 gene + 85363 92166 6804 Locate
ycf15 gene + 92356 92505 150 Locate
trnL-CAA gene − 92766 92846 81 Locate
ndhB gene − 93409 95616 2208 Locate
rps7 gene − 95887 96354 468 Locate
rps12 gene − 96408 97201 794 Locate
trnV-GAC gene + 98874 98945 72 Locate
rrn16 gene + 99172 100662 1491 Locate
trnI-GAU gene + 100960 101978 1019 Locate
trnA-UGC gene + 102043 102921 879 Locate
rrn23 gene + 103085 105895 2811 Locate
rrn4.5 gene − 105994 106258 265 Locate
rrn5 gene + 106352 106482 131 Locate
trnR-ACG gene + 106716 106789 74 Locate
trnN-GUU gene − 107362 107433 72 Locate
ycf1 gene + 107774 108904 1131 Locate
ndhF gene − 108798 111029 2232 Locate
rpl32 gene + 111514 111684 171 Locate
trnL-UAG gene + 112441 112520 80 Locate
ccsA gene + 112608 113579 972 Locate
ndhD gene − 113803 115332 1530 Locate
psaC gene − 115423 115668 246 Locate
ndhE gene − 115924 116229 306 Locate
ndhG gene − 116444 116974 531 Locate
ndhI gene − 117343 117849 507 Locate
ndhA gene − 117930 120039 2110 Locate
ndhH gene − 120041 121222 1182 Locate
rps15 gene − 121337 121600 264 Locate
ycf1 gene − 122040 127604 5565 Locate
trnN-GUU gene + 127945 128016 72 Locate
trnR-ACG gene − 128589 128662 74 Locate
rrn5 gene − 128896 129026 131 Locate
rrn4.5 gene + 129120 129384 265 Locate
rrn23 gene − 129483 132293 2811 Locate
trnA-UGC gene − 132457 133335 879 Locate
trnI-GAU gene − 133400 134418 1019 Locate
rrn16 gene − 134716 136206 1491 Locate
trnV-GAC gene − 136433 136504 72 Locate
rps12 gene + 138177 138970 794 Locate
rps7 gene + 139024 139491 468 Locate
ndhB gene + 139762 141969 2208 Locate
trnL-CAA gene + 142532 142612 81 Locate
ycf15 gene − 142873 143022 150 Locate
ycf2 gene − 143212 150015 6804 Locate
trnI-CAU gene + 150110 150183 74 Locate
rpl23 gene + 150349 150630 282 Locate
rpl2 gene + 150649 152127 1479 Locate
Status Available
Accession NC_067782.1
Length 152,238 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources