Lagopsis eriostachya chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231082.1 · 2–75 bp · −
psbA · PQ231082.1 · 309–1,367 bp · −
trnK-UUU · PQ231082.1 · 1,600–4,187 bp · −
matK · PQ231082.1 · 1,902–3,437 bp · −
rps16 · PQ231082.1 · 5,100–6,243 bp · −
trnQ-UUG · PQ231082.1 · 6,925–6,996 bp · −
trnS-GGA · PQ231082.1 · 8,142–8,229 bp · −
atpA · PQ231082.1 · 10,031–11,554 bp · −
atpF · PQ231082.1 · 11,642–12,851 bp · −
atpH · PQ231082.1 · 13,221–13,466 bp · −
atpI · PQ231082.1 · 14,401–15,144 bp · −
rps2 · PQ231082.1 · 15,375–16,085 bp · −
rpoC2 · PQ231082.1 · 16,305–20,489 bp · −
rpoC1 · PQ231082.1 · 20,644–23,490 bp · −
rpoB · PQ231082.1 · 23,517–26,729 bp · −
psbM · PQ231082.1 · 29,630–29,734 bp · −
trnD-GUC · PQ231082.1 · 30,264–30,337 bp · −
trnY-GUA · PQ231082.1 · 30,452–30,535 bp · −
trnE-UUC · PQ231082.1 · 30,595–30,667 bp · −
trnT-CGU · PQ231082.1 · 31,240–31,311 bp · −
trnS-UGA · PQ231082.1 · 35,109–35,201 bp · −
trnfM-CAU · PQ231082.1 · 36,162–36,235 bp · −
rps14 · PQ231082.1 · 36,385–36,687 bp · −
psaB · PQ231082.1 · 36,815–39,019 bp · −
psaA · PQ231082.1 · 39,045–41,297 bp · −
ycf3 · PQ231082.1 · 42,027–43,960 bp · −
rps4 · PQ231082.1 · 44,648–45,253 bp · −
trnT-UGU · PQ231082.1 · 45,641–45,713 bp · −
ndhJ · PQ231082.1 · 48,001–48,495 bp · −
ndhK · PQ231082.1 · 48,578–49,255 bp · −
ndhC · PQ231082.1 · 49,308–49,670 bp · −
trnV-UAC · PQ231082.1 · 50,658–51,310 bp · −
atpE · PQ231082.1 · 51,789–52,190 bp · −
atpB · PQ231082.1 · 52,187–53,683 bp · −
psbJ · PQ231082.1 · 63,363–63,485 bp · −
psbL · PQ231082.1 · 63,623–63,739 bp · −
psbF · PQ231082.1 · 63,763–63,882 bp · −
psbE · PQ231082.1 · 63,897–64,148 bp · −
trnW-CCA · PQ231082.1 · 65,582–65,655 bp · −
trnP-UGG · PQ231082.1 · 65,807–65,880 bp · −
rpl20 · PQ231082.1 · 67,632–68,018 bp · −
rps12 · PQ231082.1 · 68,780–68,893 bp · −
rps12 · PQ231082.1 · 96,160–96,953 bp · −
clpP · PQ231082.1 · 69,033–70,918 bp · −
psbN · PQ231082.1 · 73,237–73,368 bp · −
rpoA · PQ231082.1 · 76,790–77,809 bp · −
rps11 · PQ231082.1 · 77,881–78,312 bp · −
rpl36 · PQ231082.1 · 78,400–78,513 bp · −
infA · PQ231082.1 · 78,609–78,848 bp · −
rps8 · PQ231082.1 · 78,971–79,384 bp · −
rpl14 · PQ231082.1 · 79,566–79,934 bp · −
rpl16 · PQ231082.1 · 80,061–81,352 bp · −
rps3 · PQ231082.1 · 81,499–82,161 bp · −
rpl22 · PQ231082.1 · 82,146–82,610 bp · −
rps19 · PQ231082.1 · 82,670–82,948 bp · −
rpl2 · PQ231082.1 · 83,001–84,491 bp · −
rpl23 · PQ231082.1 · 84,510–84,791 bp · −
trnI-CAU · PQ231082.1 · 84,957–85,030 bp · −
trnL-CAA · PQ231082.1 · 92,528–92,608 bp · −
ndhB · PQ231082.1 · 93,153–95,364 bp · −
rps7 · PQ231082.1 · 95,639–96,106 bp · −
trnN-GUU · PQ231082.1 · 107,029–107,100 bp · −
ndhF · PQ231082.1 · 108,484–110,706 bp · −
ndhD · PQ231082.1 · 113,278–114,798 bp · −
psaC · PQ231082.1 · 114,899–115,144 bp · −
ndhE · PQ231082.1 · 115,410–115,715 bp · −
ndhG · PQ231082.1 · 115,923–116,453 bp · −
ndhI · PQ231082.1 · 116,827–117,333 bp · −
ndhA · PQ231082.1 · 117,420–119,590 bp · −
ndhH · PQ231082.1 · 119,592–120,773 bp · −
rps15 · PQ231082.1 · 120,874–121,146 bp · −
ycf1 · PQ231082.1 · 121,534–127,026 bp · −
trnR-ACG · PQ231082.1 · 127,990–128,068 bp · −
rrn5 · PQ231082.1 · 128,298–128,418 bp · −
rrn4.5 · PQ231082.1 · 128,643–128,745 bp · −
rrn23 · PQ231082.1 · 128,844–131,654 bp · −
trnA-UGC · PQ231082.1 · 131,846–132,724 bp · −
trnI-GAU · PQ231082.1 · 132,789–133,797 bp · −
rrn16 · PQ231082.1 · 134,087–135,577 bp · −
trnV-GAC · PQ231082.1 · 135,805–135,876 bp · −
ycf15 · PQ231082.1 · 142,179–142,427 bp · −
ycf2 · PQ231082.1 · 142,470–149,327 bp · −
psbK · PQ231082.1 · 7,333–7,518 bp · +
psbI · PQ231082.1 · 7,903–8,013 bp · +
trnG-UCC · PQ231082.1 · 8,913–9,677 bp · +
trnR-UCU · PQ231082.1 · 9,860–9,934 bp · +
trnC-GCA · PQ231082.1 · 27,825–27,900 bp · +
petN · PQ231082.1 · 28,756–28,845 bp · +
psbD · PQ231082.1 · 32,445–33,506 bp · +
psbC · PQ231082.1 · 33,454–34,875 bp · +
psbZ · PQ231082.1 · 35,528–35,716 bp · +
trnG-GCC · PQ231082.1 · 35,943–36,013 bp · +
trnS-GGA · PQ231082.1 · 44,277–44,363 bp · +
trnL-UAA · PQ231082.1 · 46,393–46,966 bp · +
trnF-GAA · PQ231082.1 · 47,258–47,330 bp · +
trnM-CAU · PQ231082.1 · 51,499–51,571 bp · +
rbcL · PQ231082.1 · 54,471–55,937 bp · +
accD · PQ231082.1 · 56,627–58,093 bp · +
psaI · PQ231082.1 · 58,778–58,888 bp · +
ycf4 · PQ231082.1 · 59,327–59,881 bp · +
cemA · PQ231082.1 · 60,442–61,131 bp · +
petA · PQ231082.1 · 61,348–62,310 bp · +
petL · PQ231082.1 · 65,072–65,167 bp · +
petG · PQ231082.1 · 65,343–65,456 bp · +
psaJ · PQ231082.1 · 66,155–66,289 bp · +
rpl33 · PQ231082.1 · 66,763–66,963 bp · +
rps18 · PQ231082.1 · 67,111–67,416 bp · +
rps12 · PQ231082.1 · 137,493–138,286 bp · +
psbB · PQ231082.1 · 71,350–72,876 bp · +
psbT · PQ231082.1 · 73,069–73,176 bp · +
psbH · PQ231082.1 · 73,472–73,693 bp · +
petB · PQ231082.1 · 73,818–75,202 bp · +
petD · PQ231082.1 · 75,397–76,621 bp · +
ycf2 · PQ231082.1 · 85,119–91,976 bp · +
ycf15 · PQ231082.1 · 92,019–92,267 bp · +
trnV-GAC · PQ231082.1 · 98,570–98,641 bp · +
rrn16 · PQ231082.1 · 98,869–100,359 bp · +
trnI-GAU · PQ231082.1 · 100,649–101,657 bp · +
trnA-UGC · PQ231082.1 · 101,722–102,600 bp · +
rrn23 · PQ231082.1 · 102,792–105,602 bp · +
rrn4.5 · PQ231082.1 · 105,701–105,803 bp · +
rrn5 · PQ231082.1 · 106,028–106,148 bp · +
trnR-ACG · PQ231082.1 · 106,378–106,456 bp · +
rpl32 · PQ231082.1 · 111,214–111,390 bp · +
trnL-UAG · PQ231082.1 · 111,957–112,036 bp · +
ccsA · PQ231082.1 · 112,137–113,099 bp · +
trnN-GUU · PQ231082.1 · 127,346–127,417 bp · +
rps7 · PQ231082.1 · 138,340–138,807 bp · +
ndhB · PQ231082.1 · 139,082–141,293 bp · +
trnL-CAA · PQ231082.1 · 141,838–141,918 bp · +
trnI-CAU · PQ231082.1 · 149,416–149,489 bp · +
rpl23 · PQ231082.1 · 149,655–149,936 bp · +
rpl2 · PQ231082.1 · 149,955–151,445 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagopsis eriostachya
ANNOTATED PLASTOME
PQ231082.1
151,539 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37885 75770 113654 151539 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 309 1367 1059 Locate
trnK-UUU gene − 1600 4187 2588 Locate
matK gene − 1902 3437 1536 Locate
rps16 gene − 5100 6243 1144 Locate
trnQ-UUG gene − 6925 6996 72 Locate
psbK gene + 7333 7518 186 Locate
psbI gene + 7903 8013 111 Locate
trnS-GGA gene − 8142 8229 88 Locate
trnG-UCC gene + 8913 9677 765 Locate
trnR-UCU gene + 9860 9934 75 Locate
atpA gene − 10031 11554 1524 Locate
atpF gene − 11642 12851 1210 Locate
atpH gene − 13221 13466 246 Locate
atpI gene − 14401 15144 744 Locate
rps2 gene − 15375 16085 711 Locate
rpoC2 gene − 16305 20489 4185 Locate
rpoC1 gene − 20644 23490 2847 Locate
rpoB gene − 23517 26729 3213 Locate
trnC-GCA gene + 27825 27900 76 Locate
petN gene + 28756 28845 90 Locate
psbM gene − 29630 29734 105 Locate
trnD-GUC gene − 30264 30337 74 Locate
trnY-GUA gene − 30452 30535 84 Locate
trnE-UUC gene − 30595 30667 73 Locate
trnT-CGU gene − 31240 31311 72 Locate
psbD gene + 32445 33506 1062 Locate
psbC gene + 33454 34875 1422 Locate
trnS-UGA gene − 35109 35201 93 Locate
psbZ gene + 35528 35716 189 Locate
trnG-GCC gene + 35943 36013 71 Locate
trnfM-CAU gene − 36162 36235 74 Locate
rps14 gene − 36385 36687 303 Locate
psaB gene − 36815 39019 2205 Locate
psaA gene − 39045 41297 2253 Locate
ycf3 gene − 42027 43960 1934 Locate
trnS-GGA gene + 44277 44363 87 Locate
rps4 gene − 44648 45253 606 Locate
trnT-UGU gene − 45641 45713 73 Locate
trnL-UAA gene + 46393 46966 574 Locate
trnF-GAA gene + 47258 47330 73 Locate
ndhJ gene − 48001 48495 495 Locate
ndhK gene − 48578 49255 678 Locate
ndhC gene − 49308 49670 363 Locate
trnV-UAC gene − 50658 51310 653 Locate
trnM-CAU gene + 51499 51571 73 Locate
atpE gene − 51789 52190 402 Locate
atpB gene − 52187 53683 1497 Locate
rbcL gene + 54471 55937 1467 Locate
accD gene + 56627 58093 1467 Locate
psaI gene + 58778 58888 111 Locate
ycf4 gene + 59327 59881 555 Locate
cemA gene + 60442 61131 690 Locate
petA gene + 61348 62310 963 Locate
psbJ gene − 63363 63485 123 Locate
psbL gene − 63623 63739 117 Locate
psbF gene − 63763 63882 120 Locate
psbE gene − 63897 64148 252 Locate
petL gene + 65072 65167 96 Locate
petG gene + 65343 65456 114 Locate
trnW-CCA gene − 65582 65655 74 Locate
trnP-UGG gene − 65807 65880 74 Locate
psaJ gene + 66155 66289 135 Locate
rpl33 gene + 66763 66963 201 Locate
rps18 gene + 67111 67416 306 Locate
rpl20 gene − 67632 68018 387 Locate
rps12 gene − 68780 68893 114 Locate
clpP gene − 69033 70918 1886 Locate
psbB gene + 71350 72876 1527 Locate
psbT gene + 73069 73176 108 Locate
psbN gene − 73237 73368 132 Locate
psbH gene + 73472 73693 222 Locate
petB gene + 73818 75202 1385 Locate
petD gene + 75397 76621 1225 Locate
rpoA gene − 76790 77809 1020 Locate
rps11 gene − 77881 78312 432 Locate
rpl36 gene − 78400 78513 114 Locate
infA gene − 78609 78848 240 Locate
rps8 gene − 78971 79384 414 Locate
rpl14 gene − 79566 79934 369 Locate
rpl16 gene − 80061 81352 1292 Locate
rps3 gene − 81499 82161 663 Locate
rpl22 gene − 82146 82610 465 Locate
rps19 gene − 82670 82948 279 Locate
rpl2 gene − 83001 84491 1491 Locate
rpl23 gene − 84510 84791 282 Locate
trnI-CAU gene − 84957 85030 74 Locate
ycf2 gene + 85119 91976 6858 Locate
ycf15 gene + 92019 92267 249 Locate
trnL-CAA gene − 92528 92608 81 Locate
ndhB gene − 93153 95364 2212 Locate
rps7 gene − 95639 96106 468 Locate
rps12 gene − 96160 96953 794 Locate
trnV-GAC gene + 98570 98641 72 Locate
rrn16 gene + 98869 100359 1491 Locate
trnI-GAU gene + 100649 101657 1009 Locate
trnA-UGC gene + 101722 102600 879 Locate
rrn23 gene + 102792 105602 2811 Locate
rrn4.5 gene + 105701 105803 103 Locate
rrn5 gene + 106028 106148 121 Locate
trnR-ACG gene + 106378 106456 79 Locate
trnN-GUU gene − 107029 107100 72 Locate
ndhF gene − 108484 110706 2223 Locate
rpl32 gene + 111214 111390 177 Locate
trnL-UAG gene + 111957 112036 80 Locate
ccsA gene + 112137 113099 963 Locate
ndhD gene − 113278 114798 1521 Locate
psaC gene − 114899 115144 246 Locate
ndhE gene − 115410 115715 306 Locate
ndhG gene − 115923 116453 531 Locate
ndhI gene − 116827 117333 507 Locate
ndhA gene − 117420 119590 2171 Locate
ndhH gene − 119592 120773 1182 Locate
rps15 gene − 120874 121146 273 Locate
ycf1 gene − 121534 127026 5493 Locate
trnN-GUU gene + 127346 127417 72 Locate
trnR-ACG gene − 127990 128068 79 Locate
rrn5 gene − 128298 128418 121 Locate
rrn4.5 gene − 128643 128745 103 Locate
rrn23 gene − 128844 131654 2811 Locate
trnA-UGC gene − 131846 132724 879 Locate
trnI-GAU gene − 132789 133797 1009 Locate
rrn16 gene − 134087 135577 1491 Locate
trnV-GAC gene − 135805 135876 72 Locate
rps12 gene + 137493 138286 794 Locate
rps7 gene + 138340 138807 468 Locate
ndhB gene + 139082 141293 2212 Locate
trnL-CAA gene + 141838 141918 81 Locate
ycf15 gene − 142179 142427 249 Locate
ycf2 gene − 142470 149327 6858 Locate
trnI-CAU gene + 149416 149489 74 Locate
rpl23 gene + 149655 149936 282 Locate
rpl2 gene + 149955 151445 1491 Locate
Status Available
Accession PQ231082.1
Length 151,539 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources