Isodon lophanthoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_067783.1 · 11–84 bp · −
psbA · NC_067783.1 · 316–1,374 bp · −
trnK-UUU · NC_067783.1 · 1,605–4,186 bp · −
matK · NC_067783.1 · 1,926–3,446 bp · −
rps16 · NC_067783.1 · 4,724–5,865 bp · −
trnQ-UUG · NC_067783.1 · 6,711–6,782 bp · −
trnS-GCU · NC_067783.1 · 7,881–7,968 bp · −
atpA · NC_067783.1 · 9,760–11,283 bp · −
atpF · NC_067783.1 · 11,383–12,629 bp · −
atpH · NC_067783.1 · 12,921–13,166 bp · −
atpI · NC_067783.1 · 14,111–14,854 bp · −
rps2 · NC_067783.1 · 15,080–15,790 bp · −
rpoC2 · NC_067783.1 · 16,004–20,179 bp · −
rpoC1 · NC_067783.1 · 20,356–23,204 bp · −
rpoB · NC_067783.1 · 23,231–26,443 bp · −
psbM · NC_067783.1 · 28,955–29,059 bp · −
trnD-GUC · NC_067783.1 · 29,578–29,651 bp · −
trnY-GUA · NC_067783.1 · 29,762–29,845 bp · −
trnE-UUC · NC_067783.1 · 29,923–29,995 bp · −
trnS-UGA · NC_067783.1 · 34,688–34,780 bp · −
trnM-CAU · NC_067783.1 · 35,789–35,862 bp · −
rps14 · NC_067783.1 · 36,007–36,309 bp · −
psaB · NC_067783.1 · 36,432–38,636 bp · −
psaA · NC_067783.1 · 38,662–40,914 bp · −
ycf3 · NC_067783.1 · 41,715–43,676 bp · −
rps4 · NC_067783.1 · 44,881–45,486 bp · −
trnT-UGU · NC_067783.1 · 45,900–45,972 bp · −
ndhJ · NC_067783.1 · 48,265–48,741 bp · −
ndhK · NC_067783.1 · 48,852–49,529 bp · −
ndhC · NC_067783.1 · 49,581–49,943 bp · −
atpE · NC_067783.1 · 52,014–52,415 bp · −
atpB · NC_067783.1 · 52,412–53,908 bp · −
psbJ · NC_067783.1 · 63,583–63,705 bp · −
psbL · NC_067783.1 · 63,840–63,956 bp · −
psbF · NC_067783.1 · 63,980–64,099 bp · −
psbE · NC_067783.1 · 64,114–64,365 bp · −
trnW-CCA · NC_067783.1 · 65,765–65,838 bp · −
trnP-UGG · NC_067783.1 · 66,008–66,081 bp · −
rpl20 · NC_067783.1 · 67,854–68,240 bp · −
rps12 · NC_067783.1 · 68,972–69,085 bp · −
rps12 · NC_067783.1 · 96,348–97,141 bp · −
clpP · NC_067783.1 · 69,204–71,125 bp · −
psbN · NC_067783.1 · 73,475–73,606 bp · −
rpoA · NC_067783.1 · 76,979–77,986 bp · −
rps11 · NC_067783.1 · 78,058–78,474 bp · −
rpl36 · NC_067783.1 · 78,584–78,697 bp · −
infA · NC_067783.1 · 78,793–79,026 bp · −
rps8 · NC_067783.1 · 79,156–79,560 bp · −
rpl14 · NC_067783.1 · 79,734–80,102 bp · −
rpl16 · NC_067783.1 · 80,239–81,506 bp · −
rps3 · NC_067783.1 · 81,659–82,321 bp · −
rpl22 · NC_067783.1 · 82,306–82,779 bp · −
rps19 · NC_067783.1 · 82,844–83,122 bp · −
rpl2 · NC_067783.1 · 83,191–84,669 bp · −
rpl23 · NC_067783.1 · 84,688–84,969 bp · −
trnI-CAU · NC_067783.1 · 85,135–85,208 bp · −
trnL-CAA · NC_067783.1 · 92,706–92,786 bp · −
ndhB · NC_067783.1 · 93,349–95,556 bp · −
rps7 · NC_067783.1 · 95,827–96,294 bp · −
rrn4.5 · NC_067783.1 · 105,934–106,198 bp · −
trnN-GUU · NC_067783.1 · 107,302–107,373 bp · −
ndhF · NC_067783.1 · 108,738–110,969 bp · −
ndhD · NC_067783.1 · 113,743–115,272 bp · −
psaC · NC_067783.1 · 115,363–115,608 bp · −
ndhE · NC_067783.1 · 115,864–116,169 bp · −
ndhG · NC_067783.1 · 116,390–116,920 bp · −
ndhI · NC_067783.1 · 117,289–117,795 bp · −
ndhA · NC_067783.1 · 117,876–119,985 bp · −
ndhH · NC_067783.1 · 119,987–121,168 bp · −
rps15 · NC_067783.1 · 121,283–121,546 bp · −
ycf1 · NC_067783.1 · 122,010–127,574 bp · −
trnR-ACG · NC_067783.1 · 128,559–128,632 bp · −
rrn5 · NC_067783.1 · 128,866–128,996 bp · −
rrn23 · NC_067783.1 · 129,453–132,263 bp · −
trnA-UGC · NC_067783.1 · 132,427–133,305 bp · −
trnI-GAU · NC_067783.1 · 133,370–134,388 bp · −
rrn16 · NC_067783.1 · 134,686–136,176 bp · −
trnV-GAC · NC_067783.1 · 136,403–136,474 bp · −
ycf15 · NC_067783.1 · 142,843–142,992 bp · −
ycf2 · NC_067783.1 · 143,182–149,985 bp · −
psbK · NC_067783.1 · 7,177–7,362 bp · +
psbI · NC_067783.1 · 7,754–7,864 bp · +
trnT-CGU · NC_067783.1 · 8,634–9,394 bp · +
trnR-UCU · NC_067783.1 · 9,584–9,655 bp · +
trnC-GCA · NC_067783.1 · 27,635–27,705 bp · +
petN · NC_067783.1 · 27,868–27,957 bp · +
trnT-GGU · NC_067783.1 · 30,577–30,648 bp · +
psbD · NC_067783.1 · 32,022–33,083 bp · +
psbC · NC_067783.1 · 33,031–34,452 bp · +
psbZ · NC_067783.1 · 35,121–35,309 bp · +
trnG-GCC · NC_067783.1 · 35,546–35,616 bp · +
trnS-GGA · NC_067783.1 · 44,521–44,607 bp · +
trnL-UAA · NC_067783.1 · 46,666–47,209 bp · +
trnF-GAA · NC_067783.1 · 47,509–47,581 bp · +
trnM-CAU · NC_067783.1 · 51,736–51,808 bp · +
rbcL · NC_067783.1 · 54,686–56,152 bp · +
accD · NC_067783.1 · 56,766–58,316 bp · +
psaI · NC_067783.1 · 59,014–59,124 bp · +
ycf4 · NC_067783.1 · 59,570–60,124 bp · +
cemA · NC_067783.1 · 60,710–61,399 bp · +
petA · NC_067783.1 · 61,614–62,576 bp · +
petL · NC_067783.1 · 65,259–65,354 bp · +
petG · NC_067783.1 · 65,529–65,642 bp · +
psaJ · NC_067783.1 · 66,365–66,499 bp · +
rpl33 · NC_067783.1 · 66,947–67,147 bp · +
rps18 · NC_067783.1 · 67,314–67,619 bp · +
rps12 · NC_067783.1 · 138,147–138,940 bp · +
psbB · NC_067783.1 · 71,598–73,124 bp · +
psbT · NC_067783.1 · 73,308–73,409 bp · +
psbH · NC_067783.1 · 73,712–73,930 bp · +
petB · NC_067783.1 · 74,065–75,420 bp · +
petD · NC_067783.1 · 75,609–76,802 bp · +
ycf2 · NC_067783.1 · 85,303–92,106 bp · +
ycf15 · NC_067783.1 · 92,296–92,445 bp · +
trnV-GAC · NC_067783.1 · 98,814–98,885 bp · +
rrn16 · NC_067783.1 · 99,112–100,602 bp · +
trnI-GAU · NC_067783.1 · 100,900–101,918 bp · +
trnA-UGC · NC_067783.1 · 101,983–102,861 bp · +
rrn23 · NC_067783.1 · 103,025–105,835 bp · +
rrn5 · NC_067783.1 · 106,292–106,422 bp · +
trnR-ACG · NC_067783.1 · 106,656–106,729 bp · +
ycf1 · NC_067783.1 · 107,714–108,844 bp · +
rpl32 · NC_067783.1 · 111,454–111,624 bp · +
trnL-UAG · NC_067783.1 · 112,381–112,460 bp · +
ccsA · NC_067783.1 · 112,548–113,519 bp · +
trnN-GUU · NC_067783.1 · 127,915–127,986 bp · +
rrn4.5 · NC_067783.1 · 129,090–129,354 bp · +
rps7 · NC_067783.1 · 138,994–139,461 bp · +
ndhB · NC_067783.1 · 139,732–141,939 bp · +
trnL-CAA · NC_067783.1 · 142,502–142,582 bp · +
trnI-CAU · NC_067783.1 · 150,080–150,153 bp · +
rpl23 · NC_067783.1 · 150,319–150,600 bp · +
rpl2 · NC_067783.1 · 150,619–152,097 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon lophanthoides
ANNOTATED PLASTOME
NC_067783.1
152,208 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76104 114156 152208 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn4.5 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn4.5 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 316 1374 1059 Locate
trnK-UUU gene − 1605 4186 2582 Locate
matK gene − 1926 3446 1521 Locate
rps16 gene − 4724 5865 1142 Locate
trnQ-UUG gene − 6711 6782 72 Locate
psbK gene + 7177 7362 186 Locate
psbI gene + 7754 7864 111 Locate
trnS-GCU gene − 7881 7968 88 Locate
trnT-CGU gene + 8634 9394 761 Locate
trnR-UCU gene + 9584 9655 72 Locate
atpA gene − 9760 11283 1524 Locate
atpF gene − 11383 12629 1247 Locate
atpH gene − 12921 13166 246 Locate
atpI gene − 14111 14854 744 Locate
rps2 gene − 15080 15790 711 Locate
rpoC2 gene − 16004 20179 4176 Locate
rpoC1 gene − 20356 23204 2849 Locate
rpoB gene − 23231 26443 3213 Locate
trnC-GCA gene + 27635 27705 71 Locate
petN gene + 27868 27957 90 Locate
psbM gene − 28955 29059 105 Locate
trnD-GUC gene − 29578 29651 74 Locate
trnY-GUA gene − 29762 29845 84 Locate
trnE-UUC gene − 29923 29995 73 Locate
trnT-GGU gene + 30577 30648 72 Locate
psbD gene + 32022 33083 1062 Locate
psbC gene + 33031 34452 1422 Locate
trnS-UGA gene − 34688 34780 93 Locate
psbZ gene + 35121 35309 189 Locate
trnG-GCC gene + 35546 35616 71 Locate
trnM-CAU gene − 35789 35862 74 Locate
rps14 gene − 36007 36309 303 Locate
psaB gene − 36432 38636 2205 Locate
psaA gene − 38662 40914 2253 Locate
ycf3 gene − 41715 43676 1962 Locate
trnS-GGA gene + 44521 44607 87 Locate
rps4 gene − 44881 45486 606 Locate
trnT-UGU gene − 45900 45972 73 Locate
trnL-UAA gene + 46666 47209 544 Locate
trnF-GAA gene + 47509 47581 73 Locate
ndhJ gene − 48265 48741 477 Locate
ndhK gene − 48852 49529 678 Locate
ndhC gene − 49581 49943 363 Locate
trnM-CAU gene + 51736 51808 73 Locate
atpE gene − 52014 52415 402 Locate
atpB gene − 52412 53908 1497 Locate
rbcL gene + 54686 56152 1467 Locate
accD gene + 56766 58316 1551 Locate
psaI gene + 59014 59124 111 Locate
ycf4 gene + 59570 60124 555 Locate
cemA gene + 60710 61399 690 Locate
petA gene + 61614 62576 963 Locate
psbJ gene − 63583 63705 123 Locate
psbL gene − 63840 63956 117 Locate
psbF gene − 63980 64099 120 Locate
psbE gene − 64114 64365 252 Locate
petL gene + 65259 65354 96 Locate
petG gene + 65529 65642 114 Locate
trnW-CCA gene − 65765 65838 74 Locate
trnP-UGG gene − 66008 66081 74 Locate
psaJ gene + 66365 66499 135 Locate
rpl33 gene + 66947 67147 201 Locate
rps18 gene + 67314 67619 306 Locate
rpl20 gene − 67854 68240 387 Locate
rps12 gene − 68972 69085 114 Locate
clpP gene − 69204 71125 1922 Locate
psbB gene + 71598 73124 1527 Locate
psbT gene + 73308 73409 102 Locate
psbN gene − 73475 73606 132 Locate
psbH gene + 73712 73930 219 Locate
petB gene + 74065 75420 1356 Locate
petD gene + 75609 76802 1194 Locate
rpoA gene − 76979 77986 1008 Locate
rps11 gene − 78058 78474 417 Locate
rpl36 gene − 78584 78697 114 Locate
infA gene − 78793 79026 234 Locate
rps8 gene − 79156 79560 405 Locate
rpl14 gene − 79734 80102 369 Locate
rpl16 gene − 80239 81506 1268 Locate
rps3 gene − 81659 82321 663 Locate
rpl22 gene − 82306 82779 474 Locate
rps19 gene − 82844 83122 279 Locate
rpl2 gene − 83191 84669 1479 Locate
rpl23 gene − 84688 84969 282 Locate
trnI-CAU gene − 85135 85208 74 Locate
ycf2 gene + 85303 92106 6804 Locate
ycf15 gene + 92296 92445 150 Locate
trnL-CAA gene − 92706 92786 81 Locate
ndhB gene − 93349 95556 2208 Locate
rps7 gene − 95827 96294 468 Locate
rps12 gene − 96348 97141 794 Locate
trnV-GAC gene + 98814 98885 72 Locate
rrn16 gene + 99112 100602 1491 Locate
trnI-GAU gene + 100900 101918 1019 Locate
trnA-UGC gene + 101983 102861 879 Locate
rrn23 gene + 103025 105835 2811 Locate
rrn4.5 gene − 105934 106198 265 Locate
rrn5 gene + 106292 106422 131 Locate
trnR-ACG gene + 106656 106729 74 Locate
trnN-GUU gene − 107302 107373 72 Locate
ycf1 gene + 107714 108844 1131 Locate
ndhF gene − 108738 110969 2232 Locate
rpl32 gene + 111454 111624 171 Locate
trnL-UAG gene + 112381 112460 80 Locate
ccsA gene + 112548 113519 972 Locate
ndhD gene − 113743 115272 1530 Locate
psaC gene − 115363 115608 246 Locate
ndhE gene − 115864 116169 306 Locate
ndhG gene − 116390 116920 531 Locate
ndhI gene − 117289 117795 507 Locate
ndhA gene − 117876 119985 2110 Locate
ndhH gene − 119987 121168 1182 Locate
rps15 gene − 121283 121546 264 Locate
ycf1 gene − 122010 127574 5565 Locate
trnN-GUU gene + 127915 127986 72 Locate
trnR-ACG gene − 128559 128632 74 Locate
rrn5 gene − 128866 128996 131 Locate
rrn4.5 gene + 129090 129354 265 Locate
rrn23 gene − 129453 132263 2811 Locate
trnA-UGC gene − 132427 133305 879 Locate
trnI-GAU gene − 133370 134388 1019 Locate
rrn16 gene − 134686 136176 1491 Locate
trnV-GAC gene − 136403 136474 72 Locate
rps12 gene + 138147 138940 794 Locate
rps7 gene + 138994 139461 468 Locate
ndhB gene + 139732 141939 2208 Locate
trnL-CAA gene + 142502 142582 81 Locate
ycf15 gene − 142843 142992 150 Locate
ycf2 gene − 143182 149985 6804 Locate
trnI-CAU gene + 150080 150153 74 Locate
rpl23 gene + 150319 150600 282 Locate
rpl2 gene + 150619 152097 1479 Locate
Status Available
Accession NC_067783.1
Length 152,208 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources