Lagopsis flava chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231086.1 · 2–75 bp · −
psbA · PQ231086.1 · 300–1,358 bp · −
trnK-UUU · PQ231086.1 · 1,591–4,178 bp · −
matK · PQ231086.1 · 1,893–3,428 bp · −
rps16 · PQ231086.1 · 5,092–6,235 bp · −
trnQ-UUG · PQ231086.1 · 6,912–6,983 bp · −
trnS-GGA · PQ231086.1 · 8,129–8,216 bp · −
atpA · PQ231086.1 · 10,009–11,532 bp · −
atpF · PQ231086.1 · 11,620–12,829 bp · −
atpH · PQ231086.1 · 13,204–13,449 bp · −
atpI · PQ231086.1 · 14,384–15,127 bp · −
rps2 · PQ231086.1 · 15,358–16,068 bp · −
rpoC2 · PQ231086.1 · 16,288–20,478 bp · −
rpoC1 · PQ231086.1 · 20,633–23,465 bp · −
rpoB · PQ231086.1 · 23,492–26,704 bp · −
psbM · PQ231086.1 · 29,574–29,678 bp · −
trnD-GUC · PQ231086.1 · 30,208–30,281 bp · −
trnY-GUA · PQ231086.1 · 30,396–30,479 bp · −
trnE-UUC · PQ231086.1 · 30,539–30,611 bp · −
trnT-CGU · PQ231086.1 · 31,183–31,254 bp · −
trnS-UGA · PQ231086.1 · 35,071–35,163 bp · −
trnfM-CAU · PQ231086.1 · 36,125–36,198 bp · −
rps14 · PQ231086.1 · 36,348–36,650 bp · −
psaB · PQ231086.1 · 36,778–38,982 bp · −
psaA · PQ231086.1 · 39,008–41,260 bp · −
ycf3 · PQ231086.1 · 41,990–43,924 bp · −
rps4 · PQ231086.1 · 44,625–45,230 bp · −
trnT-UGU · PQ231086.1 · 45,616–45,688 bp · −
ndhJ · PQ231086.1 · 47,975–48,469 bp · −
ndhK · PQ231086.1 · 48,552–49,229 bp · −
ndhC · PQ231086.1 · 49,282–49,644 bp · −
trnV-UAC · PQ231086.1 · 50,607–51,258 bp · −
atpE · PQ231086.1 · 51,737–52,138 bp · −
atpB · PQ231086.1 · 52,135–53,631 bp · −
psbJ · PQ231086.1 · 63,330–63,452 bp · −
psbL · PQ231086.1 · 63,590–63,706 bp · −
psbF · PQ231086.1 · 63,730–63,849 bp · −
psbE · PQ231086.1 · 63,864–64,115 bp · −
trnW-CCA · PQ231086.1 · 65,548–65,621 bp · −
trnP-UGG · PQ231086.1 · 65,773–65,846 bp · −
rpl20 · PQ231086.1 · 67,590–67,976 bp · −
rps12 · PQ231086.1 · 68,744–68,857 bp · −
rps12 · PQ231086.1 · 96,122–96,915 bp · −
clpP · PQ231086.1 · 68,991–70,862 bp · −
psbN · PQ231086.1 · 73,180–73,311 bp · −
rpoA · PQ231086.1 · 76,752–77,771 bp · −
rps11 · PQ231086.1 · 77,843–78,274 bp · −
rpl36 · PQ231086.1 · 78,362–78,475 bp · −
infA · PQ231086.1 · 78,571–78,810 bp · −
rps8 · PQ231086.1 · 78,934–79,347 bp · −
rpl14 · PQ231086.1 · 79,529–79,897 bp · −
rpl16 · PQ231086.1 · 80,024–81,315 bp · −
rps3 · PQ231086.1 · 81,462–82,124 bp · −
rpl22 · PQ231086.1 · 82,109–82,573 bp · −
rps19 · PQ231086.1 · 82,633–82,911 bp · −
rpl2 · PQ231086.1 · 82,963–84,453 bp · −
rpl23 · PQ231086.1 · 84,472–84,753 bp · −
trnI-CAU · PQ231086.1 · 84,919–84,992 bp · −
trnL-CAA · PQ231086.1 · 92,490–92,570 bp · −
ndhB · PQ231086.1 · 93,115–95,326 bp · −
rps7 · PQ231086.1 · 95,601–96,068 bp · −
trnN-GUU · PQ231086.1 · 107,028–107,099 bp · −
ndhF · PQ231086.1 · 108,489–110,717 bp · −
ndhD · PQ231086.1 · 113,469–114,989 bp · −
psaC · PQ231086.1 · 115,090–115,335 bp · −
ndhE · PQ231086.1 · 115,601–115,906 bp · −
ndhG · PQ231086.1 · 116,114–116,644 bp · −
ndhI · PQ231086.1 · 117,018–117,524 bp · −
ndhA · PQ231086.1 · 117,611–119,784 bp · −
ndhH · PQ231086.1 · 119,786–120,967 bp · −
rps15 · PQ231086.1 · 121,068–121,340 bp · −
ycf1 · PQ231086.1 · 121,727–127,219 bp · −
trnR-ACG · PQ231086.1 · 128,189–128,267 bp · −
rrn5 · PQ231086.1 · 128,497–128,617 bp · −
rrn4.5 · PQ231086.1 · 128,873–128,975 bp · −
rrn23 · PQ231086.1 · 129,074–131,884 bp · −
trnA-UGC · PQ231086.1 · 132,076–132,960 bp · −
trnI-GAU · PQ231086.1 · 133,025–134,033 bp · −
rrn16 · PQ231086.1 · 134,323–135,813 bp · −
trnV-GAC · PQ231086.1 · 136,041–136,112 bp · −
ycf15 · PQ231086.1 · 142,415–142,663 bp · −
ycf2 · PQ231086.1 · 142,706–149,563 bp · −
psbK · PQ231086.1 · 7,320–7,505 bp · +
psbI · PQ231086.1 · 7,889–7,999 bp · +
trnG-UCC · PQ231086.1 · 8,900–9,664 bp · +
trnR-UCU · PQ231086.1 · 9,838–9,912 bp · +
trnC-GCA · PQ231086.1 · 27,800–27,875 bp · +
petN · PQ231086.1 · 28,695–28,784 bp · +
psbD · PQ231086.1 · 32,409–33,470 bp · +
psbC · PQ231086.1 · 33,418–34,839 bp · +
psbZ · PQ231086.1 · 35,490–35,678 bp · +
trnG-GCC · PQ231086.1 · 35,906–35,976 bp · +
trnS-GGA · PQ231086.1 · 44,252–44,338 bp · +
trnL-UAA · PQ231086.1 · 46,367–46,940 bp · +
trnF-GAA · PQ231086.1 · 47,232–47,304 bp · +
trnM-CAU · PQ231086.1 · 51,447–51,519 bp · +
rbcL · PQ231086.1 · 54,419–55,885 bp · +
accD · PQ231086.1 · 56,575–58,041 bp · +
psaI · PQ231086.1 · 58,739–58,849 bp · +
ycf4 · PQ231086.1 · 59,288–59,842 bp · +
cemA · PQ231086.1 · 60,403–61,092 bp · +
petA · PQ231086.1 · 61,309–62,271 bp · +
petL · PQ231086.1 · 65,038–65,133 bp · +
petG · PQ231086.1 · 65,309–65,422 bp · +
psaJ · PQ231086.1 · 66,121–66,255 bp · +
rpl33 · PQ231086.1 · 66,721–66,921 bp · +
rps18 · PQ231086.1 · 67,069–67,374 bp · +
rps12 · PQ231086.1 · 137,729–138,522 bp · +
psbB · PQ231086.1 · 71,294–72,820 bp · +
psbT · PQ231086.1 · 73,012–73,119 bp · +
psbH · PQ231086.1 · 73,415–73,636 bp · +
petB · PQ231086.1 · 73,761–75,144 bp · +
petD · PQ231086.1 · 75,359–76,583 bp · +
ycf2 · PQ231086.1 · 85,081–91,938 bp · +
ycf15 · PQ231086.1 · 91,981–92,229 bp · +
trnV-GAC · PQ231086.1 · 98,532–98,603 bp · +
rrn16 · PQ231086.1 · 98,831–100,321 bp · +
trnI-GAU · PQ231086.1 · 100,611–101,619 bp · +
trnA-UGC · PQ231086.1 · 101,684–102,568 bp · +
rrn23 · PQ231086.1 · 102,760–105,570 bp · +
rrn4.5 · PQ231086.1 · 105,669–105,771 bp · +
rrn5 · PQ231086.1 · 106,027–106,147 bp · +
trnR-ACG · PQ231086.1 · 106,377–106,455 bp · +
rpl32 · PQ231086.1 · 111,242–111,418 bp · +
trnL-UAG · PQ231086.1 · 112,142–112,221 bp · +
ccsA · PQ231086.1 · 112,322–113,284 bp · +
trnN-GUU · PQ231086.1 · 127,545–127,616 bp · +
rps7 · PQ231086.1 · 138,576–139,043 bp · +
ndhB · PQ231086.1 · 139,318–141,529 bp · +
trnL-CAA · PQ231086.1 · 142,074–142,154 bp · +
trnI-CAU · PQ231086.1 · 149,652–149,725 bp · +
rpl23 · PQ231086.1 · 149,891–150,172 bp · +
rpl2 · PQ231086.1 · 150,191–151,681 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lagopsis flava
ANNOTATED PLASTOME
PQ231086.1
151,774 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37944 75887 113830 151774 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 300 1358 1059 Locate
trnK-UUU gene − 1591 4178 2588 Locate
matK gene − 1893 3428 1536 Locate
rps16 gene − 5092 6235 1144 Locate
trnQ-UUG gene − 6912 6983 72 Locate
psbK gene + 7320 7505 186 Locate
psbI gene + 7889 7999 111 Locate
trnS-GGA gene − 8129 8216 88 Locate
trnG-UCC gene + 8900 9664 765 Locate
trnR-UCU gene + 9838 9912 75 Locate
atpA gene − 10009 11532 1524 Locate
atpF gene − 11620 12829 1210 Locate
atpH gene − 13204 13449 246 Locate
atpI gene − 14384 15127 744 Locate
rps2 gene − 15358 16068 711 Locate
rpoC2 gene − 16288 20478 4191 Locate
rpoC1 gene − 20633 23465 2833 Locate
rpoB gene − 23492 26704 3213 Locate
trnC-GCA gene + 27800 27875 76 Locate
petN gene + 28695 28784 90 Locate
psbM gene − 29574 29678 105 Locate
trnD-GUC gene − 30208 30281 74 Locate
trnY-GUA gene − 30396 30479 84 Locate
trnE-UUC gene − 30539 30611 73 Locate
trnT-CGU gene − 31183 31254 72 Locate
psbD gene + 32409 33470 1062 Locate
psbC gene + 33418 34839 1422 Locate
trnS-UGA gene − 35071 35163 93 Locate
psbZ gene + 35490 35678 189 Locate
trnG-GCC gene + 35906 35976 71 Locate
trnfM-CAU gene − 36125 36198 74 Locate
rps14 gene − 36348 36650 303 Locate
psaB gene − 36778 38982 2205 Locate
psaA gene − 39008 41260 2253 Locate
ycf3 gene − 41990 43924 1935 Locate
trnS-GGA gene + 44252 44338 87 Locate
rps4 gene − 44625 45230 606 Locate
trnT-UGU gene − 45616 45688 73 Locate
trnL-UAA gene + 46367 46940 574 Locate
trnF-GAA gene + 47232 47304 73 Locate
ndhJ gene − 47975 48469 495 Locate
ndhK gene − 48552 49229 678 Locate
ndhC gene − 49282 49644 363 Locate
trnV-UAC gene − 50607 51258 652 Locate
trnM-CAU gene + 51447 51519 73 Locate
atpE gene − 51737 52138 402 Locate
atpB gene − 52135 53631 1497 Locate
rbcL gene + 54419 55885 1467 Locate
accD gene + 56575 58041 1467 Locate
psaI gene + 58739 58849 111 Locate
ycf4 gene + 59288 59842 555 Locate
cemA gene + 60403 61092 690 Locate
petA gene + 61309 62271 963 Locate
psbJ gene − 63330 63452 123 Locate
psbL gene − 63590 63706 117 Locate
psbF gene − 63730 63849 120 Locate
psbE gene − 63864 64115 252 Locate
petL gene + 65038 65133 96 Locate
petG gene + 65309 65422 114 Locate
trnW-CCA gene − 65548 65621 74 Locate
trnP-UGG gene − 65773 65846 74 Locate
psaJ gene + 66121 66255 135 Locate
rpl33 gene + 66721 66921 201 Locate
rps18 gene + 67069 67374 306 Locate
rpl20 gene − 67590 67976 387 Locate
rps12 gene − 68744 68857 114 Locate
clpP gene − 68991 70862 1872 Locate
psbB gene + 71294 72820 1527 Locate
psbT gene + 73012 73119 108 Locate
psbN gene − 73180 73311 132 Locate
psbH gene + 73415 73636 222 Locate
petB gene + 73761 75144 1384 Locate
petD gene + 75359 76583 1225 Locate
rpoA gene − 76752 77771 1020 Locate
rps11 gene − 77843 78274 432 Locate
rpl36 gene − 78362 78475 114 Locate
infA gene − 78571 78810 240 Locate
rps8 gene − 78934 79347 414 Locate
rpl14 gene − 79529 79897 369 Locate
rpl16 gene − 80024 81315 1292 Locate
rps3 gene − 81462 82124 663 Locate
rpl22 gene − 82109 82573 465 Locate
rps19 gene − 82633 82911 279 Locate
rpl2 gene − 82963 84453 1491 Locate
rpl23 gene − 84472 84753 282 Locate
trnI-CAU gene − 84919 84992 74 Locate
ycf2 gene + 85081 91938 6858 Locate
ycf15 gene + 91981 92229 249 Locate
trnL-CAA gene − 92490 92570 81 Locate
ndhB gene − 93115 95326 2212 Locate
rps7 gene − 95601 96068 468 Locate
rps12 gene − 96122 96915 794 Locate
trnV-GAC gene + 98532 98603 72 Locate
rrn16 gene + 98831 100321 1491 Locate
trnI-GAU gene + 100611 101619 1009 Locate
trnA-UGC gene + 101684 102568 885 Locate
rrn23 gene + 102760 105570 2811 Locate
rrn4.5 gene + 105669 105771 103 Locate
rrn5 gene + 106027 106147 121 Locate
trnR-ACG gene + 106377 106455 79 Locate
trnN-GUU gene − 107028 107099 72 Locate
ndhF gene − 108489 110717 2229 Locate
rpl32 gene + 111242 111418 177 Locate
trnL-UAG gene + 112142 112221 80 Locate
ccsA gene + 112322 113284 963 Locate
ndhD gene − 113469 114989 1521 Locate
psaC gene − 115090 115335 246 Locate
ndhE gene − 115601 115906 306 Locate
ndhG gene − 116114 116644 531 Locate
ndhI gene − 117018 117524 507 Locate
ndhA gene − 117611 119784 2174 Locate
ndhH gene − 119786 120967 1182 Locate
rps15 gene − 121068 121340 273 Locate
ycf1 gene − 121727 127219 5493 Locate
trnN-GUU gene + 127545 127616 72 Locate
trnR-ACG gene − 128189 128267 79 Locate
rrn5 gene − 128497 128617 121 Locate
rrn4.5 gene − 128873 128975 103 Locate
rrn23 gene − 129074 131884 2811 Locate
trnA-UGC gene − 132076 132960 885 Locate
trnI-GAU gene − 133025 134033 1009 Locate
rrn16 gene − 134323 135813 1491 Locate
trnV-GAC gene − 136041 136112 72 Locate
rps12 gene + 137729 138522 794 Locate
rps7 gene + 138576 139043 468 Locate
ndhB gene + 139318 141529 2212 Locate
trnL-CAA gene + 142074 142154 81 Locate
ycf15 gene − 142415 142663 249 Locate
ycf2 gene − 142706 149563 6858 Locate
trnI-CAU gene + 149652 149725 74 Locate
rpl23 gene + 149891 150172 282 Locate
rpl2 gene + 150191 151681 1491 Locate
Status Available
Accession PQ231086.1
Length 151,774 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources