Monarda didyma chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PX394257.1 · 11–84 bp · −
psbA · PX394257.1 · 375–1,433 bp · −
trnK-UUU · PX394257.1 · 1,655–4,252 bp · −
matK · PX394257.1 · 1,979–3,508 bp · −
rps16 · PX394257.1 · 4,777–5,913 bp · −
trnQ-UUG · PX394257.1 · 6,856–6,927 bp · −
trnS-GCU · PX394257.1 · 8,170–8,257 bp · −
atpA · PX394257.1 · 10,103–11,626 bp · −
atpF · PX394257.1 · 11,727–12,984 bp · −
atpH · PX394257.1 · 13,257–13,502 bp · −
atpI · PX394257.1 · 14,526–15,269 bp · −
rps2 · PX394257.1 · 15,489–16,199 bp · −
rpoC2 · PX394257.1 · 16,428–20,627 bp · −
rpoC1 · PX394257.1 · 20,788–23,599 bp · −
rpoB · PX394257.1 · 23,626–26,838 bp · −
psbM · PX394257.1 · 29,266–29,370 bp · −
trnD-GUC · PX394257.1 · 29,889–29,962 bp · −
trnY-GUA · PX394257.1 · 30,080–30,163 bp · −
trnE-UUC · PX394257.1 · 30,239–30,311 bp · −
trnS-UGA · PX394257.1 · 34,973–35,065 bp · −
trnM-CAU · PX394257.1 · 36,099–36,172 bp · −
rps14 · PX394257.1 · 36,322–36,624 bp · −
psaB · PX394257.1 · 36,747–38,951 bp · −
psaA · PX394257.1 · 38,977–41,229 bp · −
ycf3 · PX394257.1 · 42,018–43,954 bp · −
rps4 · PX394257.1 · 45,008–45,613 bp · −
trnT-UGU · PX394257.1 · 45,998–46,070 bp · −
ndhJ · PX394257.1 · 48,325–48,801 bp · −
ndhK · PX394257.1 · 48,912–49,589 bp · −
ndhC · PX394257.1 · 49,641–50,003 bp · −
trnV-UAC · PX394257.1 · 50,956–51,601 bp · −
atpE · PX394257.1 · 52,050–52,451 bp · −
atpB · PX394257.1 · 52,448–53,938 bp · −
psbJ · PX394257.1 · 63,493–63,615 bp · −
psbL · PX394257.1 · 63,750–63,866 bp · −
psbF · PX394257.1 · 63,890–64,009 bp · −
psbE · PX394257.1 · 64,024–64,275 bp · −
trnW-CCA · PX394257.1 · 65,646–65,719 bp · −
trnP-UGG · PX394257.1 · 65,893–65,966 bp · −
rpl20 · PX394257.1 · 67,691–68,077 bp · −
rps12 · PX394257.1 · 68,893–69,006 bp · −
rps12 · PX394257.1 · 96,251–97,044 bp · −
clpP · PX394257.1 · 69,130–71,063 bp · −
psbN · PX394257.1 · 73,402–73,533 bp · −
rpoA · PX394257.1 · 76,912–77,919 bp · −
rps11 · PX394257.1 · 77,996–78,412 bp · −
rpl36 · PX394257.1 · 78,523–78,636 bp · −
infA · PX394257.1 · 78,732–78,965 bp · −
rps8 · PX394257.1 · 79,089–79,493 bp · −
rpl14 · PX394257.1 · 79,676–80,044 bp · −
rpl16 · PX394257.1 · 80,176–81,451 bp · −
rps3 · PX394257.1 · 81,596–82,258 bp · −
rpl22 · PX394257.1 · 82,243–82,710 bp · −
rps19 · PX394257.1 · 82,790–83,068 bp · −
rpl2 · PX394257.1 · 83,128–84,617 bp · −
rpl23 · PX394257.1 · 84,636–84,917 bp · −
trnI-CAU · PX394257.1 · 85,083–85,156 bp · −
trnL-CAA · PX394257.1 · 92,616–92,696 bp · −
ndhB · PX394257.1 · 93,257–95,464 bp · −
rps7 · PX394257.1 · 95,730–96,197 bp · −
trnN-GUU · PX394257.1 · 107,135–107,206 bp · −
ndhF · PX394257.1 · 108,560–110,791 bp · −
ndhD · PX394257.1 · 113,555–115,084 bp · −
psaC · PX394257.1 · 115,177–115,422 bp · −
ndhE · PX394257.1 · 115,675–115,980 bp · −
ndhG · PX394257.1 · 116,204–116,734 bp · −
ndhI · PX394257.1 · 117,109–117,615 bp · −
ndhA · PX394257.1 · 117,691–119,794 bp · −
ndhH · PX394257.1 · 119,796–120,977 bp · −
rps15 · PX394257.1 · 121,077–121,349 bp · −
ycf1 · PX394257.1 · 121,768–127,302 bp · −
trnR-ACG · PX394257.1 · 128,228–128,301 bp · −
rrn5S · PX394257.1 · 128,545–128,665 bp · −
rrn4.5S · PX394257.1 · 128,926–129,028 bp · −
rrn23S · PX394257.1 · 129,127–131,937 bp · −
trnA-UGC · PX394257.1 · 132,108–132,985 bp · −
trnI-GAU · PX394257.1 · 133,056–134,075 bp · −
rrn16S · PX394257.1 · 134,374–135,864 bp · −
trnV-GAC · PX394257.1 · 136,091–136,162 bp · −
ycf15 · PX394257.1 · 142,478–142,675 bp · −
ycf2 · PX394257.1 · 142,817–149,593 bp · −
psbK · PX394257.1 · 7,308–7,493 bp · +
psbI · PX394257.1 · 7,905–8,015 bp · +
trnG-UCC · PX394257.1 · 8,980–9,736 bp · +
trnR-UCU · PX394257.1 · 9,923–9,994 bp · +
trnC-GCA · PX394257.1 · 27,988–28,058 bp · +
petN · PX394257.1 · 28,219–28,308 bp · +
trnT-GGU · PX394257.1 · 30,868–30,939 bp · +
psbD · PX394257.1 · 32,290–33,351 bp · +
psbC · PX394257.1 · 33,299–34,720 bp · +
psbZ · PX394257.1 · 35,405–35,593 bp · +
trnG-GCC · PX394257.1 · 35,865–35,935 bp · +
trnS-GGA · PX394257.1 · 44,640–44,726 bp · +
trnL-UAA · PX394257.1 · 46,743–47,335 bp · +
trnF-GAA · PX394257.1 · 47,618–47,690 bp · +
trnM-CAU · PX394257.1 · 51,782–51,854 bp · +
rbcL · PX394257.1 · 54,730–56,163 bp · +
accD · PX394257.1 · 56,860–58,341 bp · +
psaI · PX394257.1 · 58,823–58,933 bp · +
ycf4 · PX394257.1 · 59,379–59,933 bp · +
cemA · PX394257.1 · 60,586–61,275 bp · +
petA · PX394257.1 · 61,506–62,468 bp · +
petL · PX394257.1 · 65,152–65,247 bp · +
petG · PX394257.1 · 65,418–65,531 bp · +
psaJ · PX394257.1 · 66,240–66,374 bp · +
rpl33 · PX394257.1 · 66,828–67,031 bp · +
rps18 · PX394257.1 · 67,201–67,506 bp · +
rps12 · PX394257.1 · 137,794–138,587 bp · +
psbB · PX394257.1 · 71,515–73,041 bp · +
psbT · PX394257.1 · 73,232–73,333 bp · +
psbH · PX394257.1 · 73,639–73,860 bp · +
petB · PX394257.1 · 73,982–75,354 bp · +
petD · PX394257.1 · 75,542–76,720 bp · +
ycf2 · PX394257.1 · 85,245–92,021 bp · +
ycf15 · PX394257.1 · 92,163–92,360 bp · +
trnV-GAC · PX394257.1 · 98,676–98,747 bp · +
rrn16S · PX394257.1 · 98,974–100,464 bp · +
trnI-GAU · PX394257.1 · 100,763–101,782 bp · +
trnA-UGC · PX394257.1 · 101,853–102,730 bp · +
rrn23S · PX394257.1 · 102,901–105,711 bp · +
rrn4.5S · PX394257.1 · 105,810–105,912 bp · +
rrn5S · PX394257.1 · 106,173–106,293 bp · +
trnR-ACG · PX394257.1 · 106,537–106,610 bp · +
rpl32 · PX394257.1 · 111,265–111,435 bp · +
trnL-UAG · PX394257.1 · 112,160–112,239 bp · +
ccsA · PX394257.1 · 112,340–113,317 bp · +
trnN-GUU · PX394257.1 · 127,632–127,703 bp · +
rps7 · PX394257.1 · 138,641–139,108 bp · +
ndhB · PX394257.1 · 139,374–141,581 bp · +
trnL-CAA · PX394257.1 · 142,142–142,222 bp · +
trnI-CAU · PX394257.1 · 149,682–149,755 bp · +
rpl23 · PX394257.1 · 149,921–150,202 bp · +
rpl2 · PX394257.1 · 150,221–151,710 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Monarda didyma
ANNOTATED PLASTOME
PX394257.1
151,812 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37953 75906 113859 151812 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1655 4252 2598 Locate
matK gene − 1979 3508 1530 Locate
rps16 gene − 4777 5913 1137 Locate
trnQ-UUG gene − 6856 6927 72 Locate
psbK gene + 7308 7493 186 Locate
psbI gene + 7905 8015 111 Locate
trnS-GCU gene − 8170 8257 88 Locate
trnG-UCC gene + 8980 9736 757 Locate
trnR-UCU gene + 9923 9994 72 Locate
atpA gene − 10103 11626 1524 Locate
atpF gene − 11727 12984 1258 Locate
atpH gene − 13257 13502 246 Locate
atpI gene − 14526 15269 744 Locate
rps2 gene − 15489 16199 711 Locate
rpoC2 gene − 16428 20627 4200 Locate
rpoC1 gene − 20788 23599 2812 Locate
rpoB gene − 23626 26838 3213 Locate
trnC-GCA gene + 27988 28058 71 Locate
petN gene + 28219 28308 90 Locate
psbM gene − 29266 29370 105 Locate
trnD-GUC gene − 29889 29962 74 Locate
trnY-GUA gene − 30080 30163 84 Locate
trnE-UUC gene − 30239 30311 73 Locate
trnT-GGU gene + 30868 30939 72 Locate
psbD gene + 32290 33351 1062 Locate
psbC gene + 33299 34720 1422 Locate
trnS-UGA gene − 34973 35065 93 Locate
psbZ gene + 35405 35593 189 Locate
trnG-GCC gene + 35865 35935 71 Locate
trnM-CAU gene − 36099 36172 74 Locate
rps14 gene − 36322 36624 303 Locate
psaB gene − 36747 38951 2205 Locate
psaA gene − 38977 41229 2253 Locate
ycf3 gene − 42018 43954 1937 Locate
trnS-GGA gene + 44640 44726 87 Locate
rps4 gene − 45008 45613 606 Locate
trnT-UGU gene − 45998 46070 73 Locate
trnL-UAA gene + 46743 47335 593 Locate
trnF-GAA gene + 47618 47690 73 Locate
ndhJ gene − 48325 48801 477 Locate
ndhK gene − 48912 49589 678 Locate
ndhC gene − 49641 50003 363 Locate
trnV-UAC gene − 50956 51601 646 Locate
trnM-CAU gene + 51782 51854 73 Locate
atpE gene − 52050 52451 402 Locate
atpB gene − 52448 53938 1491 Locate
rbcL gene + 54730 56163 1434 Locate
accD gene + 56860 58341 1482 Locate
psaI gene + 58823 58933 111 Locate
ycf4 gene + 59379 59933 555 Locate
cemA gene + 60586 61275 690 Locate
petA gene + 61506 62468 963 Locate
psbJ gene − 63493 63615 123 Locate
psbL gene − 63750 63866 117 Locate
psbF gene − 63890 64009 120 Locate
psbE gene − 64024 64275 252 Locate
petL gene + 65152 65247 96 Locate
petG gene + 65418 65531 114 Locate
trnW-CCA gene − 65646 65719 74 Locate
trnP-UGG gene − 65893 65966 74 Locate
psaJ gene + 66240 66374 135 Locate
rpl33 gene + 66828 67031 204 Locate
rps18 gene + 67201 67506 306 Locate
rpl20 gene − 67691 68077 387 Locate
rps12 gene − 68893 69006 114 Locate
clpP gene − 69130 71063 1934 Locate
psbB gene + 71515 73041 1527 Locate
psbT gene + 73232 73333 102 Locate
psbN gene − 73402 73533 132 Locate
psbH gene + 73639 73860 222 Locate
petB gene + 73982 75354 1373 Locate
petD gene + 75542 76720 1179 Locate
rpoA gene − 76912 77919 1008 Locate
rps11 gene − 77996 78412 417 Locate
rpl36 gene − 78523 78636 114 Locate
infA gene − 78732 78965 234 Locate
rps8 gene − 79089 79493 405 Locate
rpl14 gene − 79676 80044 369 Locate
rpl16 gene − 80176 81451 1276 Locate
rps3 gene − 81596 82258 663 Locate
rpl22 gene − 82243 82710 468 Locate
rps19 gene − 82790 83068 279 Locate
rpl2 gene − 83128 84617 1490 Locate
rpl23 gene − 84636 84917 282 Locate
trnI-CAU gene − 85083 85156 74 Locate
ycf2 gene + 85245 92021 6777 Locate
ycf15 gene + 92163 92360 198 Locate
trnL-CAA gene − 92616 92696 81 Locate
ndhB gene − 93257 95464 2208 Locate
rps7 gene − 95730 96197 468 Locate
rps12 gene − 96251 97044 794 Locate
trnV-GAC gene + 98676 98747 72 Locate
rrn16S gene + 98974 100464 1491 Locate
trnI-GAU gene + 100763 101782 1020 Locate
trnA-UGC gene + 101853 102730 878 Locate
rrn23S gene + 102901 105711 2811 Locate
rrn4.5S gene + 105810 105912 103 Locate
rrn5S gene + 106173 106293 121 Locate
trnR-ACG gene + 106537 106610 74 Locate
trnN-GUU gene − 107135 107206 72 Locate
ndhF gene − 108560 110791 2232 Locate
rpl32 gene + 111265 111435 171 Locate
trnL-UAG gene + 112160 112239 80 Locate
ccsA gene + 112340 113317 978 Locate
ndhD gene − 113555 115084 1530 Locate
psaC gene − 115177 115422 246 Locate
ndhE gene − 115675 115980 306 Locate
ndhG gene − 116204 116734 531 Locate
ndhI gene − 117109 117615 507 Locate
ndhA gene − 117691 119794 2104 Locate
ndhH gene − 119796 120977 1182 Locate
rps15 gene − 121077 121349 273 Locate
ycf1 gene − 121768 127302 5535 Locate
trnN-GUU gene + 127632 127703 72 Locate
trnR-ACG gene − 128228 128301 74 Locate
rrn5S gene − 128545 128665 121 Locate
rrn4.5S gene − 128926 129028 103 Locate
rrn23S gene − 129127 131937 2811 Locate
trnA-UGC gene − 132108 132985 878 Locate
trnI-GAU gene − 133056 134075 1020 Locate
rrn16S gene − 134374 135864 1491 Locate
trnV-GAC gene − 136091 136162 72 Locate
rps12 gene + 137794 138587 794 Locate
rps7 gene + 138641 139108 468 Locate
ndhB gene + 139374 141581 2208 Locate
trnL-CAA gene + 142142 142222 81 Locate
ycf15 gene − 142478 142675 198 Locate
ycf2 gene − 142817 149593 6777 Locate
trnI-CAU gene + 149682 149755 74 Locate
rpl23 gene + 149921 150202 282 Locate
rpl2 gene + 150221 151710 1490 Locate
Status Available
Accession PX394257.1
Length 151,812 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources