Lagochilus sp chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ279583.1 · 2–75 bp · −
psbA · PQ279583.1 · 316–1,374 bp · −
trnK-UUU · PQ279583.1 · 1,607–4,194 bp · −
matK · PQ279583.1 · 1,908–3,443 bp · −
rps16 · PQ279583.1 · 4,916–6,070 bp · −
trnQ-UUG · PQ279583.1 · 7,084–7,155 bp · −
trnS-GGA · PQ279583.1 · 8,287–8,374 bp · −
atpA · PQ279583.1 · 10,123–11,646 bp · −
atpF · PQ279583.1 · 11,735–12,948 bp · −
atpH · PQ279583.1 · 13,308–13,553 bp · −
atpI · PQ279583.1 · 14,516–15,259 bp · −
rps2 · PQ279583.1 · 15,490–16,200 bp · −
rpoC2 · PQ279583.1 · 16,533–20,606 bp · −
rpoC1 · PQ279583.1 · 20,761–23,587 bp · −
rpoB · PQ279583.1 · 23,614–26,826 bp · −
psbM · PQ279583.1 · 29,708–29,812 bp · −
trnD-GUC · PQ279583.1 · 30,349–30,422 bp · −
trnY-GUA · PQ279583.1 · 30,536–30,619 bp · −
trnE-UUC · PQ279583.1 · 30,679–30,751 bp · −
trnT-CGU · PQ279583.1 · 31,348–31,419 bp · −
trnS-UGA · PQ279583.1 · 35,336–35,428 bp · −
trnfM-CAU · PQ279583.1 · 36,392–36,465 bp · −
rps14 · PQ279583.1 · 36,615–36,917 bp · −
psaB · PQ279583.1 · 37,046–39,250 bp · −
psaA · PQ279583.1 · 39,276–41,528 bp · −
ycf3 · PQ279583.1 · 42,108–44,049 bp · −
rps4 · PQ279583.1 · 44,762–45,367 bp · −
trnT-UGU · PQ279583.1 · 45,765–45,837 bp · −
ndhJ · PQ279583.1 · 48,118–48,612 bp · −
ndhK · PQ279583.1 · 48,695–49,372 bp · −
ndhC · PQ279583.1 · 49,426–49,788 bp · −
trnV-UAC · PQ279583.1 · 50,745–51,404 bp · −
atpE · PQ279583.1 · 51,883–52,284 bp · −
atpB · PQ279583.1 · 52,281–53,777 bp · −
psbJ · PQ279583.1 · 62,982–63,104 bp · −
psbL · PQ279583.1 · 63,242–63,358 bp · −
psbF · PQ279583.1 · 63,382–63,501 bp · −
psbE · PQ279583.1 · 63,516–63,767 bp · −
trnW-CCA · PQ279583.1 · 65,227–65,300 bp · −
trnP-UGG · PQ279583.1 · 65,468–65,541 bp · −
rpl20 · PQ279583.1 · 67,298–67,684 bp · −
rps12 · PQ279583.1 · 68,444–68,557 bp · −
rps12 · PQ279583.1 · 95,785–96,578 bp · −
clpP · PQ279583.1 · 68,683–70,545 bp · −
psbN · PQ279583.1 · 72,850–72,981 bp · −
rpoA · PQ279583.1 · 76,412–77,425 bp · −
rps11 · PQ279583.1 · 77,497–77,928 bp · −
rpl36 · PQ279583.1 · 78,016–78,129 bp · −
infA · PQ279583.1 · 78,225–78,458 bp · −
rps8 · PQ279583.1 · 78,580–78,993 bp · −
rpl14 · PQ279583.1 · 79,166–79,534 bp · −
rpl16 · PQ279583.1 · 79,661–80,953 bp · −
rps3 · PQ279583.1 · 81,100–81,762 bp · −
rpl22 · PQ279583.1 · 81,747–82,229 bp · −
rps19 · PQ279583.1 · 82,289–82,567 bp · −
rpl2 · PQ279583.1 · 82,619–84,110 bp · −
rpl23 · PQ279583.1 · 84,129–84,410 bp · −
trnI-CAU · PQ279583.1 · 84,576–84,649 bp · −
trnL-CAA · PQ279583.1 · 92,153–92,233 bp · −
ndhB · PQ279583.1 · 92,778–94,989 bp · −
rps7 · PQ279583.1 · 95,264–95,731 bp · −
trnN-GUU · PQ279583.1 · 106,695–106,766 bp · −
ndhF · PQ279583.1 · 108,156–110,378 bp · −
ndhD · PQ279583.1 · 113,097–114,623 bp · −
psaC · PQ279583.1 · 114,724–114,969 bp · −
ndhE · PQ279583.1 · 115,229–115,534 bp · −
ndhG · PQ279583.1 · 115,750–116,280 bp · −
ndhI · PQ279583.1 · 116,645–117,151 bp · −
ndhA · PQ279583.1 · 117,238–119,392 bp · −
ndhH · PQ279583.1 · 119,394–120,575 bp · −
rps15 · PQ279583.1 · 120,676–120,948 bp · −
ycf1 · PQ279583.1 · 121,384–126,900 bp · −
trnR-ACG · PQ279583.1 · 127,870–127,948 bp · −
rrn5 · PQ279583.1 · 128,178–128,298 bp · −
rrn4.5 · PQ279583.1 · 128,554–128,656 bp · −
rrn23 · PQ279583.1 · 128,755–131,565 bp · −
trnA-UGC · PQ279583.1 · 131,757–132,635 bp · −
trnI-GAU · PQ279583.1 · 132,700–133,715 bp · −
rrn16 · PQ279583.1 · 134,005–135,495 bp · −
trnV-GAC · PQ279583.1 · 135,723–135,794 bp · −
ycf15 · PQ279583.1 · 142,100–142,348 bp · −
ycf2 · PQ279583.1 · 142,388–149,254 bp · −
psbK · PQ279583.1 · 7,492–7,677 bp · +
psbI · PQ279583.1 · 8,054–8,164 bp · +
trnG-UCC · PQ279583.1 · 9,019–9,778 bp · +
trnR-UCU · PQ279583.1 · 9,952–10,026 bp · +
trnC-GCA · PQ279583.1 · 27,935–28,010 bp · +
petN · PQ279583.1 · 28,835–28,924 bp · +
psbD · PQ279583.1 · 32,675–33,736 bp · +
psbC · PQ279583.1 · 33,684–35,105 bp · +
psbZ · PQ279583.1 · 35,755–35,943 bp · +
trnG-GCC · PQ279583.1 · 36,175–36,245 bp · +
trnS-GGA · PQ279583.1 · 44,391–44,477 bp · +
trnL-UAA · PQ279583.1 · 46,513–47,092 bp · +
trnF-GAA · PQ279583.1 · 47,384–47,456 bp · +
trnM-CAU · PQ279583.1 · 51,593–51,665 bp · +
rbcL · PQ279583.1 · 54,568–56,034 bp · +
accD · PQ279583.1 · 56,746–58,212 bp · +
psaI · PQ279583.1 · 58,418–58,528 bp · +
ycf4 · PQ279583.1 · 58,958–59,512 bp · +
cemA · PQ279583.1 · 60,073–60,762 bp · +
petA · PQ279583.1 · 60,988–61,950 bp · +
petL · PQ279583.1 · 64,710–64,805 bp · +
petG · PQ279583.1 · 64,980–65,093 bp · +
psaJ · PQ279583.1 · 65,816–65,950 bp · +
rpl33 · PQ279583.1 · 66,423–66,623 bp · +
rps18 · PQ279583.1 · 66,781–67,086 bp · +
rps12 · PQ279583.1 · 137,414–138,207 bp · +
psbB · PQ279583.1 · 70,976–72,502 bp · +
psbT · PQ279583.1 · 72,682–72,789 bp · +
psbH · PQ279583.1 · 73,085–73,306 bp · +
petB · PQ279583.1 · 73,427–74,815 bp · +
petD · PQ279583.1 · 75,010–76,243 bp · +
ycf2 · PQ279583.1 · 84,738–91,604 bp · +
ycf15 · PQ279583.1 · 91,644–91,892 bp · +
trnV-GAC · PQ279583.1 · 98,198–98,269 bp · +
rrn16 · PQ279583.1 · 98,497–99,987 bp · +
trnI-GAU · PQ279583.1 · 100,277–101,292 bp · +
trnA-UGC · PQ279583.1 · 101,357–102,235 bp · +
rrn23 · PQ279583.1 · 102,427–105,237 bp · +
rrn4.5 · PQ279583.1 · 105,336–105,438 bp · +
rrn5 · PQ279583.1 · 105,694–105,814 bp · +
trnR-ACG · PQ279583.1 · 106,044–106,122 bp · +
rpl32 · PQ279583.1 · 110,882–111,058 bp · +
trnL-UAG · PQ279583.1 · 111,779–111,858 bp · +
ccsA · PQ279583.1 · 111,955–112,926 bp · +
trnN-GUU · PQ279583.1 · 127,226–127,297 bp · +
rps7 · PQ279583.1 · 138,261–138,728 bp · +
ndhB · PQ279583.1 · 139,003–141,214 bp · +
trnL-CAA · PQ279583.1 · 141,759–141,839 bp · +
trnI-CAU · PQ279583.1 · 149,343–149,416 bp · +
rpl23 · PQ279583.1 · 149,582–149,863 bp · +
rpl2 · PQ279583.1 · 149,882–151,373 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagochilus sp
ANNOTATED PLASTOME
PQ279583.1
151,466 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37866 75733 113600 151466 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 316 1374 1059 Locate
trnK-UUU gene − 1607 4194 2588 Locate
matK gene − 1908 3443 1536 Locate
rps16 gene − 4916 6070 1155 Locate
trnQ-UUG gene − 7084 7155 72 Locate
psbK gene + 7492 7677 186 Locate
psbI gene + 8054 8164 111 Locate
trnS-GGA gene − 8287 8374 88 Locate
trnG-UCC gene + 9019 9778 760 Locate
trnR-UCU gene + 9952 10026 75 Locate
atpA gene − 10123 11646 1524 Locate
atpF gene − 11735 12948 1214 Locate
atpH gene − 13308 13553 246 Locate
atpI gene − 14516 15259 744 Locate
rps2 gene − 15490 16200 711 Locate
rpoC2 gene − 16533 20606 4074 Locate
rpoC1 gene − 20761 23587 2827 Locate
rpoB gene − 23614 26826 3213 Locate
trnC-GCA gene + 27935 28010 76 Locate
petN gene + 28835 28924 90 Locate
psbM gene − 29708 29812 105 Locate
trnD-GUC gene − 30349 30422 74 Locate
trnY-GUA gene − 30536 30619 84 Locate
trnE-UUC gene − 30679 30751 73 Locate
trnT-CGU gene − 31348 31419 72 Locate
psbD gene + 32675 33736 1062 Locate
psbC gene + 33684 35105 1422 Locate
trnS-UGA gene − 35336 35428 93 Locate
psbZ gene + 35755 35943 189 Locate
trnG-GCC gene + 36175 36245 71 Locate
trnfM-CAU gene − 36392 36465 74 Locate
rps14 gene − 36615 36917 303 Locate
psaB gene − 37046 39250 2205 Locate
psaA gene − 39276 41528 2253 Locate
ycf3 gene − 42108 44049 1942 Locate
trnS-GGA gene + 44391 44477 87 Locate
rps4 gene − 44762 45367 606 Locate
trnT-UGU gene − 45765 45837 73 Locate
trnL-UAA gene + 46513 47092 580 Locate
trnF-GAA gene + 47384 47456 73 Locate
ndhJ gene − 48118 48612 495 Locate
ndhK gene − 48695 49372 678 Locate
ndhC gene − 49426 49788 363 Locate
trnV-UAC gene − 50745 51404 660 Locate
trnM-CAU gene + 51593 51665 73 Locate
atpE gene − 51883 52284 402 Locate
atpB gene − 52281 53777 1497 Locate
rbcL gene + 54568 56034 1467 Locate
accD gene + 56746 58212 1467 Locate
psaI gene + 58418 58528 111 Locate
ycf4 gene + 58958 59512 555 Locate
cemA gene + 60073 60762 690 Locate
petA gene + 60988 61950 963 Locate
psbJ gene − 62982 63104 123 Locate
psbL gene − 63242 63358 117 Locate
psbF gene − 63382 63501 120 Locate
psbE gene − 63516 63767 252 Locate
petL gene + 64710 64805 96 Locate
petG gene + 64980 65093 114 Locate
trnW-CCA gene − 65227 65300 74 Locate
trnP-UGG gene − 65468 65541 74 Locate
psaJ gene + 65816 65950 135 Locate
rpl33 gene + 66423 66623 201 Locate
rps18 gene + 66781 67086 306 Locate
rpl20 gene − 67298 67684 387 Locate
rps12 gene − 68444 68557 114 Locate
clpP gene − 68683 70545 1863 Locate
psbB gene + 70976 72502 1527 Locate
psbT gene + 72682 72789 108 Locate
psbN gene − 72850 72981 132 Locate
psbH gene + 73085 73306 222 Locate
petB gene + 73427 74815 1389 Locate
petD gene + 75010 76243 1234 Locate
rpoA gene − 76412 77425 1014 Locate
rps11 gene − 77497 77928 432 Locate
rpl36 gene − 78016 78129 114 Locate
infA gene − 78225 78458 234 Locate
rps8 gene − 78580 78993 414 Locate
rpl14 gene − 79166 79534 369 Locate
rpl16 gene − 79661 80953 1293 Locate
rps3 gene − 81100 81762 663 Locate
rpl22 gene − 81747 82229 483 Locate
rps19 gene − 82289 82567 279 Locate
rpl2 gene − 82619 84110 1492 Locate
rpl23 gene − 84129 84410 282 Locate
trnI-CAU gene − 84576 84649 74 Locate
ycf2 gene + 84738 91604 6867 Locate
ycf15 gene + 91644 91892 249 Locate
trnL-CAA gene − 92153 92233 81 Locate
ndhB gene − 92778 94989 2212 Locate
rps7 gene − 95264 95731 468 Locate
rps12 gene − 95785 96578 794 Locate
trnV-GAC gene + 98198 98269 72 Locate
rrn16 gene + 98497 99987 1491 Locate
trnI-GAU gene + 100277 101292 1016 Locate
trnA-UGC gene + 101357 102235 879 Locate
rrn23 gene + 102427 105237 2811 Locate
rrn4.5 gene + 105336 105438 103 Locate
rrn5 gene + 105694 105814 121 Locate
trnR-ACG gene + 106044 106122 79 Locate
trnN-GUU gene − 106695 106766 72 Locate
ndhF gene − 108156 110378 2223 Locate
rpl32 gene + 110882 111058 177 Locate
trnL-UAG gene + 111779 111858 80 Locate
ccsA gene + 111955 112926 972 Locate
ndhD gene − 113097 114623 1527 Locate
psaC gene − 114724 114969 246 Locate
ndhE gene − 115229 115534 306 Locate
ndhG gene − 115750 116280 531 Locate
ndhI gene − 116645 117151 507 Locate
ndhA gene − 117238 119392 2155 Locate
ndhH gene − 119394 120575 1182 Locate
rps15 gene − 120676 120948 273 Locate
ycf1 gene − 121384 126900 5517 Locate
trnN-GUU gene + 127226 127297 72 Locate
trnR-ACG gene − 127870 127948 79 Locate
rrn5 gene − 128178 128298 121 Locate
rrn4.5 gene − 128554 128656 103 Locate
rrn23 gene − 128755 131565 2811 Locate
trnA-UGC gene − 131757 132635 879 Locate
trnI-GAU gene − 132700 133715 1016 Locate
rrn16 gene − 134005 135495 1491 Locate
trnV-GAC gene − 135723 135794 72 Locate
rps12 gene + 137414 138207 794 Locate
rps7 gene + 138261 138728 468 Locate
ndhB gene + 139003 141214 2212 Locate
trnL-CAA gene + 141759 141839 81 Locate
ycf15 gene − 142100 142348 249 Locate
ycf2 gene − 142388 149254 6867 Locate
trnI-CAU gene + 149343 149416 74 Locate
rpl23 gene + 149582 149863 282 Locate
rpl2 gene + 149882 151373 1492 Locate
Status Available
Accession PQ279583.1
Length 151,466 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 0
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources