Origanum vulgare subsp. virens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON641292.1 · 11–85 bp · −
psbA · ON641292.1 · 427–1,485 bp · −
trnK-UUU · ON641292.1 · 1,706–4,257 bp · −
matK · ON641292.1 · 1,991–3,520 bp · −
rps16 · ON641292.1 · 4,807–5,951 bp · −
trnQ-UUG · ON641292.1 · 6,879–6,950 bp · −
trnS-GCU · ON641292.1 · 8,169–8,256 bp · −
atpA · ON641292.1 · 10,093–11,616 bp · −
atpF · ON641292.1 · 11,711–12,961 bp · −
atpH · ON641292.1 · 13,228–13,473 bp · −
atpI · ON641292.1 · 14,520–15,263 bp · −
rps2 · ON641292.1 · 15,489–16,199 bp · −
rpoC2 · ON641292.1 · 16,421–20,602 bp · −
rpoC1 · ON641292.1 · 20,775–23,593 bp · −
rpoB · ON641292.1 · 23,620–26,832 bp · −
psbM · ON641292.1 · 29,248–29,352 bp · −
trnD-GUC · ON641292.1 · 29,870–29,943 bp · −
trnY-GUA · ON641292.1 · 30,054–30,137 bp · −
trnE-UUC · ON641292.1 · 30,217–30,289 bp · −
trnS-UGA · ON641292.1 · 34,947–35,039 bp · −
trnfM-CAU · ON641292.1 · 36,072–36,145 bp · −
rps14 · ON641292.1 · 36,295–36,597 bp · −
psaB · ON641292.1 · 36,720–38,924 bp · −
psaA · ON641292.1 · 38,950–41,202 bp · −
pafI · ON641292.1 · 41,952–43,881 bp · −
rps4 · ON641292.1 · 45,106–45,711 bp · −
trnT-UGU · ON641292.1 · 46,102–46,174 bp · −
ndhJ · ON641292.1 · 48,403–48,879 bp · −
ndhK · ON641292.1 · 48,990–49,667 bp · −
ndhC · ON641292.1 · 49,719–50,081 bp · −
trnV-UAC · ON641292.1 · 51,051–51,695 bp · −
atpE · ON641292.1 · 52,144–52,545 bp · −
atpB · ON641292.1 · 52,542–54,032 bp · −
psbJ · ON641292.1 · 63,510–63,632 bp · −
psbL · ON641292.1 · 63,767–63,883 bp · −
psbF · ON641292.1 · 63,907–64,026 bp · −
psbE · ON641292.1 · 64,041–64,292 bp · −
trnW-CCA · ON641292.1 · 65,663–65,736 bp · −
trnP-UGG · ON641292.1 · 65,910–65,983 bp · −
rpl20 · ON641292.1 · 67,760–68,146 bp · −
rps12 · ON641292.1 · 68,956–69,069 bp · −
rps12 · ON641292.1 · 96,253–97,046 bp · −
clpP1 · ON641292.1 · 69,194–71,098 bp · −
pbf1 · ON641292.1 · 73,428–73,559 bp · −
rpoA · ON641292.1 · 76,927–77,934 bp · −
rps11 · ON641292.1 · 78,006–78,422 bp · −
rpl36 · ON641292.1 · 78,532–78,645 bp · −
infA · ON641292.1 · 78,741–78,974 bp · −
rps8 · ON641292.1 · 79,096–79,500 bp · −
rpl14 · ON641292.1 · 79,670–80,038 bp · −
rpl16 · ON641292.1 · 80,170–81,450 bp · −
rps3 · ON641292.1 · 81,595–82,257 bp · −
rpl22 · ON641292.1 · 82,242–82,709 bp · −
rps19 · ON641292.1 · 82,779–83,057 bp · −
rpl2 · ON641292.1 · 83,117–84,604 bp · −
rpl23 · ON641292.1 · 84,623–84,904 bp · −
trnI-CAU · ON641292.1 · 85,070–85,143 bp · −
trnL-CAA · ON641292.1 · 92,618–92,698 bp · −
ndhB · ON641292.1 · 93,259–95,466 bp · −
rps7 · ON641292.1 · 95,732–96,199 bp · −
trnN-GUU · ON641292.1 · 107,143–107,214 bp · −
ndhF · ON641292.1 · 108,568–110,805 bp · −
ndhD · ON641292.1 · 113,561–114,712 bp · −
psaC · ON641292.1 · 115,186–115,431 bp · −
ndhE · ON641292.1 · 115,666–115,971 bp · −
ndhG · ON641292.1 · 116,195–116,725 bp · −
ndhI · ON641292.1 · 117,099–117,605 bp · −
ndhA · ON641292.1 · 117,681–119,771 bp · −
ndhH · ON641292.1 · 119,773–120,954 bp · −
rps15 · ON641292.1 · 121,054–121,326 bp · −
ycf1 · ON641292.1 · 121,754–127,297 bp · −
trnR-ACG · ON641292.1 · 128,224–128,297 bp · −
rrn5 · ON641292.1 · 128,541–128,661 bp · −
rrn4.5 · ON641292.1 · 128,922–129,024 bp · −
rrn23 · ON641292.1 · 129,123–131,933 bp · −
trnA-UGC · ON641292.1 · 132,099–132,976 bp · −
trnI-GAU · ON641292.1 · 133,046–134,071 bp · −
rrn16 · ON641292.1 · 134,370–135,860 bp · −
trnV-GAC · ON641292.1 · 136,087–136,158 bp · −
ycf15 · ON641292.1 · 142,479–142,727 bp · −
ycf2 · ON641292.1 · 142,818–149,609 bp · −
psbK · ON641292.1 · 7,331–7,516 bp · +
psbI · ON641292.1 · 7,908–8,018 bp · +
trnG-UCC · ON641292.1 · 8,979–9,733 bp · +
trnR-UCU · ON641292.1 · 9,914–9,985 bp · +
trnC-GCA · ON641292.1 · 27,954–28,024 bp · +
petN · ON641292.1 · 28,185–28,274 bp · +
trnT-GGU · ON641292.1 · 30,852–30,923 bp · +
psbD · ON641292.1 · 32,270–33,331 bp · +
psbC · ON641292.1 · 33,315–34,700 bp · +
psbZ · ON641292.1 · 35,379–35,567 bp · +
trnG-GCC · ON641292.1 · 35,839–35,909 bp · +
trnS-GGA · ON641292.1 · 44,732–44,818 bp · +
trnL-UAA · ON641292.1 · 46,847–47,401 bp · +
trnF-GAA · ON641292.1 · 47,694–47,766 bp · +
trnM-CAU · ON641292.1 · 51,876–51,948 bp · +
rbcL · ON641292.1 · 54,831–56,264 bp · +
accD · ON641292.1 · 56,955–58,442 bp · +
psaI · ON641292.1 · 58,906–59,016 bp · +
pafII · ON641292.1 · 59,464–60,018 bp · +
cemA · ON641292.1 · 60,648–61,337 bp · +
petA · ON641292.1 · 61,551–62,513 bp · +
petL · ON641292.1 · 65,170–65,265 bp · +
petG · ON641292.1 · 65,435–65,548 bp · +
psaJ · ON641292.1 · 66,263–66,397 bp · +
rpl33 · ON641292.1 · 66,846–67,049 bp · +
rps18 · ON641292.1 · 67,220–67,525 bp · +
psbB · ON641292.1 · 71,550–73,076 bp · +
psbT · ON641292.1 · 73,258–73,359 bp · +
psbH · ON641292.1 · 73,665–73,886 bp · +
petB · ON641292.1 · 74,012–75,383 bp · +
petD · ON641292.1 · 75,566–76,744 bp · +
ycf2 · ON641292.1 · 85,232–92,023 bp · +
ycf15 · ON641292.1 · 92,114–92,362 bp · +
trnV-GAC · ON641292.1 · 98,683–98,754 bp · +
rrn16 · ON641292.1 · 98,981–100,471 bp · +
trnI-GAU · ON641292.1 · 100,770–101,795 bp · +
trnA-UGC · ON641292.1 · 101,865–102,742 bp · +
rrn23 · ON641292.1 · 102,908–105,718 bp · +
rrn4.5 · ON641292.1 · 105,817–105,919 bp · +
rrn5 · ON641292.1 · 106,180–106,300 bp · +
trnR-ACG · ON641292.1 · 106,544–106,617 bp · +
ycf1 · ON641292.1 · 107,544–108,674 bp · +
rpl32 · ON641292.1 · 111,262–111,432 bp · +
trnL-UAG · ON641292.1 · 112,149–112,228 bp · +
ccsA · ON641292.1 · 112,331–113,308 bp · +
trnN-GUU · ON641292.1 · 127,627–127,698 bp · +
rps7 · ON641292.1 · 138,642–139,109 bp · +
ndhB · ON641292.1 · 139,375–141,582 bp · +
trnL-CAA · ON641292.1 · 142,143–142,223 bp · +
trnI-CAU · ON641292.1 · 149,698–149,771 bp · +
rpl23 · ON641292.1 · 149,937–150,218 bp · +
rpl2 · ON641292.1 · 150,237–151,724 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Origanum vulgare subsp. virens
ANNOTATED PLASTOME
ON641292.1
151,826 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37956 75913 113870 151826 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 427 1485 1059 Locate
trnK-UUU gene − 1706 4257 2552 Locate
matK gene − 1991 3520 1530 Locate
rps16 gene − 4807 5951 1145 Locate
trnQ-UUG gene − 6879 6950 72 Locate
psbK gene + 7331 7516 186 Locate
psbI gene + 7908 8018 111 Locate
trnS-GCU gene − 8169 8256 88 Locate
trnG-UCC gene + 8979 9733 755 Locate
trnR-UCU gene + 9914 9985 72 Locate
atpA gene − 10093 11616 1524 Locate
atpF gene − 11711 12961 1251 Locate
atpH gene − 13228 13473 246 Locate
atpI gene − 14520 15263 744 Locate
rps2 gene − 15489 16199 711 Locate
rpoC2 gene − 16421 20602 4182 Locate
rpoC1 gene − 20775 23593 2819 Locate
rpoB gene − 23620 26832 3213 Locate
trnC-GCA gene + 27954 28024 71 Locate
petN gene + 28185 28274 90 Locate
psbM gene − 29248 29352 105 Locate
trnD-GUC gene − 29870 29943 74 Locate
trnY-GUA gene − 30054 30137 84 Locate
trnE-UUC gene − 30217 30289 73 Locate
trnT-GGU gene + 30852 30923 72 Locate
psbD gene + 32270 33331 1062 Locate
psbC gene + 33315 34700 1386 Locate
trnS-UGA gene − 34947 35039 93 Locate
psbZ gene + 35379 35567 189 Locate
trnG-GCC gene + 35839 35909 71 Locate
trnfM-CAU gene − 36072 36145 74 Locate
rps14 gene − 36295 36597 303 Locate
psaB gene − 36720 38924 2205 Locate
psaA gene − 38950 41202 2253 Locate
pafI gene − 41952 43881 1930 Locate
trnS-GGA gene + 44732 44818 87 Locate
rps4 gene − 45106 45711 606 Locate
trnT-UGU gene − 46102 46174 73 Locate
trnL-UAA gene + 46847 47401 555 Locate
trnF-GAA gene + 47694 47766 73 Locate
ndhJ gene − 48403 48879 477 Locate
ndhK gene − 48990 49667 678 Locate
ndhC gene − 49719 50081 363 Locate
trnV-UAC gene − 51051 51695 645 Locate
trnM-CAU gene + 51876 51948 73 Locate
atpE gene − 52144 52545 402 Locate
atpB gene − 52542 54032 1491 Locate
rbcL gene + 54831 56264 1434 Locate
accD gene + 56955 58442 1488 Locate
psaI gene + 58906 59016 111 Locate
pafII gene + 59464 60018 555 Locate
cemA gene + 60648 61337 690 Locate
petA gene + 61551 62513 963 Locate
psbJ gene − 63510 63632 123 Locate
psbL gene − 63767 63883 117 Locate
psbF gene − 63907 64026 120 Locate
psbE gene − 64041 64292 252 Locate
petL gene + 65170 65265 96 Locate
petG gene + 65435 65548 114 Locate
trnW-CCA gene − 65663 65736 74 Locate
trnP-UGG gene − 65910 65983 74 Locate
psaJ gene + 66263 66397 135 Locate
rpl33 gene + 66846 67049 204 Locate
rps18 gene + 67220 67525 306 Locate
rpl20 gene − 67760 68146 387 Locate
rps12 gene − 68956 69069 114 Locate
clpP1 gene − 69194 71098 1905 Locate
psbB gene + 71550 73076 1527 Locate
psbT gene + 73258 73359 102 Locate
pbf1 gene − 73428 73559 132 Locate
psbH gene + 73665 73886 222 Locate
petB gene + 74012 75383 1372 Locate
petD gene + 75566 76744 1179 Locate
rpoA gene − 76927 77934 1008 Locate
rps11 gene − 78006 78422 417 Locate
rpl36 gene − 78532 78645 114 Locate
infA gene − 78741 78974 234 Locate
rps8 gene − 79096 79500 405 Locate
rpl14 gene − 79670 80038 369 Locate
rpl16 gene − 80170 81450 1281 Locate
rps3 gene − 81595 82257 663 Locate
rpl22 gene − 82242 82709 468 Locate
rps19 gene − 82779 83057 279 Locate
rpl2 gene − 83117 84604 1488 Locate
rpl23 gene − 84623 84904 282 Locate
trnI-CAU gene − 85070 85143 74 Locate
ycf2 gene + 85232 92023 6792 Locate
ycf15 gene + 92114 92362 249 Locate
trnL-CAA gene − 92618 92698 81 Locate
ndhB gene − 93259 95466 2208 Locate
rps7 gene − 95732 96199 468 Locate
rps12 gene − 96253 97046 794 Locate
trnV-GAC gene + 98683 98754 72 Locate
rrn16 gene + 98981 100471 1491 Locate
trnI-GAU gene + 100770 101795 1026 Locate
trnA-UGC gene + 101865 102742 878 Locate
rrn23 gene + 102908 105718 2811 Locate
rrn4.5 gene + 105817 105919 103 Locate
rrn5 gene + 106180 106300 121 Locate
trnR-ACG gene + 106544 106617 74 Locate
trnN-GUU gene − 107143 107214 72 Locate
ycf1 gene + 107544 108674 1131 Locate
ndhF gene − 108568 110805 2238 Locate
rpl32 gene + 111262 111432 171 Locate
trnL-UAG gene + 112149 112228 80 Locate
ccsA gene + 112331 113308 978 Locate
ndhD gene − 113561 114712 1152 Locate
psaC gene − 115186 115431 246 Locate
ndhE gene − 115666 115971 306 Locate
ndhG gene − 116195 116725 531 Locate
ndhI gene − 117099 117605 507 Locate
ndhA gene − 117681 119771 2091 Locate
ndhH gene − 119773 120954 1182 Locate
rps15 gene − 121054 121326 273 Locate
ycf1 gene − 121754 127297 5544 Locate
trnN-GUU gene + 127627 127698 72 Locate
trnR-ACG gene − 128224 128297 74 Locate
rrn5 gene − 128541 128661 121 Locate
rrn4.5 gene − 128922 129024 103 Locate
rrn23 gene − 129123 131933 2811 Locate
trnA-UGC gene − 132099 132976 878 Locate
trnI-GAU gene − 133046 134071 1026 Locate
rrn16 gene − 134370 135860 1491 Locate
trnV-GAC gene − 136087 136158 72 Locate
rps7 gene + 138642 139109 468 Locate
ndhB gene + 139375 141582 2208 Locate
trnL-CAA gene + 142143 142223 81 Locate
ycf15 gene − 142479 142727 249 Locate
ycf2 gene − 142818 149609 6792 Locate
trnI-CAU gene + 149698 149771 74 Locate
rpl23 gene + 149937 150218 282 Locate
rpl2 gene + 150237 151724 1488 Locate
Status Available
Accession ON641292.1
Length 151,826 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources