Coordinate-aware organelle record

Marrubium vulgare chloroplast genome

Available PQ231104.1 151,720 bp 132 coordinate-linked features
IRIR0 kb13 kb26 kb39 kb52 kb65 kb78 kb91 kb104 kb117 kb130 kb143 kbtrnH-GUG · gene · 2-75 bp · − strandpsbA · gene · 304-1,362 bp · − strandtrnK-UUU · gene · 1,595-4,181 bp · − strandmatK · gene · 1,905-3,479 bp · − strandrps16 · gene · 5,116-6,262 bp · − strandtrnQ-UUG · gene · 7,233-7,304 bp · − strandpsbK · gene · 7,640-7,825 bp · + strandpsbI · gene · 8,203-8,313 bp · + strandtrnS-GGA · gene · 8,435-8,522 bp · − strandtrnG-UCC · gene · 9,199-9,955 bp · + strandtrnR-UCU · gene · 10,122-10,196 bp · + strandatpA · gene · 10,293-11,816 bp · − strandatpF · gene · 11,903-13,137 bp · − strandatpH · gene · 13,496-13,741 bp · − strandatpI · gene · 14,726-15,469 bp · − strandrps2 · gene · 15,700-16,410 bp · − strandrpoC2 · gene · 16,633-20,829 bp · − strandrpoC1 · gene · 20,984-23,811 bp · − strandrpoB · gene · 23,838-27,050 bp · − strandtrnC-GCA · gene · 28,147-28,222 bp · + strandpetN · gene · 29,059-29,148 bp · + strandpsbM · gene · 29,911-30,015 bp · − strandtrnD-GUC · gene · 30,556-30,629 bp · − strandtrnY-GUA · gene · 30,735-30,818 bp · − strandtrnE-UUC · gene · 30,878-30,950 bp · − strandtrnT-CGU · gene · 31,520-31,591 bp · − strandpsbD · gene · 32,701-33,762 bp · + strandpsbC · gene · 33,710-35,131 bp · + strandtrnS-UGA · gene · 35,366-35,458 bp · − strandpsbZ · gene · 35,791-35,979 bp · + strandtrnG-GCC · gene · 36,204-36,274 bp · + strandtrnfM-CAU · gene · 36,423-36,496 bp · − strandrps14 · gene · 36,649-36,951 bp · − strandpsaB · gene · 37,079-39,283 bp · − strandpsaA · gene · 39,309-41,561 bp · − strandycf3 · gene · 42,280-44,208 bp · − strandtrnS-GGA · gene · 44,520-44,606 bp · + strandrps4 · gene · 44,889-45,494 bp · − strandtrnT-UGU · gene · 45,892-45,964 bp · − strandtrnL-UAA · gene · 46,650-47,223 bp · + strandtrnF-GAA · gene · 47,521-47,593 bp · + strandndhJ · gene · 48,254-48,730 bp · − strandndhK · gene · 48,831-49,508 bp · − strandndhC · gene · 49,562-49,924 bp · − strandtrnV-UAC · gene · 50,786-51,455 bp · − strandtrnM-CAU · gene · 51,644-51,716 bp · + strandatpE · gene · 51,941-52,342 bp · − strandatpB · gene · 52,339-53,835 bp · − strandrbcL · gene · 54,623-56,089 bp · + strandaccD · gene · 56,780-58,237 bp · + strandpsaI · gene · 58,976-59,086 bp · + strandycf4 · gene · 59,541-60,095 bp · + strandcemA · gene · 60,650-61,339 bp · + strandpetA · gene · 61,545-62,507 bp · + strandpsbJ · gene · 63,500-63,622 bp · − strandpsbL · gene · 63,760-63,876 bp · − strandpsbF · gene · 63,900-64,019 bp · − strandpsbE · gene · 64,034-64,285 bp · − strandpetL · gene · 65,222-65,317 bp · + strandpetG · gene · 65,492-65,605 bp · + strandtrnW-CCA · gene · 65,735-65,808 bp · − strandtrnP-UGG · gene · 65,972-66,045 bp · − strandpsaJ · gene · 66,318-66,452 bp · + strandrpl33 · gene · 66,927-67,127 bp · + strandrps18 · gene · 67,278-67,583 bp · + strandrpl20 · gene · 67,741-68,115 bp · − strandrps12 · gene · 68,858-96,923 bp · − strandrps12 · gene · 68,858-138,522 bp · + strandclpP · gene · 69,102-70,964 bp · − strandpsbB · gene · 71,395-72,921 bp · + strandpsbT · gene · 73,111-73,218 bp · + strandpsbN · gene · 73,279-73,410 bp · − strandpsbH · gene · 73,514-73,735 bp · + strandpetB · gene · 73,860-75,251 bp · + strandpetD · gene · 75,446-76,653 bp · + strandrpoA · gene · 76,816-77,829 bp · − strandrps11 · gene · 77,901-78,317 bp · − strandrpl36 · gene · 78,434-78,547 bp · − strandinfA · gene · 78,643-78,876 bp · − strandrps8 · gene · 78,994-79,407 bp · − strandrpl14 · gene · 79,581-79,949 bp · − strandrpl16 · gene · 80,076-81,376 bp · − strandrps3 · gene · 81,523-82,185 bp · − strandrpl22 · gene · 82,170-82,634 bp · − strandrps19 · gene · 82,693-82,971 bp · − strandrpl2 · gene · 83,030-84,514 bp · − strandrpl23 · gene · 84,533-84,814 bp · − strandtrnI-CAU · gene · 84,923-84,996 bp · − strandycf2 · gene · 85,085-91,954 bp · + strandycf15 · gene · 91,997-92,245 bp · + strandtrnL-CAA · gene · 92,506-92,586 bp · − strandndhB · gene · 93,121-95,332 bp · − strandrps7 · gene · 95,607-96,074 bp · − strandtrnV-GAC · gene · 98,535-98,606 bp · + strandrrn16 · gene · 98,834-100,324 bp · + strandtrnI-GAU · gene · 100,614-101,622 bp · + strandtrnA-UGC · gene · 101,687-102,565 bp · + strandrrn23 · gene · 102,757-105,567 bp · + strandrrn4.5 · gene · 105,666-105,768 bp · + strandrrn5 · gene · 106,024-106,144 bp · + strandtrnR-ACG · gene · 106,374-106,452 bp · + strandtrnN-GUU · gene · 107,025-107,096 bp · − strandndhF · gene · 108,486-110,708 bp · − strandrpl32 · gene · 111,214-111,390 bp · + strandtrnL-UAG · gene · 112,118-112,197 bp · + strandccsA · gene · 112,288-113,259 bp · + strandndhD · gene · 113,439-114,965 bp · − strandpsaC · gene · 115,062-115,307 bp · − strandndhE · gene · 115,564-115,869 bp · − strandndhG · gene · 116,085-116,615 bp · − strandndhI · gene · 116,989-117,495 bp · − strandndhA · gene · 117,581-119,737 bp · − strandndhH · gene · 119,739-120,920 bp · − strandrps15 · gene · 121,021-121,293 bp · − strandycf1 · gene · 121,679-127,228 bp · − strandtrnN-GUU · gene · 127,554-127,625 bp · + strandtrnR-ACG · gene · 128,198-128,276 bp · − strandrrn5 · gene · 128,506-128,626 bp · − strandrrn4.5 · gene · 128,882-128,984 bp · − strandrrn23 · gene · 129,083-131,893 bp · − strandtrnA-UGC · gene · 132,085-132,963 bp · − strandtrnI-GAU · gene · 133,028-134,036 bp · − strandrrn16 · gene · 134,326-135,816 bp · − strandtrnV-GAC · gene · 136,044-136,115 bp · − strandrps7 · gene · 138,576-139,043 bp · + strandndhB · gene · 139,318-141,529 bp · + strandtrnL-CAA · gene · 142,064-142,144 bp · + strandycf15 · gene · 142,405-142,653 bp · − strandycf2 · gene · 142,696-149,565 bp · − strandtrnI-CAU · gene · 149,654-149,727 bp · + strandrpl23 · gene · 149,836-150,117 bp · + strandrpl2 · gene · 150,136-151,620 bp · + strandMarrubium vulgareANNOTATED PLASTOMEPQ231104.1151,720 bp · 132 genesOuter ring: forward strand · inner ring: reverse strand · click a gene to open its pageGene functionTranslation RnaPhotosystem IiOtherRibosomal ProteinAtp SynthaseRna PolymeraseCytochromePhotosystem INad DehydrogenaseRibosomal RnaVerified annotationSource: NCBI GenBankAccession: PQ231104.1Features: 132 coordinate-linked genesHover for coordinates · click for gene page

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features
GeneTypeGroupStrandStartEndLength
trnH-GUGgenetranslation-rna−17574
psbAgenephotosystem-ii−30313621059
trnK-UUUgenetranslation-rna−159441812587
matKgeneother−190434791575
rps16generibosomal-protein−511562621147
trnQ-UUGgenetranslation-rna−7232730472
psbKgenephotosystem-ii+76397825186
psbIgenephotosystem-ii+82028313111
trnS-GGAgenetranslation-rna−8434852288
trnG-UCCgenetranslation-rna+91989955757
trnR-UCUgenetranslation-rna+101211019675
atpAgeneatp-synthase−10292118161524
atpFgeneatp-synthase−11902131371235
atpHgeneatp-synthase−1349513741246
atpIgeneatp-synthase−1472515469744
rps2generibosomal-protein−1569916410711
rpoC2generna-polymerase−16632208294197
rpoC1generna-polymerase−20983238112828
rpoBgenerna-polymerase−23837270503213
trnC-GCAgenetranslation-rna+281462822276
petNgenecytochrome+290582914890
psbMgenephotosystem-ii−2991030015105
trnD-GUCgenetranslation-rna−305553062974
trnY-GUAgenetranslation-rna−307343081884
trnE-UUCgenetranslation-rna−308773095073
trnT-CGUgenetranslation-rna−315193159172
psbDgenephotosystem-ii+32700337621062
psbCgenephotosystem-ii+33709351311422
trnS-UGAgenetranslation-rna−353653545893
psbZgenephotosystem-ii+3579035979189
trnG-GCCgenetranslation-rna+362033627471
trnfM-CAUgenetranslation-rna−364223649674
rps14generibosomal-protein−3664836951303
psaBgenephotosystem-i−37078392832205
psaAgenephotosystem-i−39308415612253
ycf3geneother−42279442081929
trnS-GGAgenetranslation-rna+445194460687
rps4generibosomal-protein−4488845494606
trnT-UGUgenetranslation-rna−458914596473
trnL-UAAgenetranslation-rna+4664947223574
trnF-GAAgenetranslation-rna+475204759373
ndhJgenenad-dehydrogenase−4825348730477
ndhKgenenad-dehydrogenase−4883049508678
ndhCgenenad-dehydrogenase−4956149924363
trnV-UACgenetranslation-rna−5078551455670
trnM-CAUgenetranslation-rna+516435171673
atpEgeneatp-synthase−5194052342402
atpBgeneatp-synthase−52338538351497
rbcLgeneother+54622560891467
accDgeneother+56779582371458
psaIgenephotosystem-i+5897559086111
ycf4geneother+5954060095555
cemAgeneother+6064961339690
petAgenecytochrome+6154462507963
psbJgenephotosystem-ii−6349963622123
psbLgenephotosystem-ii−6375963876117
psbFgenephotosystem-ii−6389964019120
psbEgenephotosystem-ii−6403364285252
petLgenecytochrome+652216531796
petGgenecytochrome+6549165605114
trnW-CCAgenetranslation-rna−657346580874
trnP-UGGgenetranslation-rna−659716604574
psaJgenephotosystem-i+6631766452135
rpl33generibosomal-protein+6692667127201
rps18generibosomal-protein+6727767583306
rpl20generibosomal-protein−6774068115375
rps12generibosomal-protein−688579692328066
rps12generibosomal-protein+6885713852269665
clpPgeneother−69101709641863
psbBgenephotosystem-ii+71394729211527
psbTgenephotosystem-ii+7311073218108
psbNgenephotosystem-ii−7327873410132
psbHgenephotosystem-ii+7351373735222
petBgenecytochrome+73859752511392
petDgenecytochrome+75445766531208
rpoAgenerna-polymerase−76815778291014
rps11generibosomal-protein−7790078317417
rpl36generibosomal-protein−7843378547114
infAgeneother−7864278876234
rps8generibosomal-protein−7899379407414
rpl14generibosomal-protein−7958079949369
rpl16generibosomal-protein−80075813761301
rps3generibosomal-protein−8152282185663
rpl22generibosomal-protein−8216982634465
rps19generibosomal-protein−8269282971279
rpl2generibosomal-protein−83029845141485
rpl23generibosomal-protein−8453284814282
trnI-CAUgenetranslation-rna−849228499674
ycf2geneother+85084919546870
ycf15geneother+9199692245249
trnL-CAAgenetranslation-rna−925059258681
ndhBgenenad-dehydrogenase−93120953322212
rps7generibosomal-protein−9560696074468
trnV-GACgenetranslation-rna+985349860672
rrn16generibosomal-rna+988331003241491
trnI-GAUgenetranslation-rna+1006131016221009
trnA-UGCgenetranslation-rna+101686102565879
rrn23generibosomal-rna+1027561055672811
rrn4.5generibosomal-rna+105665105768103
rrn5generibosomal-rna+106023106144121
trnR-ACGgenetranslation-rna+10637310645279
trnN-GUUgenetranslation-rna−10702410709672
ndhFgenenad-dehydrogenase−1084851107082223
rpl32generibosomal-protein+111213111390177
trnL-UAGgenetranslation-rna+11211711219780
ccsAgeneother+112287113259972
ndhDgenenad-dehydrogenase−1134381149651527
psaCgenephotosystem-i−115061115307246
ndhEgenenad-dehydrogenase−115563115869306
ndhGgenenad-dehydrogenase−116084116615531
ndhIgenenad-dehydrogenase−116988117495507
ndhAgenenad-dehydrogenase−1175801197372157
ndhHgenenad-dehydrogenase−1197381209201182
rps15generibosomal-protein−121020121293273
ycf1geneother−1216781272285550
trnN-GUUgenetranslation-rna+12755312762572
trnR-ACGgenetranslation-rna−12819712827679
rrn5generibosomal-rna−128505128626121
rrn4.5generibosomal-rna−128881128984103
rrn23generibosomal-rna−1290821318932811
trnA-UGCgenetranslation-rna−132084132963879
trnI-GAUgenetranslation-rna−1330271340361009
rrn16generibosomal-rna−1343251358161491
trnV-GACgenetranslation-rna−13604313611572
rps7generibosomal-protein+138575139043468
ndhBgenenad-dehydrogenase+1393171415292212
trnL-CAAgenetranslation-rna+14206314214481
ycf15geneother−142404142653249
ycf2geneother−1426951495656870
trnI-CAUgenetranslation-rna+14965314972774
rpl23generibosomal-protein+149835150117282
rpl2generibosomal-protein+1501351516201485

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources