Lagochilus diacanthophyllus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ180377.1 · 2–75 bp · −
psbA · PQ180377.1 · 333–1,391 bp · −
trnK-UUU · PQ180377.1 · 1,624–4,211 bp · −
matK · PQ180377.1 · 1,925–3,460 bp · −
rps16 · PQ180377.1 · 4,933–6,071 bp · −
trnQ-UUG · PQ180377.1 · 7,085–7,156 bp · −
atpA · PQ180377.1 · 10,114–11,637 bp · −
atpF · PQ180377.1 · 11,726–12,943 bp · −
atpH · PQ180377.1 · 13,305–13,550 bp · −
atpI · PQ180377.1 · 14,507–15,250 bp · −
rps2 · PQ180377.1 · 15,481–16,191 bp · −
rpoC2 · PQ180377.1 · 16,513–20,607 bp · −
rpoC1 · PQ180377.1 · 20,762–23,596 bp · −
rpoB · PQ180377.1 · 23,623–26,835 bp · −
psbM · PQ180377.1 · 29,696–29,800 bp · −
trnD-GUC · PQ180377.1 · 30,337–30,410 bp · −
trnY-GUA · PQ180377.1 · 30,524–30,607 bp · −
trnE-UUC · PQ180377.1 · 30,667–30,739 bp · −
trnT-CGU · PQ180377.1 · 31,326–31,397 bp · −
trnS-UGA · PQ180377.1 · 35,312–35,404 bp · −
trnfM-CAU · PQ180377.1 · 36,369–36,442 bp · −
rps14 · PQ180377.1 · 36,592–36,894 bp · −
psaB · PQ180377.1 · 37,022–39,226 bp · −
psaA · PQ180377.1 · 39,252–41,504 bp · −
ycf3 · PQ180377.1 · 42,082–44,020 bp · −
rps4 · PQ180377.1 · 44,707–45,312 bp · −
trnT-UGU · PQ180377.1 · 45,708–45,780 bp · −
ndhJ · PQ180377.1 · 48,069–48,563 bp · −
ndhK · PQ180377.1 · 48,646–49,323 bp · −
ndhC · PQ180377.1 · 49,377–49,739 bp · −
trnV-UAC · PQ180377.1 · 50,658–51,323 bp · −
atpE · PQ180377.1 · 51,802–52,203 bp · −
atpB · PQ180377.1 · 52,200–53,696 bp · −
psbJ · PQ180377.1 · 63,048–63,170 bp · −
psbL · PQ180377.1 · 63,303–63,419 bp · −
psbF · PQ180377.1 · 63,443–63,562 bp · −
psbE · PQ180377.1 · 63,577–63,828 bp · −
trnW-CCA · PQ180377.1 · 65,288–65,361 bp · −
trnP-UGG · PQ180377.1 · 65,529–65,602 bp · −
rpl20 · PQ180377.1 · 67,353–67,739 bp · −
rps12 · PQ180377.1 · 68,500–68,613 bp · −
rps12 · PQ180377.1 · 95,846–96,639 bp · −
clpP · PQ180377.1 · 68,739–70,611 bp · −
psbN · PQ180377.1 · 72,928–73,059 bp · −
rpoA · PQ180377.1 · 76,482–77,495 bp · −
rps11 · PQ180377.1 · 77,567–77,998 bp · −
rpl36 · PQ180377.1 · 78,086–78,199 bp · −
infA · PQ180377.1 · 78,295–78,528 bp · −
rps8 · PQ180377.1 · 78,650–79,063 bp · −
rpl14 · PQ180377.1 · 79,236–79,604 bp · −
rpl16 · PQ180377.1 · 79,731–81,023 bp · −
rps3 · PQ180377.1 · 81,170–81,832 bp · −
rpl22 · PQ180377.1 · 81,817–82,290 bp · −
rps19 · PQ180377.1 · 82,350–82,628 bp · −
rpl2 · PQ180377.1 · 82,680–84,171 bp · −
rpl23 · PQ180377.1 · 84,190–84,471 bp · −
trnI-CAU · PQ180377.1 · 84,637–84,710 bp · −
trnL-CAA · PQ180377.1 · 92,214–92,294 bp · −
ndhB · PQ180377.1 · 92,839–95,050 bp · −
rps7 · PQ180377.1 · 95,325–95,792 bp · −
trnN-GUU · PQ180377.1 · 106,745–106,816 bp · −
ndhF · PQ180377.1 · 108,206–110,428 bp · −
ndhD · PQ180377.1 · 113,145–114,671 bp · −
psaC · PQ180377.1 · 114,772–115,017 bp · −
ndhE · PQ180377.1 · 115,277–115,582 bp · −
ndhG · PQ180377.1 · 115,798–116,328 bp · −
ndhI · PQ180377.1 · 116,682–117,188 bp · −
ndhA · PQ180377.1 · 117,275–119,429 bp · −
ndhH · PQ180377.1 · 119,431–120,612 bp · −
rps15 · PQ180377.1 · 120,713–120,985 bp · −
ycf1 · PQ180377.1 · 121,411–126,927 bp · −
trnR-ACG · PQ180377.1 · 127,898–127,976 bp · −
rrn5 · PQ180377.1 · 128,206–128,326 bp · −
rrn4.5 · PQ180377.1 · 128,582–128,684 bp · −
rrn23 · PQ180377.1 · 128,783–131,593 bp · −
trnA-UGC · PQ180377.1 · 131,785–132,663 bp · −
trnI-GAU · PQ180377.1 · 132,728–133,743 bp · −
rrn16 · PQ180377.1 · 134,033–135,523 bp · −
trnV-GAC · PQ180377.1 · 135,751–135,822 bp · −
ycf15 · PQ180377.1 · 142,116–142,364 bp · −
ycf2 · PQ180377.1 · 142,404–149,270 bp · −
psbK · PQ180377.1 · 7,485–7,670 bp · +
psbI · PQ180377.1 · 8,046–8,156 bp · +
trnG-UCC · PQ180377.1 · 9,011–9,769 bp · +
trnR-UCU · PQ180377.1 · 9,943–10,017 bp · +
trnC-GCA · PQ180377.1 · 27,923–27,998 bp · +
petN · PQ180377.1 · 28,823–28,912 bp · +
psbD · PQ180377.1 · 32,651–33,712 bp · +
psbC · PQ180377.1 · 33,660–35,081 bp · +
psbZ · PQ180377.1 · 35,731–35,919 bp · +
trnG-GCC · PQ180377.1 · 36,152–36,222 bp · +
trnS-GGA · PQ180377.1 · 44,336–44,422 bp · +
trnL-UAA · PQ180377.1 · 46,457–47,041 bp · +
trnF-GAA · PQ180377.1 · 47,333–47,405 bp · +
trnM-CAU · PQ180377.1 · 51,512–51,584 bp · +
rbcL · PQ180377.1 · 54,490–55,956 bp · +
accD · PQ180377.1 · 56,664–58,130 bp · +
psaI · PQ180377.1 · 58,482–58,592 bp · +
ycf4 · PQ180377.1 · 59,022–59,576 bp · +
cemA · PQ180377.1 · 60,137–60,826 bp · +
petA · PQ180377.1 · 61,043–62,005 bp · +
petL · PQ180377.1 · 64,771–64,866 bp · +
petG · PQ180377.1 · 65,041–65,154 bp · +
psaJ · PQ180377.1 · 65,877–66,011 bp · +
rpl33 · PQ180377.1 · 66,479–66,679 bp · +
rps18 · PQ180377.1 · 66,836–67,141 bp · +
rps12 · PQ180377.1 · 137,430–138,223 bp · +
psbB · PQ180377.1 · 71,042–72,568 bp · +
psbT · PQ180377.1 · 72,760–72,867 bp · +
psbH · PQ180377.1 · 73,163–73,384 bp · +
petB · PQ180377.1 · 73,509–74,891 bp · +
petD · PQ180377.1 · 75,086–76,319 bp · +
ycf2 · PQ180377.1 · 84,799–91,665 bp · +
ycf15 · PQ180377.1 · 91,705–91,953 bp · +
trnV-GAC · PQ180377.1 · 98,247–98,318 bp · +
rrn16 · PQ180377.1 · 98,546–100,036 bp · +
trnI-GAU · PQ180377.1 · 100,326–101,341 bp · +
trnA-UGC · PQ180377.1 · 101,406–102,284 bp · +
rrn23 · PQ180377.1 · 102,476–105,286 bp · +
rrn4.5 · PQ180377.1 · 105,385–105,487 bp · +
rrn5 · PQ180377.1 · 105,743–105,863 bp · +
trnR-ACG · PQ180377.1 · 106,093–106,171 bp · +
rpl32 · PQ180377.1 · 110,934–111,110 bp · +
trnL-UAG · PQ180377.1 · 111,835–111,914 bp · +
ccsA · PQ180377.1 · 112,012–112,983 bp · +
trnN-GUU · PQ180377.1 · 127,253–127,324 bp · +
rps7 · PQ180377.1 · 138,277–138,744 bp · +
ndhB · PQ180377.1 · 139,019–141,230 bp · +
trnL-CAA · PQ180377.1 · 141,775–141,855 bp · +
trnI-CAU · PQ180377.1 · 149,359–149,432 bp · +
rpl23 · PQ180377.1 · 149,598–149,879 bp · +
rpl2 · PQ180377.1 · 149,898–151,389 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagochilus diacanthophyllus
ANNOTATED PLASTOME
PQ180377.1
151,482 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37870 75741 113612 151482 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 333 1391 1059 Locate
trnK-UUU gene − 1624 4211 2588 Locate
matK gene − 1925 3460 1536 Locate
rps16 gene − 4933 6071 1139 Locate
trnQ-UUG gene − 7085 7156 72 Locate
psbK gene + 7485 7670 186 Locate
psbI gene + 8046 8156 111 Locate
trnG-UCC gene + 9011 9769 759 Locate
trnR-UCU gene + 9943 10017 75 Locate
atpA gene − 10114 11637 1524 Locate
atpF gene − 11726 12943 1218 Locate
atpH gene − 13305 13550 246 Locate
atpI gene − 14507 15250 744 Locate
rps2 gene − 15481 16191 711 Locate
rpoC2 gene − 16513 20607 4095 Locate
rpoC1 gene − 20762 23596 2835 Locate
rpoB gene − 23623 26835 3213 Locate
trnC-GCA gene + 27923 27998 76 Locate
petN gene + 28823 28912 90 Locate
psbM gene − 29696 29800 105 Locate
trnD-GUC gene − 30337 30410 74 Locate
trnY-GUA gene − 30524 30607 84 Locate
trnE-UUC gene − 30667 30739 73 Locate
trnT-CGU gene − 31326 31397 72 Locate
psbD gene + 32651 33712 1062 Locate
psbC gene + 33660 35081 1422 Locate
trnS-UGA gene − 35312 35404 93 Locate
psbZ gene + 35731 35919 189 Locate
trnG-GCC gene + 36152 36222 71 Locate
trnfM-CAU gene − 36369 36442 74 Locate
rps14 gene − 36592 36894 303 Locate
psaB gene − 37022 39226 2205 Locate
psaA gene − 39252 41504 2253 Locate
ycf3 gene − 42082 44020 1939 Locate
trnS-GGA gene + 44336 44422 87 Locate
rps4 gene − 44707 45312 606 Locate
trnT-UGU gene − 45708 45780 73 Locate
trnL-UAA gene + 46457 47041 585 Locate
trnF-GAA gene + 47333 47405 73 Locate
ndhJ gene − 48069 48563 495 Locate
ndhK gene − 48646 49323 678 Locate
ndhC gene − 49377 49739 363 Locate
trnV-UAC gene − 50658 51323 666 Locate
trnM-CAU gene + 51512 51584 73 Locate
atpE gene − 51802 52203 402 Locate
atpB gene − 52200 53696 1497 Locate
rbcL gene + 54490 55956 1467 Locate
accD gene + 56664 58130 1467 Locate
psaI gene + 58482 58592 111 Locate
ycf4 gene + 59022 59576 555 Locate
cemA gene + 60137 60826 690 Locate
petA gene + 61043 62005 963 Locate
psbJ gene − 63048 63170 123 Locate
psbL gene − 63303 63419 117 Locate
psbF gene − 63443 63562 120 Locate
psbE gene − 63577 63828 252 Locate
petL gene + 64771 64866 96 Locate
petG gene + 65041 65154 114 Locate
trnW-CCA gene − 65288 65361 74 Locate
trnP-UGG gene − 65529 65602 74 Locate
psaJ gene + 65877 66011 135 Locate
rpl33 gene + 66479 66679 201 Locate
rps18 gene + 66836 67141 306 Locate
rpl20 gene − 67353 67739 387 Locate
rps12 gene − 68500 68613 114 Locate
clpP gene − 68739 70611 1873 Locate
psbB gene + 71042 72568 1527 Locate
psbT gene + 72760 72867 108 Locate
psbN gene − 72928 73059 132 Locate
psbH gene + 73163 73384 222 Locate
petB gene + 73509 74891 1383 Locate
petD gene + 75086 76319 1234 Locate
rpoA gene − 76482 77495 1014 Locate
rps11 gene − 77567 77998 432 Locate
rpl36 gene − 78086 78199 114 Locate
infA gene − 78295 78528 234 Locate
rps8 gene − 78650 79063 414 Locate
rpl14 gene − 79236 79604 369 Locate
rpl16 gene − 79731 81023 1293 Locate
rps3 gene − 81170 81832 663 Locate
rpl22 gene − 81817 82290 474 Locate
rps19 gene − 82350 82628 279 Locate
rpl2 gene − 82680 84171 1492 Locate
rpl23 gene − 84190 84471 282 Locate
trnI-CAU gene − 84637 84710 74 Locate
ycf2 gene + 84799 91665 6867 Locate
ycf15 gene + 91705 91953 249 Locate
trnL-CAA gene − 92214 92294 81 Locate
ndhB gene − 92839 95050 2212 Locate
rps7 gene − 95325 95792 468 Locate
rps12 gene − 95846 96639 794 Locate
trnV-GAC gene + 98247 98318 72 Locate
rrn16 gene + 98546 100036 1491 Locate
trnI-GAU gene + 100326 101341 1016 Locate
trnA-UGC gene + 101406 102284 879 Locate
rrn23 gene + 102476 105286 2811 Locate
rrn4.5 gene + 105385 105487 103 Locate
rrn5 gene + 105743 105863 121 Locate
trnR-ACG gene + 106093 106171 79 Locate
trnN-GUU gene − 106745 106816 72 Locate
ndhF gene − 108206 110428 2223 Locate
rpl32 gene + 110934 111110 177 Locate
trnL-UAG gene + 111835 111914 80 Locate
ccsA gene + 112012 112983 972 Locate
ndhD gene − 113145 114671 1527 Locate
psaC gene − 114772 115017 246 Locate
ndhE gene − 115277 115582 306 Locate
ndhG gene − 115798 116328 531 Locate
ndhI gene − 116682 117188 507 Locate
ndhA gene − 117275 119429 2155 Locate
ndhH gene − 119431 120612 1182 Locate
rps15 gene − 120713 120985 273 Locate
ycf1 gene − 121411 126927 5517 Locate
trnN-GUU gene + 127253 127324 72 Locate
trnR-ACG gene − 127898 127976 79 Locate
rrn5 gene − 128206 128326 121 Locate
rrn4.5 gene − 128582 128684 103 Locate
rrn23 gene − 128783 131593 2811 Locate
trnA-UGC gene − 131785 132663 879 Locate
trnI-GAU gene − 132728 133743 1016 Locate
rrn16 gene − 134033 135523 1491 Locate
trnV-GAC gene − 135751 135822 72 Locate
rps12 gene + 137430 138223 794 Locate
rps7 gene + 138277 138744 468 Locate
ndhB gene + 139019 141230 2212 Locate
trnL-CAA gene + 141775 141855 81 Locate
ycf15 gene − 142116 142364 249 Locate
ycf2 gene − 142404 149270 6867 Locate
trnI-CAU gene + 149359 149432 74 Locate
rpl23 gene + 149598 149879 282 Locate
rpl2 gene + 149898 151389 1492 Locate
Status Available
Accession PQ180377.1
Length 151,482 bp
GC content 38.5%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources