Lamium amplexicaule chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231089.1 · 2–75 bp · −
psbA · PQ231089.1 · 306–1,364 bp · −
trnK-UUU · PQ231089.1 · 1,602–4,186 bp · −
matK · PQ231089.1 · 1,900–3,435 bp · −
rps16 · PQ231089.1 · 5,120–6,262 bp · −
trnQ-UUG · PQ231089.1 · 7,228–7,299 bp · −
trnS-GGA · PQ231089.1 · 8,408–8,495 bp · −
atpA · PQ231089.1 · 10,152–11,675 bp · −
atpF · PQ231089.1 · 11,794–13,014 bp · −
atpH · PQ231089.1 · 13,365–13,610 bp · −
atpI · PQ231089.1 · 14,603–15,346 bp · −
rps2 · PQ231089.1 · 15,577–16,287 bp · −
rpoC2 · PQ231089.1 · 16,509–20,681 bp · −
rpoC1 · PQ231089.1 · 20,826–23,658 bp · −
rpoB · PQ231089.1 · 23,685–26,894 bp · −
psbM · PQ231089.1 · 29,630–29,734 bp · −
trnD-GUC · PQ231089.1 · 30,266–30,339 bp · −
trnY-GUA · PQ231089.1 · 30,452–30,535 bp · −
trnE-UUC · PQ231089.1 · 30,595–30,667 bp · −
trnT-CGU · PQ231089.1 · 31,250–31,321 bp · −
trnS-UGA · PQ231089.1 · 35,220–35,312 bp · −
trnfM-CAU · PQ231089.1 · 36,266–36,339 bp · −
rps14 · PQ231089.1 · 36,489–36,791 bp · −
psaB · PQ231089.1 · 36,919–39,123 bp · −
psaA · PQ231089.1 · 39,149–41,401 bp · −
ycf3 · PQ231089.1 · 42,148–44,088 bp · −
rps4 · PQ231089.1 · 44,765–45,370 bp · −
trnT-UGU · PQ231089.1 · 45,755–45,827 bp · −
ndhJ · PQ231089.1 · 48,082–48,576 bp · −
ndhK · PQ231089.1 · 48,659–49,336 bp · −
ndhC · PQ231089.1 · 49,390–49,752 bp · −
trnV-UAC · PQ231089.1 · 50,698–51,345 bp · −
atpE · PQ231089.1 · 51,831–52,232 bp · −
atpB · PQ231089.1 · 52,229–53,725 bp · −
psbJ · PQ231089.1 · 63,391–63,513 bp · −
psbL · PQ231089.1 · 63,651–63,767 bp · −
psbF · PQ231089.1 · 63,791–63,910 bp · −
psbE · PQ231089.1 · 63,925–64,176 bp · −
trnW-CCA · PQ231089.1 · 65,608–65,681 bp · −
trnP-UGG · PQ231089.1 · 65,844–65,917 bp · −
rpl20 · PQ231089.1 · 67,661–68,047 bp · −
rps12 · PQ231089.1 · 68,789–68,902 bp · −
rps12 · PQ231089.1 · 95,635–96,424 bp · −
clpP · PQ231089.1 · 69,028–70,904 bp · −
psbN · PQ231089.1 · 73,223–73,354 bp · −
rpoA · PQ231089.1 · 76,732–77,763 bp · −
rps11 · PQ231089.1 · 77,835–78,266 bp · −
rpl36 · PQ231089.1 · 78,354–78,467 bp · −
infA · PQ231089.1 · 78,563–78,796 bp · −
rps8 · PQ231089.1 · 78,916–79,329 bp · −
rpl14 · PQ231089.1 · 79,489–79,857 bp · −
rpl16 · PQ231089.1 · 79,989–81,259 bp · −
rps3 · PQ231089.1 · 81,406–82,068 bp · −
rpl22 · PQ231089.1 · 82,053–82,517 bp · −
rps19 · PQ231089.1 · 82,577–82,855 bp · −
rpl2 · PQ231089.1 · 82,908–84,399 bp · −
rpl23 · PQ231089.1 · 84,418–84,699 bp · −
trnI-CAU · PQ231089.1 · 84,865–84,938 bp · −
trnL-CAA · PQ231089.1 · 92,002–92,082 bp · −
ndhB · PQ231089.1 · 92,627–94,838 bp · −
rps7 · PQ231089.1 · 95,114–95,581 bp · −
trnN-GUU · PQ231089.1 · 106,505–106,576 bp · −
ndhF · PQ231089.1 · 107,966–110,182 bp · −
ndhD · PQ231089.1 · 112,884–114,404 bp · −
psaC · PQ231089.1 · 114,504–114,749 bp · −
ndhE · PQ231089.1 · 114,926–115,231 bp · −
ndhG · PQ231089.1 · 115,448–115,978 bp · −
ndhI · PQ231089.1 · 116,370–116,876 bp · −
ndhA · PQ231089.1 · 116,963–119,122 bp · −
ndhH · PQ231089.1 · 119,124–120,305 bp · −
rps15 · PQ231089.1 · 120,406–120,678 bp · −
ycf1 · PQ231089.1 · 121,058–126,562 bp · −
trnR-ACG · PQ231089.1 · 127,506–127,584 bp · −
rrn5 · PQ231089.1 · 127,814–127,934 bp · −
rrn4.5 · PQ231089.1 · 128,186–128,288 bp · −
rrn23 · PQ231089.1 · 128,387–131,197 bp · −
trnA-UGC · PQ231089.1 · 131,398–132,276 bp · −
trnI-GAU · PQ231089.1 · 132,341–133,344 bp · −
rrn16 · PQ231089.1 · 133,634–135,124 bp · −
trnV-GAC · PQ231089.1 · 135,352–135,423 bp · −
ycf15 · PQ231089.1 · 141,723–141,971 bp · −
ycf2 · PQ231089.1 · 142,014–148,436 bp · −
psbK · PQ231089.1 · 7,636–7,797 bp · +
psbI · PQ231089.1 · 8,184–8,294 bp · +
trnG-UCC · PQ231089.1 · 9,055–9,811 bp · +
trnR-UCU · PQ231089.1 · 9,981–10,055 bp · +
trnC-GCA · PQ231089.1 · 28,010–28,085 bp · +
petN · PQ231089.1 · 28,922–29,011 bp · +
psbD · PQ231089.1 · 32,567–33,628 bp · +
psbC · PQ231089.1 · 33,576–34,997 bp · +
psbZ · PQ231089.1 · 35,639–35,827 bp · +
trnG-GCC · PQ231089.1 · 36,053–36,123 bp · +
trnS-GGA · PQ231089.1 · 44,405–44,491 bp · +
trnL-UAA · PQ231089.1 · 46,516–47,082 bp · +
trnF-GAA · PQ231089.1 · 47,374–47,446 bp · +
trnM-CAU · PQ231089.1 · 51,534–51,606 bp · +
rbcL · PQ231089.1 · 54,509–55,993 bp · +
accD · PQ231089.1 · 56,706–58,163 bp · +
psaI · PQ231089.1 · 58,804–58,908 bp · +
ycf4 · PQ231089.1 · 59,348–59,902 bp · +
cemA · PQ231089.1 · 60,466–61,155 bp · +
petA · PQ231089.1 · 61,380–62,342 bp · +
petL · PQ231089.1 · 65,097–65,192 bp · +
petG · PQ231089.1 · 65,369–65,482 bp · +
psaJ · PQ231089.1 · 66,191–66,319 bp · +
rpl33 · PQ231089.1 · 66,797–66,997 bp · +
rps18 · PQ231089.1 · 67,146–67,451 bp · +
rps12 · PQ231089.1 · 137,040–137,829 bp · +
psbB · PQ231089.1 · 71,333–72,859 bp · +
psbT · PQ231089.1 · 73,047–73,154 bp · +
psbH · PQ231089.1 · 73,459–73,680 bp · +
petB · PQ231089.1 · 73,805–75,185 bp · +
petD · PQ231089.1 · 75,380–76,593 bp · +
ycf2 · PQ231089.1 · 85,028–91,450 bp · +
ycf15 · PQ231089.1 · 91,493–91,741 bp · +
trnV-GAC · PQ231089.1 · 98,041–98,112 bp · +
rrn16 · PQ231089.1 · 98,340–99,830 bp · +
trnI-GAU · PQ231089.1 · 100,120–101,123 bp · +
trnA-UGC · PQ231089.1 · 101,188–102,066 bp · +
rrn23 · PQ231089.1 · 102,267–105,077 bp · +
rrn4.5 · PQ231089.1 · 105,176–105,278 bp · +
rrn5 · PQ231089.1 · 105,530–105,650 bp · +
trnR-ACG · PQ231089.1 · 105,880–105,958 bp · +
rpl32 · PQ231089.1 · 110,679–110,855 bp · +
trnL-UAG · PQ231089.1 · 111,570–111,649 bp · +
ccsA · PQ231089.1 · 111,733–112,704 bp · +
trnN-GUU · PQ231089.1 · 126,888–126,959 bp · +
rps7 · PQ231089.1 · 137,883–138,350 bp · +
ndhB · PQ231089.1 · 138,626–140,837 bp · +
trnL-CAA · PQ231089.1 · 141,382–141,462 bp · +
trnI-CAU · PQ231089.1 · 148,526–148,599 bp · +
rpl23 · PQ231089.1 · 148,765–149,046 bp · +
rpl2 · PQ231089.1 · 149,065–150,556 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lamium amplexicaule
ANNOTATED PLASTOME
PQ231089.1
150,650 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37662 75325 112988 150650 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 306 1364 1059 Locate
trnK-UUU gene − 1602 4186 2585 Locate
matK gene − 1900 3435 1536 Locate
rps16 gene − 5120 6262 1143 Locate
trnQ-UUG gene − 7228 7299 72 Locate
psbK gene + 7636 7797 162 Locate
psbI gene + 8184 8294 111 Locate
trnS-GGA gene − 8408 8495 88 Locate
trnG-UCC gene + 9055 9811 757 Locate
trnR-UCU gene + 9981 10055 75 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11794 13014 1221 Locate
atpH gene − 13365 13610 246 Locate
atpI gene − 14603 15346 744 Locate
rps2 gene − 15577 16287 711 Locate
rpoC2 gene − 16509 20681 4173 Locate
rpoC1 gene − 20826 23658 2833 Locate
rpoB gene − 23685 26894 3210 Locate
trnC-GCA gene + 28010 28085 76 Locate
petN gene + 28922 29011 90 Locate
psbM gene − 29630 29734 105 Locate
trnD-GUC gene − 30266 30339 74 Locate
trnY-GUA gene − 30452 30535 84 Locate
trnE-UUC gene − 30595 30667 73 Locate
trnT-CGU gene − 31250 31321 72 Locate
psbD gene + 32567 33628 1062 Locate
psbC gene + 33576 34997 1422 Locate
trnS-UGA gene − 35220 35312 93 Locate
psbZ gene + 35639 35827 189 Locate
trnG-GCC gene + 36053 36123 71 Locate
trnfM-CAU gene − 36266 36339 74 Locate
rps14 gene − 36489 36791 303 Locate
psaB gene − 36919 39123 2205 Locate
psaA gene − 39149 41401 2253 Locate
ycf3 gene − 42148 44088 1941 Locate
trnS-GGA gene + 44405 44491 87 Locate
rps4 gene − 44765 45370 606 Locate
trnT-UGU gene − 45755 45827 73 Locate
trnL-UAA gene + 46516 47082 567 Locate
trnF-GAA gene + 47374 47446 73 Locate
ndhJ gene − 48082 48576 495 Locate
ndhK gene − 48659 49336 678 Locate
ndhC gene − 49390 49752 363 Locate
trnV-UAC gene − 50698 51345 648 Locate
trnM-CAU gene + 51534 51606 73 Locate
atpE gene − 51831 52232 402 Locate
atpB gene − 52229 53725 1497 Locate
rbcL gene + 54509 55993 1485 Locate
accD gene + 56706 58163 1458 Locate
psaI gene + 58804 58908 105 Locate
ycf4 gene + 59348 59902 555 Locate
cemA gene + 60466 61155 690 Locate
petA gene + 61380 62342 963 Locate
psbJ gene − 63391 63513 123 Locate
psbL gene − 63651 63767 117 Locate
psbF gene − 63791 63910 120 Locate
psbE gene − 63925 64176 252 Locate
petL gene + 65097 65192 96 Locate
petG gene + 65369 65482 114 Locate
trnW-CCA gene − 65608 65681 74 Locate
trnP-UGG gene − 65844 65917 74 Locate
psaJ gene + 66191 66319 129 Locate
rpl33 gene + 66797 66997 201 Locate
rps18 gene + 67146 67451 306 Locate
rpl20 gene − 67661 68047 387 Locate
rps12 gene − 68789 68902 114 Locate
clpP gene − 69028 70904 1877 Locate
psbB gene + 71333 72859 1527 Locate
psbT gene + 73047 73154 108 Locate
psbN gene − 73223 73354 132 Locate
psbH gene + 73459 73680 222 Locate
petB gene + 73805 75185 1381 Locate
petD gene + 75380 76593 1214 Locate
rpoA gene − 76732 77763 1032 Locate
rps11 gene − 77835 78266 432 Locate
rpl36 gene − 78354 78467 114 Locate
infA gene − 78563 78796 234 Locate
rps8 gene − 78916 79329 414 Locate
rpl14 gene − 79489 79857 369 Locate
rpl16 gene − 79989 81259 1271 Locate
rps3 gene − 81406 82068 663 Locate
rpl22 gene − 82053 82517 465 Locate
rps19 gene − 82577 82855 279 Locate
rpl2 gene − 82908 84399 1492 Locate
rpl23 gene − 84418 84699 282 Locate
trnI-CAU gene − 84865 84938 74 Locate
ycf2 gene + 85028 91450 6423 Locate
ycf15 gene + 91493 91741 249 Locate
trnL-CAA gene − 92002 92082 81 Locate
ndhB gene − 92627 94838 2212 Locate
rps7 gene − 95114 95581 468 Locate
rps12 gene − 95635 96424 790 Locate
trnV-GAC gene + 98041 98112 72 Locate
rrn16 gene + 98340 99830 1491 Locate
trnI-GAU gene + 100120 101123 1004 Locate
trnA-UGC gene + 101188 102066 879 Locate
rrn23 gene + 102267 105077 2811 Locate
rrn4.5 gene + 105176 105278 103 Locate
rrn5 gene + 105530 105650 121 Locate
trnR-ACG gene + 105880 105958 79 Locate
trnN-GUU gene − 106505 106576 72 Locate
ndhF gene − 107966 110182 2217 Locate
rpl32 gene + 110679 110855 177 Locate
trnL-UAG gene + 111570 111649 80 Locate
ccsA gene + 111733 112704 972 Locate
ndhD gene − 112884 114404 1521 Locate
psaC gene − 114504 114749 246 Locate
ndhE gene − 114926 115231 306 Locate
ndhG gene − 115448 115978 531 Locate
ndhI gene − 116370 116876 507 Locate
ndhA gene − 116963 119122 2160 Locate
ndhH gene − 119124 120305 1182 Locate
rps15 gene − 120406 120678 273 Locate
ycf1 gene − 121058 126562 5505 Locate
trnN-GUU gene + 126888 126959 72 Locate
trnR-ACG gene − 127506 127584 79 Locate
rrn5 gene − 127814 127934 121 Locate
rrn4.5 gene − 128186 128288 103 Locate
rrn23 gene − 128387 131197 2811 Locate
trnA-UGC gene − 131398 132276 879 Locate
trnI-GAU gene − 132341 133344 1004 Locate
rrn16 gene − 133634 135124 1491 Locate
trnV-GAC gene − 135352 135423 72 Locate
rps12 gene + 137040 137829 790 Locate
rps7 gene + 137883 138350 468 Locate
ndhB gene + 138626 140837 2212 Locate
trnL-CAA gene + 141382 141462 81 Locate
ycf15 gene − 141723 141971 249 Locate
ycf2 gene − 142014 148436 6423 Locate
trnI-CAU gene + 148526 148599 74 Locate
rpl23 gene + 148765 149046 282 Locate
rpl2 gene + 149065 150556 1492 Locate
Status Available
Accession PQ231089.1
Length 150,650 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources