Ocimum x africanum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_082140.1 · 14–88 bp · −
psbA · NC_082140.1 · 385–1,443 bp · −
trnK-UUU · NC_082140.1 · 1,675–4,251 bp · −
matK · NC_082140.1 · 2,000–3,520 bp · −
rps16 · NC_082140.1 · 4,804–5,930 bp · −
trnQ-UUG · NC_082140.1 · 6,844–6,915 bp · −
trnS-GCU · NC_082140.1 · 8,138–8,225 bp · −
atpA · NC_082140.1 · 10,027–11,550 bp · −
atpF · NC_082140.1 · 11,658–12,897 bp · −
atpH · NC_082140.1 · 13,186–13,431 bp · −
atpI · NC_082140.1 · 14,442–15,185 bp · −
rps2 · NC_082140.1 · 15,411–16,121 bp · −
rpoC2 · NC_082140.1 · 16,339–20,496 bp · −
rpoC1 · NC_082140.1 · 20,673–23,502 bp · −
rpoB · NC_082140.1 · 23,529–26,741 bp · −
psbM · NC_082140.1 · 29,280–29,384 bp · −
trnD-GUC · NC_082140.1 · 29,903–29,976 bp · −
trnY-GUA · NC_082140.1 · 30,093–30,176 bp · −
trnE-UUC · NC_082140.1 · 30,247–30,319 bp · −
trnS-UGA · NC_082140.1 · 34,938–35,030 bp · −
trnfM-CAU · NC_082140.1 · 36,028–36,101 bp · −
rps14 · NC_082140.1 · 36,246–36,548 bp · −
psaB · NC_082140.1 · 36,671–38,875 bp · −
psaA · NC_082140.1 · 38,901–41,153 bp · −
pafI · NC_082140.1 · 41,952–43,920 bp · −
rps4 · NC_082140.1 · 45,141–45,746 bp · −
trnT-UGU · NC_082140.1 · 46,135–46,207 bp · −
ndhJ · NC_082140.1 · 48,496–48,972 bp · −
ndhK · NC_082140.1 · 49,083–49,760 bp · −
ndhC · NC_082140.1 · 49,812–50,174 bp · −
trnV-UAC · NC_082140.1 · 51,100–51,751 bp · −
atpE · NC_082140.1 · 52,195–52,596 bp · −
atpB · NC_082140.1 · 52,593–54,089 bp · −
psbJ · NC_082140.1 · 63,880–64,002 bp · −
psbL · NC_082140.1 · 64,137–64,253 bp · −
psbF · NC_082140.1 · 64,277–64,396 bp · −
psbE · NC_082140.1 · 64,411–64,662 bp · −
trnW-CCA · NC_082140.1 · 66,044–66,117 bp · −
trnP-UGG · NC_082140.1 · 66,286–66,359 bp · −
rpl20 · NC_082140.1 · 68,114–68,500 bp · −
rps12 · NC_082140.1 · 69,236–69,349 bp · −
rps12 · NC_082140.1 · 96,636–97,429 bp · −
clpP1 · NC_082140.1 · 69,490–71,405 bp · −
pbf1 · NC_082140.1 · 73,744–73,875 bp · −
rpoA · NC_082140.1 · 77,270–78,277 bp · −
rps11 · NC_082140.1 · 78,347–78,763 bp · −
rpl36 · NC_082140.1 · 78,873–78,986 bp · −
infA · NC_082140.1 · 79,082–79,315 bp · −
rps8 · NC_082140.1 · 79,444–79,848 bp · −
rpl14 · NC_082140.1 · 80,019–80,387 bp · −
rpl16 · NC_082140.1 · 80,519–81,784 bp · −
rps3 · NC_082140.1 · 81,928–82,590 bp · −
rpl22 · NC_082140.1 · 82,575–83,048 bp · −
rps19 · NC_082140.1 · 83,130–83,408 bp · −
rpl2 · NC_082140.1 · 83,475–84,953 bp · −
rpl23 · NC_082140.1 · 84,972–85,253 bp · −
trnI-CAU · NC_082140.1 · 85,419–85,492 bp · −
trnL-CAA · NC_082140.1 · 93,002–93,082 bp · −
ndhB · NC_082140.1 · 93,654–95,861 bp · −
rps7 · NC_082140.1 · 96,115–96,582 bp · −
trnN-GUU · NC_082140.1 · 107,574–107,645 bp · −
ndhF · NC_082140.1 · 109,011–111,242 bp · −
ndhD · NC_082140.1 · 113,982–115,484 bp · −
psaC · NC_082140.1 · 115,602–115,847 bp · −
ndhE · NC_082140.1 · 116,108–116,413 bp · −
ndhG · NC_082140.1 · 116,622–117,152 bp · −
ndhI · NC_082140.1 · 117,515–118,021 bp · −
ndhA · NC_082140.1 · 118,102–120,199 bp · −
ndhH · NC_082140.1 · 120,201–121,382 bp · −
rps15 · NC_082140.1 · 121,497–121,769 bp · −
ycf1 · NC_082140.1 · 122,212–127,746 bp · −
trnR-ACG · NC_082140.1 · 128,732–128,805 bp · −
rrn5 · NC_082140.1 · 129,049–129,169 bp · −
rrn4.5 · NC_082140.1 · 129,425–129,527 bp · −
rrn23 · NC_082140.1 · 129,626–132,436 bp · −
trnA-UGC · NC_082140.1 · 132,601–133,479 bp · −
trnI-GAU · NC_082140.1 · 133,544–134,561 bp · −
rrn16 · NC_082140.1 · 134,859–136,349 bp · −
trnV-GAC · NC_082140.1 · 136,570–136,641 bp · −
ycf2 · NC_082140.1 · 143,325–150,146 bp · −
psbK · NC_082140.1 · 7,296–7,475 bp · +
psbI · NC_082140.1 · 7,866–7,976 bp · +
trnG-UCC · NC_082140.1 · 8,906–9,665 bp · +
trnR-UCU · NC_082140.1 · 9,852–9,923 bp · +
trnC-GCA · NC_082140.1 · 27,970–28,040 bp · +
petN · NC_082140.1 · 28,203–28,292 bp · +
trnT-GGU · NC_082140.1 · 30,940–31,011 bp · +
psbD · NC_082140.1 · 32,272–33,333 bp · +
psbC · NC_082140.1 · 33,317–34,702 bp · +
psbZ · NC_082140.1 · 35,364–35,552 bp · +
trnG-GCC · NC_082140.1 · 35,797–35,867 bp · +
trnS-GGA · NC_082140.1 · 44,760–44,846 bp · +
trnL-UAA · NC_082140.1 · 46,907–47,466 bp · +
trnF-GAA · NC_082140.1 · 47,749–47,821 bp · +
trnM-CAU · NC_082140.1 · 51,932–52,004 bp · +
rbcL · NC_082140.1 · 54,874–56,307 bp · +
accD · NC_082140.1 · 57,000–58,481 bp · +
psaI · NC_082140.1 · 59,213–59,323 bp · +
pafII · NC_082140.1 · 59,773–60,327 bp · +
cemA · NC_082140.1 · 60,974–61,663 bp · +
petA · NC_082140.1 · 61,871–62,833 bp · +
petL · NC_082140.1 · 65,544–65,639 bp · +
petG · NC_082140.1 · 65,808–65,921 bp · +
psaJ · NC_082140.1 · 66,641–66,775 bp · +
rpl33 · NC_082140.1 · 67,219–67,419 bp · +
rps18 · NC_082140.1 · 67,580–67,885 bp · +
rps12 · NC_082140.1 · 138,304–139,097 bp · +
psbB · NC_082140.1 · 71,862–73,388 bp · +
psbT · NC_082140.1 · 73,577–73,678 bp · +
psbH · NC_082140.1 · 73,981–74,199 bp · +
petB · NC_082140.1 · 74,334–75,703 bp · +
petD · NC_082140.1 · 75,892–77,098 bp · +
ycf2 · NC_082140.1 · 85,587–92,408 bp · +
trnV-GAC · NC_082140.1 · 99,092–99,163 bp · +
rrn16 · NC_082140.1 · 99,384–100,874 bp · +
trnI-GAU · NC_082140.1 · 101,172–102,189 bp · +
trnA-UGC · NC_082140.1 · 102,254–103,132 bp · +
rrn23 · NC_082140.1 · 103,297–106,107 bp · +
rrn4.5 · NC_082140.1 · 106,206–106,308 bp · +
rrn5 · NC_082140.1 · 106,564–106,684 bp · +
trnR-ACG · NC_082140.1 · 106,928–107,001 bp · +
ycf1 · NC_082140.1 · 107,987–109,117 bp · +
rpl32 · NC_082140.1 · 111,720–111,890 bp · +
trnL-UAG · NC_082140.1 · 112,617–112,696 bp · +
ccsA · NC_082140.1 · 112,786–113,757 bp · +
trnN-GUU · NC_082140.1 · 128,088–128,159 bp · +
rps7 · NC_082140.1 · 139,151–139,618 bp · +
ndhB · NC_082140.1 · 139,872–142,079 bp · +
trnL-CAA · NC_082140.1 · 142,651–142,731 bp · +
trnI-CAU · NC_082140.1 · 150,241–150,314 bp · +
rpl23 · NC_082140.1 · 150,480–150,761 bp · +
rpl2 · NC_082140.1 · 150,780–152,258 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ocimum x africanum
ANNOTATED PLASTOME
NC_082140.1
152,365 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38091 76182 114274 152365 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 14 88 75 Locate
psbA gene − 385 1443 1059 Locate
trnK-UUU gene − 1675 4251 2577 Locate
matK gene − 2000 3520 1521 Locate
rps16 gene − 4804 5930 1127 Locate
trnQ-UUG gene − 6844 6915 72 Locate
psbK gene + 7296 7475 180 Locate
psbI gene + 7866 7976 111 Locate
trnS-GCU gene − 8138 8225 88 Locate
trnG-UCC gene + 8906 9665 760 Locate
trnR-UCU gene + 9852 9923 72 Locate
atpA gene − 10027 11550 1524 Locate
atpF gene − 11658 12897 1240 Locate
atpH gene − 13186 13431 246 Locate
atpI gene − 14442 15185 744 Locate
rps2 gene − 15411 16121 711 Locate
rpoC2 gene − 16339 20496 4158 Locate
rpoC1 gene − 20673 23502 2830 Locate
rpoB gene − 23529 26741 3213 Locate
trnC-GCA gene + 27970 28040 71 Locate
petN gene + 28203 28292 90 Locate
psbM gene − 29280 29384 105 Locate
trnD-GUC gene − 29903 29976 74 Locate
trnY-GUA gene − 30093 30176 84 Locate
trnE-UUC gene − 30247 30319 73 Locate
trnT-GGU gene + 30940 31011 72 Locate
psbD gene + 32272 33333 1062 Locate
psbC gene + 33317 34702 1386 Locate
trnS-UGA gene − 34938 35030 93 Locate
psbZ gene + 35364 35552 189 Locate
trnG-GCC gene + 35797 35867 71 Locate
trnfM-CAU gene − 36028 36101 74 Locate
rps14 gene − 36246 36548 303 Locate
psaB gene − 36671 38875 2205 Locate
psaA gene − 38901 41153 2253 Locate
pafI gene − 41952 43920 1969 Locate
trnS-GGA gene + 44760 44846 87 Locate
rps4 gene − 45141 45746 606 Locate
trnT-UGU gene − 46135 46207 73 Locate
trnL-UAA gene + 46907 47466 560 Locate
trnF-GAA gene + 47749 47821 73 Locate
ndhJ gene − 48496 48972 477 Locate
ndhK gene − 49083 49760 678 Locate
ndhC gene − 49812 50174 363 Locate
trnV-UAC gene − 51100 51751 652 Locate
trnM-CAU gene + 51932 52004 73 Locate
atpE gene − 52195 52596 402 Locate
atpB gene − 52593 54089 1497 Locate
rbcL gene + 54874 56307 1434 Locate
accD gene + 57000 58481 1482 Locate
psaI gene + 59213 59323 111 Locate
pafII gene + 59773 60327 555 Locate
cemA gene + 60974 61663 690 Locate
petA gene + 61871 62833 963 Locate
psbJ gene − 63880 64002 123 Locate
psbL gene − 64137 64253 117 Locate
psbF gene − 64277 64396 120 Locate
psbE gene − 64411 64662 252 Locate
petL gene + 65544 65639 96 Locate
petG gene + 65808 65921 114 Locate
trnW-CCA gene − 66044 66117 74 Locate
trnP-UGG gene − 66286 66359 74 Locate
psaJ gene + 66641 66775 135 Locate
rpl33 gene + 67219 67419 201 Locate
rps18 gene + 67580 67885 306 Locate
rpl20 gene − 68114 68500 387 Locate
rps12 gene − 69236 69349 114 Locate
clpP1 gene − 69490 71405 1916 Locate
psbB gene + 71862 73388 1527 Locate
psbT gene + 73577 73678 102 Locate
pbf1 gene − 73744 73875 132 Locate
psbH gene + 73981 74199 219 Locate
petB gene + 74334 75703 1370 Locate
petD gene + 75892 77098 1207 Locate
rpoA gene − 77270 78277 1008 Locate
rps11 gene − 78347 78763 417 Locate
rpl36 gene − 78873 78986 114 Locate
infA gene − 79082 79315 234 Locate
rps8 gene − 79444 79848 405 Locate
rpl14 gene − 80019 80387 369 Locate
rpl16 gene − 80519 81784 1266 Locate
rps3 gene − 81928 82590 663 Locate
rpl22 gene − 82575 83048 474 Locate
rps19 gene − 83130 83408 279 Locate
rpl2 gene − 83475 84953 1479 Locate
rpl23 gene − 84972 85253 282 Locate
trnI-CAU gene − 85419 85492 74 Locate
ycf2 gene + 85587 92408 6822 Locate
trnL-CAA gene − 93002 93082 81 Locate
ndhB gene − 93654 95861 2208 Locate
rps7 gene − 96115 96582 468 Locate
rps12 gene − 96636 97429 794 Locate
trnV-GAC gene + 99092 99163 72 Locate
rrn16 gene + 99384 100874 1491 Locate
trnI-GAU gene + 101172 102189 1018 Locate
trnA-UGC gene + 102254 103132 879 Locate
rrn23 gene + 103297 106107 2811 Locate
rrn4.5 gene + 106206 106308 103 Locate
rrn5 gene + 106564 106684 121 Locate
trnR-ACG gene + 106928 107001 74 Locate
trnN-GUU gene − 107574 107645 72 Locate
ycf1 gene + 107987 109117 1131 Locate
ndhF gene − 109011 111242 2232 Locate
rpl32 gene + 111720 111890 171 Locate
trnL-UAG gene + 112617 112696 80 Locate
ccsA gene + 112786 113757 972 Locate
ndhD gene − 113982 115484 1503 Locate
psaC gene − 115602 115847 246 Locate
ndhE gene − 116108 116413 306 Locate
ndhG gene − 116622 117152 531 Locate
ndhI gene − 117515 118021 507 Locate
ndhA gene − 118102 120199 2098 Locate
ndhH gene − 120201 121382 1182 Locate
rps15 gene − 121497 121769 273 Locate
ycf1 gene − 122212 127746 5535 Locate
trnN-GUU gene + 128088 128159 72 Locate
trnR-ACG gene − 128732 128805 74 Locate
rrn5 gene − 129049 129169 121 Locate
rrn4.5 gene − 129425 129527 103 Locate
rrn23 gene − 129626 132436 2811 Locate
trnA-UGC gene − 132601 133479 879 Locate
trnI-GAU gene − 133544 134561 1018 Locate
rrn16 gene − 134859 136349 1491 Locate
trnV-GAC gene − 136570 136641 72 Locate
rps12 gene + 138304 139097 794 Locate
rps7 gene + 139151 139618 468 Locate
ndhB gene + 139872 142079 2208 Locate
trnL-CAA gene + 142651 142731 81 Locate
ycf2 gene − 143325 150146 6822 Locate
trnI-CAU gene + 150241 150314 74 Locate
rpl23 gene + 150480 150761 282 Locate
rpl2 gene + 150780 152258 1479 Locate
Status Available
Accession NC_082140.1
Length 152,365 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources