Lagochilus platyacanthus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231080.1 · 2–75 bp · −
psbA · PQ231080.1 · 315–1,373 bp · −
trnK-UUU · PQ231080.1 · 1,606–4,192 bp · −
matK · PQ231080.1 · 1,907–3,442 bp · −
rps16 · PQ231080.1 · 4,918–6,056 bp · −
trnQ-UUG · PQ231080.1 · 7,071–7,142 bp · −
trnS-GGA · PQ231080.1 · 8,280–8,367 bp · −
atpA · PQ231080.1 · 10,110–11,633 bp · −
atpF · PQ231080.1 · 11,722–12,933 bp · −
atpH · PQ231080.1 · 13,307–13,552 bp · −
atpI · PQ231080.1 · 14,512–15,255 bp · −
rps2 · PQ231080.1 · 15,486–16,196 bp · −
rpoC2 · PQ231080.1 · 16,518–20,600 bp · −
rpoC1 · PQ231080.1 · 20,755–23,580 bp · −
rpoB · PQ231080.1 · 23,607–26,819 bp · −
psbM · PQ231080.1 · 29,675–29,779 bp · −
trnD-GUC · PQ231080.1 · 30,307–30,380 bp · −
trnY-GUA · PQ231080.1 · 30,494–30,577 bp · −
trnE-UUC · PQ231080.1 · 30,637–30,709 bp · −
trnT-CGU · PQ231080.1 · 31,332–31,403 bp · −
trnS-UGA · PQ231080.1 · 35,318–35,410 bp · −
trnfM-CAU · PQ231080.1 · 36,373–36,446 bp · −
rps14 · PQ231080.1 · 36,646–36,948 bp · −
psaB · PQ231080.1 · 37,077–39,281 bp · −
psaA · PQ231080.1 · 39,307–41,559 bp · −
ycf3 · PQ231080.1 · 42,139–44,079 bp · −
rps4 · PQ231080.1 · 44,773–45,378 bp · −
trnT-UGU · PQ231080.1 · 45,774–45,846 bp · −
ndhJ · PQ231080.1 · 48,128–48,622 bp · −
ndhK · PQ231080.1 · 48,705–49,382 bp · −
ndhC · PQ231080.1 · 49,436–49,798 bp · −
trnV-UAC · PQ231080.1 · 50,754–51,406 bp · −
atpE · PQ231080.1 · 51,894–52,295 bp · −
atpB · PQ231080.1 · 52,292–53,788 bp · −
psbJ · PQ231080.1 · 63,130–63,252 bp · −
psbL · PQ231080.1 · 63,390–63,506 bp · −
psbF · PQ231080.1 · 63,530–63,649 bp · −
psbE · PQ231080.1 · 63,664–63,915 bp · −
trnW-CCA · PQ231080.1 · 65,376–65,449 bp · −
trnP-UGG · PQ231080.1 · 65,617–65,690 bp · −
rpl20 · PQ231080.1 · 67,445–67,831 bp · −
rps12 · PQ231080.1 · 68,590–68,703 bp · −
rps12 · PQ231080.1 · 95,932–96,725 bp · −
clpP · PQ231080.1 · 68,829–70,693 bp · −
psbN · PQ231080.1 · 72,998–73,129 bp · −
rpoA · PQ231080.1 · 76,551–77,564 bp · −
rps11 · PQ231080.1 · 77,636–78,067 bp · −
rpl36 · PQ231080.1 · 78,155–78,268 bp · −
infA · PQ231080.1 · 78,364–78,597 bp · −
rps8 · PQ231080.1 · 78,720–79,133 bp · −
rpl14 · PQ231080.1 · 79,305–79,673 bp · −
rpl16 · PQ231080.1 · 79,800–81,091 bp · −
rps3 · PQ231080.1 · 81,238–81,900 bp · −
rpl22 · PQ231080.1 · 81,885–82,358 bp · −
rps19 · PQ231080.1 · 82,418–82,696 bp · −
rpl2 · PQ231080.1 · 82,748–84,239 bp · −
rpl23 · PQ231080.1 · 84,258–84,539 bp · −
trnI-CAU · PQ231080.1 · 84,705–84,778 bp · −
trnL-CAA · PQ231080.1 · 92,300–92,380 bp · −
ndhB · PQ231080.1 · 92,925–95,136 bp · −
rps7 · PQ231080.1 · 95,411–95,878 bp · −
trnN-GUU · PQ231080.1 · 106,818–106,889 bp · −
ndhF · PQ231080.1 · 108,279–110,501 bp · −
ndhD · PQ231080.1 · 113,225–114,751 bp · −
psaC · PQ231080.1 · 114,851–115,096 bp · −
ndhE · PQ231080.1 · 115,352–115,657 bp · −
ndhG · PQ231080.1 · 115,873–116,403 bp · −
ndhI · PQ231080.1 · 116,768–117,274 bp · −
ndhA · PQ231080.1 · 117,361–119,515 bp · −
ndhH · PQ231080.1 · 119,517–120,698 bp · −
rps15 · PQ231080.1 · 120,799–121,071 bp · −
ycf1 · PQ231080.1 · 121,503–127,034 bp · −
trnR-ACG · PQ231080.1 · 128,011–128,089 bp · −
rrn5 · PQ231080.1 · 128,319–128,439 bp · −
rrn4.5 · PQ231080.1 · 128,664–128,766 bp · −
rrn23 · PQ231080.1 · 128,865–131,675 bp · −
trnA-UGC · PQ231080.1 · 131,867–132,745 bp · −
trnI-GAU · PQ231080.1 · 132,810–133,825 bp · −
rrn16 · PQ231080.1 · 134,115–135,605 bp · −
trnV-GAC · PQ231080.1 · 135,833–135,904 bp · −
ycf15 · PQ231080.1 · 142,210–142,458 bp · −
ycf2 · PQ231080.1 · 142,498–149,382 bp · −
psbK · PQ231080.1 · 7,479–7,664 bp · +
psbI · PQ231080.1 · 8,045–8,155 bp · +
trnG-UCC · PQ231080.1 · 9,004–9,764 bp · +
trnR-UCU · PQ231080.1 · 9,939–10,013 bp · +
trnC-GCA · PQ231080.1 · 27,901–27,976 bp · +
petN · PQ231080.1 · 28,801–28,890 bp · +
psbD · PQ231080.1 · 32,657–33,718 bp · +
psbC · PQ231080.1 · 33,666–35,087 bp · +
psbZ · PQ231080.1 · 35,737–35,925 bp · +
trnG-GCC · PQ231080.1 · 36,156–36,226 bp · +
trnS-GGA · PQ231080.1 · 44,395–44,481 bp · +
trnL-UAA · PQ231080.1 · 46,522–47,101 bp · +
trnF-GAA · PQ231080.1 · 47,393–47,465 bp · +
trnM-CAU · PQ231080.1 · 51,595–51,667 bp · +
rbcL · PQ231080.1 · 54,576–56,042 bp · +
accD · PQ231080.1 · 56,748–58,214 bp · +
psaI · PQ231080.1 · 58,566–58,676 bp · +
ycf4 · PQ231080.1 · 59,106–59,660 bp · +
cemA · PQ231080.1 · 60,221–60,910 bp · +
petA · PQ231080.1 · 61,127–62,089 bp · +
petL · PQ231080.1 · 64,859–64,954 bp · +
petG · PQ231080.1 · 65,129–65,242 bp · +
psaJ · PQ231080.1 · 65,965–66,099 bp · +
rpl33 · PQ231080.1 · 66,570–66,770 bp · +
rps18 · PQ231080.1 · 66,928–67,233 bp · +
rps12 · PQ231080.1 · 137,524–138,317 bp · +
psbB · PQ231080.1 · 71,124–72,650 bp · +
psbT · PQ231080.1 · 72,830–72,937 bp · +
psbH · PQ231080.1 · 73,233–73,454 bp · +
petB · PQ231080.1 · 73,575–74,959 bp · +
petD · PQ231080.1 · 75,154–76,382 bp · +
ycf2 · PQ231080.1 · 84,867–91,751 bp · +
ycf15 · PQ231080.1 · 91,791–92,039 bp · +
trnV-GAC · PQ231080.1 · 98,345–98,416 bp · +
rrn16 · PQ231080.1 · 98,644–100,134 bp · +
trnI-GAU · PQ231080.1 · 100,424–101,439 bp · +
trnA-UGC · PQ231080.1 · 101,504–102,382 bp · +
rrn23 · PQ231080.1 · 102,574–105,384 bp · +
rrn4.5 · PQ231080.1 · 105,483–105,585 bp · +
rrn5 · PQ231080.1 · 105,810–105,930 bp · +
trnR-ACG · PQ231080.1 · 106,160–106,238 bp · +
rpl32 · PQ231080.1 · 111,006–111,182 bp · +
trnL-UAG · PQ231080.1 · 111,906–111,985 bp · +
ccsA · PQ231080.1 · 112,076–113,053 bp · +
trnN-GUU · PQ231080.1 · 127,360–127,431 bp · +
rps7 · PQ231080.1 · 138,371–138,838 bp · +
ndhB · PQ231080.1 · 139,113–141,324 bp · +
trnL-CAA · PQ231080.1 · 141,869–141,949 bp · +
trnI-CAU · PQ231080.1 · 149,471–149,544 bp · +
rpl23 · PQ231080.1 · 149,710–149,991 bp · +
rpl2 · PQ231080.1 · 150,010–151,501 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagochilus platyacanthus
ANNOTATED PLASTOME
PQ231080.1
151,594 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37898 75797 113696 151594 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 315 1373 1059 Locate
trnK-UUU gene − 1606 4192 2587 Locate
matK gene − 1907 3442 1536 Locate
rps16 gene − 4918 6056 1139 Locate
trnQ-UUG gene − 7071 7142 72 Locate
psbK gene + 7479 7664 186 Locate
psbI gene + 8045 8155 111 Locate
trnS-GGA gene − 8280 8367 88 Locate
trnG-UCC gene + 9004 9764 761 Locate
trnR-UCU gene + 9939 10013 75 Locate
atpA gene − 10110 11633 1524 Locate
atpF gene − 11722 12933 1212 Locate
atpH gene − 13307 13552 246 Locate
atpI gene − 14512 15255 744 Locate
rps2 gene − 15486 16196 711 Locate
rpoC2 gene − 16518 20600 4083 Locate
rpoC1 gene − 20755 23580 2826 Locate
rpoB gene − 23607 26819 3213 Locate
trnC-GCA gene + 27901 27976 76 Locate
petN gene + 28801 28890 90 Locate
psbM gene − 29675 29779 105 Locate
trnD-GUC gene − 30307 30380 74 Locate
trnY-GUA gene − 30494 30577 84 Locate
trnE-UUC gene − 30637 30709 73 Locate
trnT-CGU gene − 31332 31403 72 Locate
psbD gene + 32657 33718 1062 Locate
psbC gene + 33666 35087 1422 Locate
trnS-UGA gene − 35318 35410 93 Locate
psbZ gene + 35737 35925 189 Locate
trnG-GCC gene + 36156 36226 71 Locate
trnfM-CAU gene − 36373 36446 74 Locate
rps14 gene − 36646 36948 303 Locate
psaB gene − 37077 39281 2205 Locate
psaA gene − 39307 41559 2253 Locate
ycf3 gene − 42139 44079 1941 Locate
trnS-GGA gene + 44395 44481 87 Locate
rps4 gene − 44773 45378 606 Locate
trnT-UGU gene − 45774 45846 73 Locate
trnL-UAA gene + 46522 47101 580 Locate
trnF-GAA gene + 47393 47465 73 Locate
ndhJ gene − 48128 48622 495 Locate
ndhK gene − 48705 49382 678 Locate
ndhC gene − 49436 49798 363 Locate
trnV-UAC gene − 50754 51406 653 Locate
trnM-CAU gene + 51595 51667 73 Locate
atpE gene − 51894 52295 402 Locate
atpB gene − 52292 53788 1497 Locate
rbcL gene + 54576 56042 1467 Locate
accD gene + 56748 58214 1467 Locate
psaI gene + 58566 58676 111 Locate
ycf4 gene + 59106 59660 555 Locate
cemA gene + 60221 60910 690 Locate
petA gene + 61127 62089 963 Locate
psbJ gene − 63130 63252 123 Locate
psbL gene − 63390 63506 117 Locate
psbF gene − 63530 63649 120 Locate
psbE gene − 63664 63915 252 Locate
petL gene + 64859 64954 96 Locate
petG gene + 65129 65242 114 Locate
trnW-CCA gene − 65376 65449 74 Locate
trnP-UGG gene − 65617 65690 74 Locate
psaJ gene + 65965 66099 135 Locate
rpl33 gene + 66570 66770 201 Locate
rps18 gene + 66928 67233 306 Locate
rpl20 gene − 67445 67831 387 Locate
rps12 gene − 68590 68703 114 Locate
clpP gene − 68829 70693 1865 Locate
psbB gene + 71124 72650 1527 Locate
psbT gene + 72830 72937 108 Locate
psbN gene − 72998 73129 132 Locate
psbH gene + 73233 73454 222 Locate
petB gene + 73575 74959 1385 Locate
petD gene + 75154 76382 1229 Locate
rpoA gene − 76551 77564 1014 Locate
rps11 gene − 77636 78067 432 Locate
rpl36 gene − 78155 78268 114 Locate
infA gene − 78364 78597 234 Locate
rps8 gene − 78720 79133 414 Locate
rpl14 gene − 79305 79673 369 Locate
rpl16 gene − 79800 81091 1292 Locate
rps3 gene − 81238 81900 663 Locate
rpl22 gene − 81885 82358 474 Locate
rps19 gene − 82418 82696 279 Locate
rpl2 gene − 82748 84239 1492 Locate
rpl23 gene − 84258 84539 282 Locate
trnI-CAU gene − 84705 84778 74 Locate
ycf2 gene + 84867 91751 6885 Locate
ycf15 gene + 91791 92039 249 Locate
trnL-CAA gene − 92300 92380 81 Locate
ndhB gene − 92925 95136 2212 Locate
rps7 gene − 95411 95878 468 Locate
rps12 gene − 95932 96725 794 Locate
trnV-GAC gene + 98345 98416 72 Locate
rrn16 gene + 98644 100134 1491 Locate
trnI-GAU gene + 100424 101439 1016 Locate
trnA-UGC gene + 101504 102382 879 Locate
rrn23 gene + 102574 105384 2811 Locate
rrn4.5 gene + 105483 105585 103 Locate
rrn5 gene + 105810 105930 121 Locate
trnR-ACG gene + 106160 106238 79 Locate
trnN-GUU gene − 106818 106889 72 Locate
ndhF gene − 108279 110501 2223 Locate
rpl32 gene + 111006 111182 177 Locate
trnL-UAG gene + 111906 111985 80 Locate
ccsA gene + 112076 113053 978 Locate
ndhD gene − 113225 114751 1527 Locate
psaC gene − 114851 115096 246 Locate
ndhE gene − 115352 115657 306 Locate
ndhG gene − 115873 116403 531 Locate
ndhI gene − 116768 117274 507 Locate
ndhA gene − 117361 119515 2155 Locate
ndhH gene − 119517 120698 1182 Locate
rps15 gene − 120799 121071 273 Locate
ycf1 gene − 121503 127034 5532 Locate
trnN-GUU gene + 127360 127431 72 Locate
trnR-ACG gene − 128011 128089 79 Locate
rrn5 gene − 128319 128439 121 Locate
rrn4.5 gene − 128664 128766 103 Locate
rrn23 gene − 128865 131675 2811 Locate
trnA-UGC gene − 131867 132745 879 Locate
trnI-GAU gene − 132810 133825 1016 Locate
rrn16 gene − 134115 135605 1491 Locate
trnV-GAC gene − 135833 135904 72 Locate
rps12 gene + 137524 138317 794 Locate
rps7 gene + 138371 138838 468 Locate
ndhB gene + 139113 141324 2212 Locate
trnL-CAA gene + 141869 141949 81 Locate
ycf15 gene − 142210 142458 249 Locate
ycf2 gene − 142498 149382 6885 Locate
trnI-CAU gene + 149471 149544 74 Locate
rpl23 gene + 149710 149991 282 Locate
rpl2 gene + 150010 151501 1492 Locate
Status Available
Accession PQ231080.1
Length 151,594 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources