Loxocalyx urticifolius chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231101.1 · 6–79 bp · −
psbA · PQ231101.1 · 312–1,370 bp · −
trnK-UUU · PQ231101.1 · 1,603–4,192 bp · −
matK · PQ231101.1 · 1,905–3,440 bp · −
rps16 · PQ231101.1 · 5,109–6,249 bp · −
trnQ-UUG · PQ231101.1 · 7,233–7,304 bp · −
trnS-GGA · PQ231101.1 · 8,441–8,528 bp · −
atpA · PQ231101.1 · 10,310–11,833 bp · −
atpF · PQ231101.1 · 11,922–13,134 bp · −
atpH · PQ231101.1 · 13,498–13,743 bp · −
atpI · PQ231101.1 · 14,721–15,464 bp · −
rps2 · PQ231101.1 · 15,695–16,405 bp · −
rpoC2 · PQ231101.1 · 16,625–20,815 bp · −
rpoC1 · PQ231101.1 · 20,970–23,808 bp · −
rpoB · PQ231101.1 · 23,835–27,047 bp · −
psbM · PQ231101.1 · 29,934–30,038 bp · −
trnD-GUC · PQ231101.1 · 30,583–30,656 bp · −
trnY-GUA · PQ231101.1 · 30,771–30,854 bp · −
trnE-UUC · PQ231101.1 · 30,914–30,986 bp · −
trnT-CGU · PQ231101.1 · 31,573–31,644 bp · −
trnS-UGA · PQ231101.1 · 35,559–35,651 bp · −
trnfM-CAU · PQ231101.1 · 36,555–36,628 bp · −
rps14 · PQ231101.1 · 36,778–37,080 bp · −
psaB · PQ231101.1 · 37,208–39,412 bp · −
psaA · PQ231101.1 · 39,438–41,690 bp · −
ycf3 · PQ231101.1 · 42,416–44,360 bp · −
rps4 · PQ231101.1 · 45,047–45,652 bp · −
trnT-UGU · PQ231101.1 · 46,051–46,123 bp · −
ndhJ · PQ231101.1 · 48,412–48,906 bp · −
ndhK · PQ231101.1 · 48,989–49,666 bp · −
ndhC · PQ231101.1 · 49,720–50,082 bp · −
trnV-UAC · PQ231101.1 · 50,745–51,403 bp · −
atpE · PQ231101.1 · 51,882–52,283 bp · −
atpB · PQ231101.1 · 52,280–53,776 bp · −
psbJ · PQ231101.1 · 63,472–63,594 bp · −
psbL · PQ231101.1 · 63,732–63,848 bp · −
psbF · PQ231101.1 · 63,872–63,991 bp · −
psbE · PQ231101.1 · 64,006–64,257 bp · −
trnW-CCA · PQ231101.1 · 65,696–65,769 bp · −
trnP-UGG · PQ231101.1 · 65,933–66,006 bp · −
rpl20 · PQ231101.1 · 67,759–68,145 bp · −
rps12 · PQ231101.1 · 68,901–69,014 bp · −
rps12 · PQ231101.1 · 96,234–97,027 bp · −
clpP · PQ231101.1 · 69,140–71,011 bp · −
psbN · PQ231101.1 · 73,329–73,460 bp · −
rpoA · PQ231101.1 · 76,878–77,891 bp · −
rps11 · PQ231101.1 · 77,963–78,394 bp · −
rpl36 · PQ231101.1 · 78,482–78,595 bp · −
infA · PQ231101.1 · 78,691–78,924 bp · −
rps8 · PQ231101.1 · 79,047–79,460 bp · −
rpl14 · PQ231101.1 · 79,633–80,001 bp · −
rpl16 · PQ231101.1 · 80,128–81,407 bp · −
rps3 · PQ231101.1 · 81,554–82,216 bp · −
rpl22 · PQ231101.1 · 82,201–82,665 bp · −
rps19 · PQ231101.1 · 82,725–83,003 bp · −
rpl2 · PQ231101.1 · 83,056–84,547 bp · −
rpl23 · PQ231101.1 · 84,566–84,847 bp · −
trnI-CAU · PQ231101.1 · 85,013–85,086 bp · −
trnL-CAA · PQ231101.1 · 92,602–92,682 bp · −
ndhB · PQ231101.1 · 93,227–95,438 bp · −
rps7 · PQ231101.1 · 95,713–96,180 bp · −
trnN-GUU · PQ231101.1 · 107,153–107,224 bp · −
ndhF · PQ231101.1 · 108,614–110,836 bp · −
ndhD · PQ231101.1 · 113,573–115,093 bp · −
psaC · PQ231101.1 · 115,199–115,444 bp · −
ndhE · PQ231101.1 · 115,707–116,012 bp · −
ndhG · PQ231101.1 · 116,229–116,759 bp · −
ndhI · PQ231101.1 · 117,125–117,631 bp · −
ndhA · PQ231101.1 · 117,718–119,884 bp · −
ndhH · PQ231101.1 · 119,886–121,067 bp · −
rps15 · PQ231101.1 · 121,168–121,440 bp · −
ycf1 · PQ231101.1 · 121,825–127,365 bp · −
trnR-ACG · PQ231101.1 · 128,332–128,410 bp · −
rrn5 · PQ231101.1 · 128,640–128,760 bp · −
rrn4.5 · PQ231101.1 · 129,016–129,118 bp · −
rrn23 · PQ231101.1 · 129,217–132,027 bp · −
trnA-UGC · PQ231101.1 · 132,219–133,097 bp · −
trnI-GAU · PQ231101.1 · 133,162–134,170 bp · −
rrn16 · PQ231101.1 · 134,460–135,950 bp · −
trnV-GAC · PQ231101.1 · 136,178–136,249 bp · −
ycf15 · PQ231101.1 · 142,565–142,813 bp · −
ycf2 · PQ231101.1 · 142,856–149,740 bp · −
psbK · PQ231101.1 · 7,641–7,826 bp · +
psbI · PQ231101.1 · 8,205–8,315 bp · +
trnG-UCC · PQ231101.1 · 9,215–9,965 bp · +
trnR-UCU · PQ231101.1 · 10,139–10,213 bp · +
trnC-GCA · PQ231101.1 · 28,149–28,224 bp · +
petN · PQ231101.1 · 29,060–29,149 bp · +
psbD · PQ231101.1 · 32,897–33,958 bp · +
psbC · PQ231101.1 · 33,906–35,327 bp · +
psbZ · PQ231101.1 · 35,916–36,104 bp · +
trnG-GCC · PQ231101.1 · 36,336–36,406 bp · +
trnS-GGA · PQ231101.1 · 44,677–44,763 bp · +
trnL-UAA · PQ231101.1 · 46,805–47,378 bp · +
trnF-GAA · PQ231101.1 · 47,670–47,742 bp · +
trnM-CAU · PQ231101.1 · 51,592–51,664 bp · +
rbcL · PQ231101.1 · 54,570–56,036 bp · +
accD · PQ231101.1 · 56,734–58,200 bp · +
psaI · PQ231101.1 · 58,885–58,995 bp · +
ycf4 · PQ231101.1 · 59,434–59,988 bp · +
cemA · PQ231101.1 · 60,559–61,248 bp · +
petA · PQ231101.1 · 61,465–62,427 bp · +
petL · PQ231101.1 · 65,187–65,282 bp · +
petG · PQ231101.1 · 65,457–65,570 bp · +
psaJ · PQ231101.1 · 66,281–66,415 bp · +
rpl33 · PQ231101.1 · 66,888–67,088 bp · +
rps18 · PQ231101.1 · 67,236–67,541 bp · +
rps12 · PQ231101.1 · 137,888–138,681 bp · +
psbB · PQ231101.1 · 71,442–72,968 bp · +
psbT · PQ231101.1 · 73,161–73,268 bp · +
psbH · PQ231101.1 · 73,564–73,785 bp · +
petB · PQ231101.1 · 73,910–75,301 bp · +
petD · PQ231101.1 · 75,496–76,709 bp · +
ycf2 · PQ231101.1 · 85,175–92,059 bp · +
ycf15 · PQ231101.1 · 92,102–92,350 bp · +
trnV-GAC · PQ231101.1 · 98,666–98,737 bp · +
rrn16 · PQ231101.1 · 98,965–100,455 bp · +
trnI-GAU · PQ231101.1 · 100,745–101,753 bp · +
trnA-UGC · PQ231101.1 · 101,818–102,696 bp · +
rrn23 · PQ231101.1 · 102,888–105,698 bp · +
rrn4.5 · PQ231101.1 · 105,797–105,899 bp · +
rrn5 · PQ231101.1 · 106,155–106,275 bp · +
trnR-ACG · PQ231101.1 · 106,505–106,583 bp · +
rpl32 · PQ231101.1 · 111,343–111,519 bp · +
trnL-UAG · PQ231101.1 · 112,249–112,328 bp · +
ccsA · PQ231101.1 · 112,419–113,390 bp · +
trnN-GUU · PQ231101.1 · 127,691–127,762 bp · +
rps7 · PQ231101.1 · 138,735–139,202 bp · +
ndhB · PQ231101.1 · 139,477–141,688 bp · +
trnL-CAA · PQ231101.1 · 142,233–142,313 bp · +
trnI-CAU · PQ231101.1 · 149,829–149,902 bp · +
rpl23 · PQ231101.1 · 150,068–150,349 bp · +
rpl2 · PQ231101.1 · 150,368–151,859 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Loxocalyx urticifolius
ANNOTATED PLASTOME
PQ231101.1
151,974 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37994 75987 113980 151974 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 6 79 74 Locate
psbA gene − 312 1370 1059 Locate
trnK-UUU gene − 1603 4192 2590 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5109 6249 1141 Locate
trnQ-UUG gene − 7233 7304 72 Locate
psbK gene + 7641 7826 186 Locate
psbI gene + 8205 8315 111 Locate
trnS-GGA gene − 8441 8528 88 Locate
trnG-UCC gene + 9215 9965 751 Locate
trnR-UCU gene + 10139 10213 75 Locate
atpA gene − 10310 11833 1524 Locate
atpF gene − 11922 13134 1213 Locate
atpH gene − 13498 13743 246 Locate
atpI gene − 14721 15464 744 Locate
rps2 gene − 15695 16405 711 Locate
rpoC2 gene − 16625 20815 4191 Locate
rpoC1 gene − 20970 23808 2839 Locate
rpoB gene − 23835 27047 3213 Locate
trnC-GCA gene + 28149 28224 76 Locate
petN gene + 29060 29149 90 Locate
psbM gene − 29934 30038 105 Locate
trnD-GUC gene − 30583 30656 74 Locate
trnY-GUA gene − 30771 30854 84 Locate
trnE-UUC gene − 30914 30986 73 Locate
trnT-CGU gene − 31573 31644 72 Locate
psbD gene + 32897 33958 1062 Locate
psbC gene + 33906 35327 1422 Locate
trnS-UGA gene − 35559 35651 93 Locate
psbZ gene + 35916 36104 189 Locate
trnG-GCC gene + 36336 36406 71 Locate
trnfM-CAU gene − 36555 36628 74 Locate
rps14 gene − 36778 37080 303 Locate
psaB gene − 37208 39412 2205 Locate
psaA gene − 39438 41690 2253 Locate
ycf3 gene − 42416 44360 1945 Locate
trnS-GGA gene + 44677 44763 87 Locate
rps4 gene − 45047 45652 606 Locate
trnT-UGU gene − 46051 46123 73 Locate
trnL-UAA gene + 46805 47378 574 Locate
trnF-GAA gene + 47670 47742 73 Locate
ndhJ gene − 48412 48906 495 Locate
ndhK gene − 48989 49666 678 Locate
ndhC gene − 49720 50082 363 Locate
trnV-UAC gene − 50745 51403 659 Locate
trnM-CAU gene + 51592 51664 73 Locate
atpE gene − 51882 52283 402 Locate
atpB gene − 52280 53776 1497 Locate
rbcL gene + 54570 56036 1467 Locate
accD gene + 56734 58200 1467 Locate
psaI gene + 58885 58995 111 Locate
ycf4 gene + 59434 59988 555 Locate
cemA gene + 60559 61248 690 Locate
petA gene + 61465 62427 963 Locate
psbJ gene − 63472 63594 123 Locate
psbL gene − 63732 63848 117 Locate
psbF gene − 63872 63991 120 Locate
psbE gene − 64006 64257 252 Locate
petL gene + 65187 65282 96 Locate
petG gene + 65457 65570 114 Locate
trnW-CCA gene − 65696 65769 74 Locate
trnP-UGG gene − 65933 66006 74 Locate
psaJ gene + 66281 66415 135 Locate
rpl33 gene + 66888 67088 201 Locate
rps18 gene + 67236 67541 306 Locate
rpl20 gene − 67759 68145 387 Locate
rps12 gene − 68901 69014 114 Locate
clpP gene − 69140 71011 1872 Locate
psbB gene + 71442 72968 1527 Locate
psbT gene + 73161 73268 108 Locate
psbN gene − 73329 73460 132 Locate
psbH gene + 73564 73785 222 Locate
petB gene + 73910 75301 1392 Locate
petD gene + 75496 76709 1214 Locate
rpoA gene − 76878 77891 1014 Locate
rps11 gene − 77963 78394 432 Locate
rpl36 gene − 78482 78595 114 Locate
infA gene − 78691 78924 234 Locate
rps8 gene − 79047 79460 414 Locate
rpl14 gene − 79633 80001 369 Locate
rpl16 gene − 80128 81407 1280 Locate
rps3 gene − 81554 82216 663 Locate
rpl22 gene − 82201 82665 465 Locate
rps19 gene − 82725 83003 279 Locate
rpl2 gene − 83056 84547 1492 Locate
rpl23 gene − 84566 84847 282 Locate
trnI-CAU gene − 85013 85086 74 Locate
ycf2 gene + 85175 92059 6885 Locate
ycf15 gene + 92102 92350 249 Locate
trnL-CAA gene − 92602 92682 81 Locate
ndhB gene − 93227 95438 2212 Locate
rps7 gene − 95713 96180 468 Locate
rps12 gene − 96234 97027 794 Locate
trnV-GAC gene + 98666 98737 72 Locate
rrn16 gene + 98965 100455 1491 Locate
trnI-GAU gene + 100745 101753 1009 Locate
trnA-UGC gene + 101818 102696 879 Locate
rrn23 gene + 102888 105698 2811 Locate
rrn4.5 gene + 105797 105899 103 Locate
rrn5 gene + 106155 106275 121 Locate
trnR-ACG gene + 106505 106583 79 Locate
trnN-GUU gene − 107153 107224 72 Locate
ndhF gene − 108614 110836 2223 Locate
rpl32 gene + 111343 111519 177 Locate
trnL-UAG gene + 112249 112328 80 Locate
ccsA gene + 112419 113390 972 Locate
ndhD gene − 113573 115093 1521 Locate
psaC gene − 115199 115444 246 Locate
ndhE gene − 115707 116012 306 Locate
ndhG gene − 116229 116759 531 Locate
ndhI gene − 117125 117631 507 Locate
ndhA gene − 117718 119884 2167 Locate
ndhH gene − 119886 121067 1182 Locate
rps15 gene − 121168 121440 273 Locate
ycf1 gene − 121825 127365 5541 Locate
trnN-GUU gene + 127691 127762 72 Locate
trnR-ACG gene − 128332 128410 79 Locate
rrn5 gene − 128640 128760 121 Locate
rrn4.5 gene − 129016 129118 103 Locate
rrn23 gene − 129217 132027 2811 Locate
trnA-UGC gene − 132219 133097 879 Locate
trnI-GAU gene − 133162 134170 1009 Locate
rrn16 gene − 134460 135950 1491 Locate
trnV-GAC gene − 136178 136249 72 Locate
rps12 gene + 137888 138681 794 Locate
rps7 gene + 138735 139202 468 Locate
ndhB gene + 139477 141688 2212 Locate
trnL-CAA gene + 142233 142313 81 Locate
ycf15 gene − 142565 142813 249 Locate
ycf2 gene − 142856 149740 6885 Locate
trnI-CAU gene + 149829 149902 74 Locate
rpl23 gene + 150068 150349 282 Locate
rpl2 gene + 150368 151859 1492 Locate
Status Available
Accession PQ231101.1
Length 151,974 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources