Origanum vulgare subsp. vulgare chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON641323.1 · 11–85 bp · −
psbA · ON641323.1 · 412–1,470 bp · −
trnK-UUU · ON641323.1 · 1,691–4,241 bp · −
matK · ON641323.1 · 1,976–3,505 bp · −
rps16 · ON641323.1 · 4,791–5,935 bp · −
trnQ-UUG · ON641323.1 · 6,870–6,941 bp · −
trnS-GCU · ON641323.1 · 8,159–8,246 bp · −
atpA · ON641323.1 · 10,086–11,609 bp · −
atpF · ON641323.1 · 11,704–12,956 bp · −
atpH · ON641323.1 · 13,223–13,468 bp · −
atpI · ON641323.1 · 14,513–15,256 bp · −
rps2 · ON641323.1 · 15,480–16,190 bp · −
rpoC2 · ON641323.1 · 16,408–20,589 bp · −
rpoC1 · ON641323.1 · 20,762–23,580 bp · −
rpoB · ON641323.1 · 23,607–26,819 bp · −
psbM · ON641323.1 · 29,245–29,349 bp · −
trnD-GUC · ON641323.1 · 29,867–29,940 bp · −
trnY-GUA · ON641323.1 · 30,056–30,139 bp · −
trnE-UUC · ON641323.1 · 30,219–30,291 bp · −
trnS-UGA · ON641323.1 · 34,946–35,038 bp · −
trnfM-CAU · ON641323.1 · 36,074–36,147 bp · −
rps14 · ON641323.1 · 36,297–36,599 bp · −
psaB · ON641323.1 · 36,722–38,926 bp · −
psaA · ON641323.1 · 38,952–41,204 bp · −
pafI · ON641323.1 · 41,946–43,876 bp · −
rps4 · ON641323.1 · 45,100–45,705 bp · −
trnT-UGU · ON641323.1 · 46,095–46,167 bp · −
ndhJ · ON641323.1 · 48,388–48,864 bp · −
ndhK · ON641323.1 · 48,975–49,652 bp · −
ndhC · ON641323.1 · 49,704–50,066 bp · −
trnV-UAC · ON641323.1 · 51,037–51,681 bp · −
atpE · ON641323.1 · 52,130–52,531 bp · −
atpB · ON641323.1 · 52,528–54,018 bp · −
psbJ · ON641323.1 · 63,495–63,617 bp · −
psbL · ON641323.1 · 63,752–63,868 bp · −
psbF · ON641323.1 · 63,892–64,011 bp · −
psbE · ON641323.1 · 64,026–64,277 bp · −
trnW-CCA · ON641323.1 · 65,648–65,721 bp · −
trnP-UGG · ON641323.1 · 65,895–65,968 bp · −
rpl20 · ON641323.1 · 67,748–68,134 bp · −
rps12 · ON641323.1 · 68,944–69,057 bp · −
rps12 · ON641323.1 · 96,256–97,049 bp · −
clpP1 · ON641323.1 · 69,182–71,094 bp · −
pbf1 · ON641323.1 · 73,424–73,555 bp · −
rpoA · ON641323.1 · 76,932–77,939 bp · −
rps11 · ON641323.1 · 78,011–78,427 bp · −
rpl36 · ON641323.1 · 78,537–78,650 bp · −
infA · ON641323.1 · 78,746–78,979 bp · −
rps8 · ON641323.1 · 79,102–79,506 bp · −
rpl14 · ON641323.1 · 79,678–80,046 bp · −
rpl16 · ON641323.1 · 80,178–81,459 bp · −
rps3 · ON641323.1 · 81,604–82,266 bp · −
rpl22 · ON641323.1 · 82,251–82,718 bp · −
rps19 · ON641323.1 · 82,788–83,066 bp · −
rpl2 · ON641323.1 · 83,126–84,613 bp · −
rpl23 · ON641323.1 · 84,632–84,913 bp · −
trnI-CAU · ON641323.1 · 85,079–85,152 bp · −
trnL-CAA · ON641323.1 · 92,621–92,701 bp · −
ndhB · ON641323.1 · 93,262–95,469 bp · −
rps7 · ON641323.1 · 95,735–96,202 bp · −
trnN-GUU · ON641323.1 · 107,144–107,215 bp · −
ndhF · ON641323.1 · 108,569–110,800 bp · −
ndhD · ON641323.1 · 113,562–114,950 bp · −
psaC · ON641323.1 · 115,188–115,433 bp · −
ndhE · ON641323.1 · 115,668–115,973 bp · −
ndhG · ON641323.1 · 116,197–116,727 bp · −
ndhI · ON641323.1 · 117,110–117,616 bp · −
ndhA · ON641323.1 · 117,692–119,783 bp · −
ndhH · ON641323.1 · 119,785–120,966 bp · −
rps15 · ON641323.1 · 121,066–121,338 bp · −
ycf1 · ON641323.1 · 121,766–127,309 bp · −
trnR-ACG · ON641323.1 · 128,236–128,309 bp · −
rrn5 · ON641323.1 · 128,553–128,673 bp · −
rrn4.5 · ON641323.1 · 128,934–129,036 bp · −
rrn23 · ON641323.1 · 129,135–131,945 bp · −
trnA-UGC · ON641323.1 · 132,111–132,988 bp · −
trnI-GAU · ON641323.1 · 133,058–134,081 bp · −
rrn16 · ON641323.1 · 134,380–135,870 bp · −
trnV-GAC · ON641323.1 · 136,097–136,168 bp · −
ycf15 · ON641323.1 · 142,489–142,737 bp · −
ycf2 · ON641323.1 · 142,828–149,613 bp · −
psbK · ON641323.1 · 7,322–7,507 bp · +
psbI · ON641323.1 · 7,899–8,009 bp · +
trnG-UCC · ON641323.1 · 8,972–9,726 bp · +
trnR-UCU · ON641323.1 · 9,907–9,978 bp · +
trnC-GCA · ON641323.1 · 27,947–28,017 bp · +
petN · ON641323.1 · 28,178–28,267 bp · +
trnT-GGU · ON641323.1 · 30,854–30,925 bp · +
psbD · ON641323.1 · 32,270–33,331 bp · +
psbC · ON641323.1 · 33,315–34,700 bp · +
psbZ · ON641323.1 · 35,378–35,566 bp · +
trnG-GCC · ON641323.1 · 35,838–35,908 bp · +
trnS-GGA · ON641323.1 · 44,726–44,812 bp · +
trnL-UAA · ON641323.1 · 46,832–47,386 bp · +
trnF-GAA · ON641323.1 · 47,679–47,751 bp · +
trnM-CAU · ON641323.1 · 51,862–51,934 bp · +
rbcL · ON641323.1 · 54,817–56,250 bp · +
accD · ON641323.1 · 56,948–58,429 bp · +
psaI · ON641323.1 · 58,893–59,003 bp · +
pafII · ON641323.1 · 59,454–60,008 bp · +
cemA · ON641323.1 · 60,633–61,322 bp · +
petA · ON641323.1 · 61,536–62,498 bp · +
petL · ON641323.1 · 65,155–65,250 bp · +
petG · ON641323.1 · 65,420–65,533 bp · +
psaJ · ON641323.1 · 66,248–66,382 bp · +
rpl33 · ON641323.1 · 66,832–67,035 bp · +
rps18 · ON641323.1 · 67,206–67,511 bp · +
psbB · ON641323.1 · 71,546–73,072 bp · +
psbT · ON641323.1 · 73,254–73,355 bp · +
psbH · ON641323.1 · 73,661–73,882 bp · +
petB · ON641323.1 · 74,008–75,388 bp · +
petD · ON641323.1 · 75,571–76,749 bp · +
ycf2 · ON641323.1 · 85,241–92,026 bp · +
ycf15 · ON641323.1 · 92,117–92,365 bp · +
trnV-GAC · ON641323.1 · 98,686–98,757 bp · +
rrn16 · ON641323.1 · 98,984–100,474 bp · +
trnI-GAU · ON641323.1 · 100,773–101,796 bp · +
trnA-UGC · ON641323.1 · 101,866–102,743 bp · +
rrn23 · ON641323.1 · 102,909–105,719 bp · +
rrn4.5 · ON641323.1 · 105,818–105,920 bp · +
rrn5 · ON641323.1 · 106,181–106,301 bp · +
trnR-ACG · ON641323.1 · 106,545–106,618 bp · +
ycf1 · ON641323.1 · 107,545–108,675 bp · +
rpl32 · ON641323.1 · 111,258–111,428 bp · +
trnL-UAG · ON641323.1 · 112,150–112,229 bp · +
ccsA · ON641323.1 · 112,332–113,309 bp · +
trnN-GUU · ON641323.1 · 127,639–127,710 bp · +
rps7 · ON641323.1 · 138,652–139,119 bp · +
ndhB · ON641323.1 · 139,385–141,592 bp · +
trnL-CAA · ON641323.1 · 142,153–142,233 bp · +
trnI-CAU · ON641323.1 · 149,702–149,775 bp · +
rpl23 · ON641323.1 · 149,941–150,222 bp · +
rpl2 · ON641323.1 · 150,241–151,728 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Origanum vulgare subsp. vulgare
ANNOTATED PLASTOME
ON641323.1
151,830 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37958 75915 113872 151830 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 412 1470 1059 Locate
trnK-UUU gene − 1691 4241 2551 Locate
matK gene − 1976 3505 1530 Locate
rps16 gene − 4791 5935 1145 Locate
trnQ-UUG gene − 6870 6941 72 Locate
psbK gene + 7322 7507 186 Locate
psbI gene + 7899 8009 111 Locate
trnS-GCU gene − 8159 8246 88 Locate
trnG-UCC gene + 8972 9726 755 Locate
trnR-UCU gene + 9907 9978 72 Locate
atpA gene − 10086 11609 1524 Locate
atpF gene − 11704 12956 1253 Locate
atpH gene − 13223 13468 246 Locate
atpI gene − 14513 15256 744 Locate
rps2 gene − 15480 16190 711 Locate
rpoC2 gene − 16408 20589 4182 Locate
rpoC1 gene − 20762 23580 2819 Locate
rpoB gene − 23607 26819 3213 Locate
trnC-GCA gene + 27947 28017 71 Locate
petN gene + 28178 28267 90 Locate
psbM gene − 29245 29349 105 Locate
trnD-GUC gene − 29867 29940 74 Locate
trnY-GUA gene − 30056 30139 84 Locate
trnE-UUC gene − 30219 30291 73 Locate
trnT-GGU gene + 30854 30925 72 Locate
psbD gene + 32270 33331 1062 Locate
psbC gene + 33315 34700 1386 Locate
trnS-UGA gene − 34946 35038 93 Locate
psbZ gene + 35378 35566 189 Locate
trnG-GCC gene + 35838 35908 71 Locate
trnfM-CAU gene − 36074 36147 74 Locate
rps14 gene − 36297 36599 303 Locate
psaB gene − 36722 38926 2205 Locate
psaA gene − 38952 41204 2253 Locate
pafI gene − 41946 43876 1931 Locate
trnS-GGA gene + 44726 44812 87 Locate
rps4 gene − 45100 45705 606 Locate
trnT-UGU gene − 46095 46167 73 Locate
trnL-UAA gene + 46832 47386 555 Locate
trnF-GAA gene + 47679 47751 73 Locate
ndhJ gene − 48388 48864 477 Locate
ndhK gene − 48975 49652 678 Locate
ndhC gene − 49704 50066 363 Locate
trnV-UAC gene − 51037 51681 645 Locate
trnM-CAU gene + 51862 51934 73 Locate
atpE gene − 52130 52531 402 Locate
atpB gene − 52528 54018 1491 Locate
rbcL gene + 54817 56250 1434 Locate
accD gene + 56948 58429 1482 Locate
psaI gene + 58893 59003 111 Locate
pafII gene + 59454 60008 555 Locate
cemA gene + 60633 61322 690 Locate
petA gene + 61536 62498 963 Locate
psbJ gene − 63495 63617 123 Locate
psbL gene − 63752 63868 117 Locate
psbF gene − 63892 64011 120 Locate
psbE gene − 64026 64277 252 Locate
petL gene + 65155 65250 96 Locate
petG gene + 65420 65533 114 Locate
trnW-CCA gene − 65648 65721 74 Locate
trnP-UGG gene − 65895 65968 74 Locate
psaJ gene + 66248 66382 135 Locate
rpl33 gene + 66832 67035 204 Locate
rps18 gene + 67206 67511 306 Locate
rpl20 gene − 67748 68134 387 Locate
rps12 gene − 68944 69057 114 Locate
clpP1 gene − 69182 71094 1913 Locate
psbB gene + 71546 73072 1527 Locate
psbT gene + 73254 73355 102 Locate
pbf1 gene − 73424 73555 132 Locate
psbH gene + 73661 73882 222 Locate
petB gene + 74008 75388 1381 Locate
petD gene + 75571 76749 1179 Locate
rpoA gene − 76932 77939 1008 Locate
rps11 gene − 78011 78427 417 Locate
rpl36 gene − 78537 78650 114 Locate
infA gene − 78746 78979 234 Locate
rps8 gene − 79102 79506 405 Locate
rpl14 gene − 79678 80046 369 Locate
rpl16 gene − 80178 81459 1282 Locate
rps3 gene − 81604 82266 663 Locate
rpl22 gene − 82251 82718 468 Locate
rps19 gene − 82788 83066 279 Locate
rpl2 gene − 83126 84613 1488 Locate
rpl23 gene − 84632 84913 282 Locate
trnI-CAU gene − 85079 85152 74 Locate
ycf2 gene + 85241 92026 6786 Locate
ycf15 gene + 92117 92365 249 Locate
trnL-CAA gene − 92621 92701 81 Locate
ndhB gene − 93262 95469 2208 Locate
rps7 gene − 95735 96202 468 Locate
rps12 gene − 96256 97049 794 Locate
trnV-GAC gene + 98686 98757 72 Locate
rrn16 gene + 98984 100474 1491 Locate
trnI-GAU gene + 100773 101796 1024 Locate
trnA-UGC gene + 101866 102743 878 Locate
rrn23 gene + 102909 105719 2811 Locate
rrn4.5 gene + 105818 105920 103 Locate
rrn5 gene + 106181 106301 121 Locate
trnR-ACG gene + 106545 106618 74 Locate
trnN-GUU gene − 107144 107215 72 Locate
ycf1 gene + 107545 108675 1131 Locate
ndhF gene − 108569 110800 2232 Locate
rpl32 gene + 111258 111428 171 Locate
trnL-UAG gene + 112150 112229 80 Locate
ccsA gene + 112332 113309 978 Locate
ndhD gene − 113562 114950 1389 Locate
psaC gene − 115188 115433 246 Locate
ndhE gene − 115668 115973 306 Locate
ndhG gene − 116197 116727 531 Locate
ndhI gene − 117110 117616 507 Locate
ndhA gene − 117692 119783 2092 Locate
ndhH gene − 119785 120966 1182 Locate
rps15 gene − 121066 121338 273 Locate
ycf1 gene − 121766 127309 5544 Locate
trnN-GUU gene + 127639 127710 72 Locate
trnR-ACG gene − 128236 128309 74 Locate
rrn5 gene − 128553 128673 121 Locate
rrn4.5 gene − 128934 129036 103 Locate
rrn23 gene − 129135 131945 2811 Locate
trnA-UGC gene − 132111 132988 878 Locate
trnI-GAU gene − 133058 134081 1024 Locate
rrn16 gene − 134380 135870 1491 Locate
trnV-GAC gene − 136097 136168 72 Locate
rps7 gene + 138652 139119 468 Locate
ndhB gene + 139385 141592 2208 Locate
trnL-CAA gene + 142153 142233 81 Locate
ycf15 gene − 142489 142737 249 Locate
ycf2 gene − 142828 149613 6786 Locate
trnI-CAU gene + 149702 149775 74 Locate
rpl23 gene + 149941 150222 282 Locate
rpl2 gene + 150241 151728 1488 Locate
Status Available
Accession ON641323.1
Length 151,830 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources