Marrubium vulgare chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231104.1 · 2–75 bp · −
psbA · PQ231104.1 · 304–1,362 bp · −
trnK-UUU · PQ231104.1 · 1,595–4,181 bp · −
matK · PQ231104.1 · 1,905–3,479 bp · −
rps16 · PQ231104.1 · 5,116–6,262 bp · −
trnQ-UUG · PQ231104.1 · 7,233–7,304 bp · −
trnS-GGA · PQ231104.1 · 8,435–8,522 bp · −
atpA · PQ231104.1 · 10,293–11,816 bp · −
atpF · PQ231104.1 · 11,903–13,137 bp · −
atpH · PQ231104.1 · 13,496–13,741 bp · −
atpI · PQ231104.1 · 14,726–15,469 bp · −
rps2 · PQ231104.1 · 15,700–16,410 bp · −
rpoC2 · PQ231104.1 · 16,633–20,829 bp · −
rpoC1 · PQ231104.1 · 20,984–23,811 bp · −
rpoB · PQ231104.1 · 23,838–27,050 bp · −
psbM · PQ231104.1 · 29,911–30,015 bp · −
trnD-GUC · PQ231104.1 · 30,556–30,629 bp · −
trnY-GUA · PQ231104.1 · 30,735–30,818 bp · −
trnE-UUC · PQ231104.1 · 30,878–30,950 bp · −
trnT-CGU · PQ231104.1 · 31,520–31,591 bp · −
trnS-UGA · PQ231104.1 · 35,366–35,458 bp · −
trnfM-CAU · PQ231104.1 · 36,423–36,496 bp · −
rps14 · PQ231104.1 · 36,649–36,951 bp · −
psaB · PQ231104.1 · 37,079–39,283 bp · −
psaA · PQ231104.1 · 39,309–41,561 bp · −
ycf3 · PQ231104.1 · 42,280–44,208 bp · −
rps4 · PQ231104.1 · 44,889–45,494 bp · −
trnT-UGU · PQ231104.1 · 45,892–45,964 bp · −
ndhJ · PQ231104.1 · 48,254–48,730 bp · −
ndhK · PQ231104.1 · 48,831–49,508 bp · −
ndhC · PQ231104.1 · 49,562–49,924 bp · −
trnV-UAC · PQ231104.1 · 50,786–51,455 bp · −
atpE · PQ231104.1 · 51,941–52,342 bp · −
atpB · PQ231104.1 · 52,339–53,835 bp · −
psbJ · PQ231104.1 · 63,500–63,622 bp · −
psbL · PQ231104.1 · 63,760–63,876 bp · −
psbF · PQ231104.1 · 63,900–64,019 bp · −
psbE · PQ231104.1 · 64,034–64,285 bp · −
trnW-CCA · PQ231104.1 · 65,735–65,808 bp · −
trnP-UGG · PQ231104.1 · 65,972–66,045 bp · −
rpl20 · PQ231104.1 · 67,741–68,115 bp · −
rps12 · PQ231104.1 · 68,858–68,971 bp · −
rps12 · PQ231104.1 · 96,128–96,923 bp · −
clpP · PQ231104.1 · 69,102–70,964 bp · −
psbN · PQ231104.1 · 73,279–73,410 bp · −
rpoA · PQ231104.1 · 76,816–77,829 bp · −
rps11 · PQ231104.1 · 77,901–78,317 bp · −
rpl36 · PQ231104.1 · 78,434–78,547 bp · −
infA · PQ231104.1 · 78,643–78,876 bp · −
rps8 · PQ231104.1 · 78,994–79,407 bp · −
rpl14 · PQ231104.1 · 79,581–79,949 bp · −
rpl16 · PQ231104.1 · 80,076–81,376 bp · −
rps3 · PQ231104.1 · 81,523–82,185 bp · −
rpl22 · PQ231104.1 · 82,170–82,634 bp · −
rps19 · PQ231104.1 · 82,693–82,971 bp · −
rpl2 · PQ231104.1 · 83,030–84,514 bp · −
rpl23 · PQ231104.1 · 84,533–84,814 bp · −
trnI-CAU · PQ231104.1 · 84,923–84,996 bp · −
trnL-CAA · PQ231104.1 · 92,506–92,586 bp · −
ndhB · PQ231104.1 · 93,121–95,332 bp · −
rps7 · PQ231104.1 · 95,607–96,074 bp · −
trnN-GUU · PQ231104.1 · 107,025–107,096 bp · −
ndhF · PQ231104.1 · 108,486–110,708 bp · −
ndhD · PQ231104.1 · 113,439–114,965 bp · −
psaC · PQ231104.1 · 115,062–115,307 bp · −
ndhE · PQ231104.1 · 115,564–115,869 bp · −
ndhG · PQ231104.1 · 116,085–116,615 bp · −
ndhI · PQ231104.1 · 116,989–117,495 bp · −
ndhA · PQ231104.1 · 117,581–119,737 bp · −
ndhH · PQ231104.1 · 119,739–120,920 bp · −
rps15 · PQ231104.1 · 121,021–121,293 bp · −
ycf1 · PQ231104.1 · 121,679–127,228 bp · −
trnR-ACG · PQ231104.1 · 128,198–128,276 bp · −
rrn5 · PQ231104.1 · 128,506–128,626 bp · −
rrn4.5 · PQ231104.1 · 128,882–128,984 bp · −
rrn23 · PQ231104.1 · 129,083–131,893 bp · −
trnA-UGC · PQ231104.1 · 132,085–132,963 bp · −
trnI-GAU · PQ231104.1 · 133,028–134,036 bp · −
rrn16 · PQ231104.1 · 134,326–135,816 bp · −
trnV-GAC · PQ231104.1 · 136,044–136,115 bp · −
ycf15 · PQ231104.1 · 142,405–142,653 bp · −
ycf2 · PQ231104.1 · 142,696–149,565 bp · −
psbK · PQ231104.1 · 7,640–7,825 bp · +
psbI · PQ231104.1 · 8,203–8,313 bp · +
trnG-UCC · PQ231104.1 · 9,199–9,955 bp · +
trnR-UCU · PQ231104.1 · 10,122–10,196 bp · +
trnC-GCA · PQ231104.1 · 28,147–28,222 bp · +
petN · PQ231104.1 · 29,059–29,148 bp · +
psbD · PQ231104.1 · 32,701–33,762 bp · +
psbC · PQ231104.1 · 33,710–35,131 bp · +
psbZ · PQ231104.1 · 35,791–35,979 bp · +
trnG-GCC · PQ231104.1 · 36,204–36,274 bp · +
trnS-GGA · PQ231104.1 · 44,520–44,606 bp · +
trnL-UAA · PQ231104.1 · 46,650–47,223 bp · +
trnF-GAA · PQ231104.1 · 47,521–47,593 bp · +
trnM-CAU · PQ231104.1 · 51,644–51,716 bp · +
rbcL · PQ231104.1 · 54,623–56,089 bp · +
accD · PQ231104.1 · 56,780–58,237 bp · +
psaI · PQ231104.1 · 58,976–59,086 bp · +
ycf4 · PQ231104.1 · 59,541–60,095 bp · +
cemA · PQ231104.1 · 60,650–61,339 bp · +
petA · PQ231104.1 · 61,545–62,507 bp · +
petL · PQ231104.1 · 65,222–65,317 bp · +
petG · PQ231104.1 · 65,492–65,605 bp · +
psaJ · PQ231104.1 · 66,318–66,452 bp · +
rpl33 · PQ231104.1 · 66,927–67,127 bp · +
rps18 · PQ231104.1 · 67,278–67,583 bp · +
rps12 · PQ231104.1 · 137,727–138,522 bp · +
psbB · PQ231104.1 · 71,395–72,921 bp · +
psbT · PQ231104.1 · 73,111–73,218 bp · +
psbH · PQ231104.1 · 73,514–73,735 bp · +
petB · PQ231104.1 · 73,860–75,251 bp · +
petD · PQ231104.1 · 75,446–76,653 bp · +
ycf2 · PQ231104.1 · 85,085–91,954 bp · +
ycf15 · PQ231104.1 · 91,997–92,245 bp · +
trnV-GAC · PQ231104.1 · 98,535–98,606 bp · +
rrn16 · PQ231104.1 · 98,834–100,324 bp · +
trnI-GAU · PQ231104.1 · 100,614–101,622 bp · +
trnA-UGC · PQ231104.1 · 101,687–102,565 bp · +
rrn23 · PQ231104.1 · 102,757–105,567 bp · +
rrn4.5 · PQ231104.1 · 105,666–105,768 bp · +
rrn5 · PQ231104.1 · 106,024–106,144 bp · +
trnR-ACG · PQ231104.1 · 106,374–106,452 bp · +
rpl32 · PQ231104.1 · 111,214–111,390 bp · +
trnL-UAG · PQ231104.1 · 112,118–112,197 bp · +
ccsA · PQ231104.1 · 112,288–113,259 bp · +
trnN-GUU · PQ231104.1 · 127,554–127,625 bp · +
rps7 · PQ231104.1 · 138,576–139,043 bp · +
ndhB · PQ231104.1 · 139,318–141,529 bp · +
trnL-CAA · PQ231104.1 · 142,064–142,144 bp · +
trnI-CAU · PQ231104.1 · 149,654–149,727 bp · +
rpl23 · PQ231104.1 · 149,836–150,117 bp · +
rpl2 · PQ231104.1 · 150,136–151,620 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Marrubium vulgare
ANNOTATED PLASTOME
PQ231104.1
151,720 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37930 75860 113790 151720 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 304 1362 1059 Locate
trnK-UUU gene − 1595 4181 2587 Locate
matK gene − 1905 3479 1575 Locate
rps16 gene − 5116 6262 1147 Locate
trnQ-UUG gene − 7233 7304 72 Locate
psbK gene + 7640 7825 186 Locate
psbI gene + 8203 8313 111 Locate
trnS-GGA gene − 8435 8522 88 Locate
trnG-UCC gene + 9199 9955 757 Locate
trnR-UCU gene + 10122 10196 75 Locate
atpA gene − 10293 11816 1524 Locate
atpF gene − 11903 13137 1235 Locate
atpH gene − 13496 13741 246 Locate
atpI gene − 14726 15469 744 Locate
rps2 gene − 15700 16410 711 Locate
rpoC2 gene − 16633 20829 4197 Locate
rpoC1 gene − 20984 23811 2828 Locate
rpoB gene − 23838 27050 3213 Locate
trnC-GCA gene + 28147 28222 76 Locate
petN gene + 29059 29148 90 Locate
psbM gene − 29911 30015 105 Locate
trnD-GUC gene − 30556 30629 74 Locate
trnY-GUA gene − 30735 30818 84 Locate
trnE-UUC gene − 30878 30950 73 Locate
trnT-CGU gene − 31520 31591 72 Locate
psbD gene + 32701 33762 1062 Locate
psbC gene + 33710 35131 1422 Locate
trnS-UGA gene − 35366 35458 93 Locate
psbZ gene + 35791 35979 189 Locate
trnG-GCC gene + 36204 36274 71 Locate
trnfM-CAU gene − 36423 36496 74 Locate
rps14 gene − 36649 36951 303 Locate
psaB gene − 37079 39283 2205 Locate
psaA gene − 39309 41561 2253 Locate
ycf3 gene − 42280 44208 1929 Locate
trnS-GGA gene + 44520 44606 87 Locate
rps4 gene − 44889 45494 606 Locate
trnT-UGU gene − 45892 45964 73 Locate
trnL-UAA gene + 46650 47223 574 Locate
trnF-GAA gene + 47521 47593 73 Locate
ndhJ gene − 48254 48730 477 Locate
ndhK gene − 48831 49508 678 Locate
ndhC gene − 49562 49924 363 Locate
trnV-UAC gene − 50786 51455 670 Locate
trnM-CAU gene + 51644 51716 73 Locate
atpE gene − 51941 52342 402 Locate
atpB gene − 52339 53835 1497 Locate
rbcL gene + 54623 56089 1467 Locate
accD gene + 56780 58237 1458 Locate
psaI gene + 58976 59086 111 Locate
ycf4 gene + 59541 60095 555 Locate
cemA gene + 60650 61339 690 Locate
petA gene + 61545 62507 963 Locate
psbJ gene − 63500 63622 123 Locate
psbL gene − 63760 63876 117 Locate
psbF gene − 63900 64019 120 Locate
psbE gene − 64034 64285 252 Locate
petL gene + 65222 65317 96 Locate
petG gene + 65492 65605 114 Locate
trnW-CCA gene − 65735 65808 74 Locate
trnP-UGG gene − 65972 66045 74 Locate
psaJ gene + 66318 66452 135 Locate
rpl33 gene + 66927 67127 201 Locate
rps18 gene + 67278 67583 306 Locate
rpl20 gene − 67741 68115 375 Locate
rps12 gene − 68858 68971 114 Locate
clpP gene − 69102 70964 1863 Locate
psbB gene + 71395 72921 1527 Locate
psbT gene + 73111 73218 108 Locate
psbN gene − 73279 73410 132 Locate
psbH gene + 73514 73735 222 Locate
petB gene + 73860 75251 1392 Locate
petD gene + 75446 76653 1208 Locate
rpoA gene − 76816 77829 1014 Locate
rps11 gene − 77901 78317 417 Locate
rpl36 gene − 78434 78547 114 Locate
infA gene − 78643 78876 234 Locate
rps8 gene − 78994 79407 414 Locate
rpl14 gene − 79581 79949 369 Locate
rpl16 gene − 80076 81376 1301 Locate
rps3 gene − 81523 82185 663 Locate
rpl22 gene − 82170 82634 465 Locate
rps19 gene − 82693 82971 279 Locate
rpl2 gene − 83030 84514 1485 Locate
rpl23 gene − 84533 84814 282 Locate
trnI-CAU gene − 84923 84996 74 Locate
ycf2 gene + 85085 91954 6870 Locate
ycf15 gene + 91997 92245 249 Locate
trnL-CAA gene − 92506 92586 81 Locate
ndhB gene − 93121 95332 2212 Locate
rps7 gene − 95607 96074 468 Locate
rps12 gene − 96128 96923 796 Locate
trnV-GAC gene + 98535 98606 72 Locate
rrn16 gene + 98834 100324 1491 Locate
trnI-GAU gene + 100614 101622 1009 Locate
trnA-UGC gene + 101687 102565 879 Locate
rrn23 gene + 102757 105567 2811 Locate
rrn4.5 gene + 105666 105768 103 Locate
rrn5 gene + 106024 106144 121 Locate
trnR-ACG gene + 106374 106452 79 Locate
trnN-GUU gene − 107025 107096 72 Locate
ndhF gene − 108486 110708 2223 Locate
rpl32 gene + 111214 111390 177 Locate
trnL-UAG gene + 112118 112197 80 Locate
ccsA gene + 112288 113259 972 Locate
ndhD gene − 113439 114965 1527 Locate
psaC gene − 115062 115307 246 Locate
ndhE gene − 115564 115869 306 Locate
ndhG gene − 116085 116615 531 Locate
ndhI gene − 116989 117495 507 Locate
ndhA gene − 117581 119737 2157 Locate
ndhH gene − 119739 120920 1182 Locate
rps15 gene − 121021 121293 273 Locate
ycf1 gene − 121679 127228 5550 Locate
trnN-GUU gene + 127554 127625 72 Locate
trnR-ACG gene − 128198 128276 79 Locate
rrn5 gene − 128506 128626 121 Locate
rrn4.5 gene − 128882 128984 103 Locate
rrn23 gene − 129083 131893 2811 Locate
trnA-UGC gene − 132085 132963 879 Locate
trnI-GAU gene − 133028 134036 1009 Locate
rrn16 gene − 134326 135816 1491 Locate
trnV-GAC gene − 136044 136115 72 Locate
rps12 gene + 137727 138522 796 Locate
rps7 gene + 138576 139043 468 Locate
ndhB gene + 139318 141529 2212 Locate
trnL-CAA gene + 142064 142144 81 Locate
ycf15 gene − 142405 142653 249 Locate
ycf2 gene − 142696 149565 6870 Locate
trnI-CAU gene + 149654 149727 74 Locate
rpl23 gene + 149836 150117 282 Locate
rpl2 gene + 150136 151620 1485 Locate
Status Available
Accession PQ231104.1
Length 151,720 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources