What is included in the current release
This record currently exposes Plastome, Genome resources and remains cross-linked with phylogeny, species search, and analysis pages.
Species scientific record
Origanum vulgare
Aliases: Origanum vulgare
Origanum vulgare is curated as a Nepetoideae species entry in LamiOmicsDB. The current release links Plastome, Genome resources with tree-guided navigation, species-level browsing, and analysis tools.
Evidence coverage
Current public omics layers
1 available · 1 metadata only · 2 unavailable
Record overview
Taxonomy, biological context and the scope of the current release.
Use this page as the central entry for phylogeny, omics availability, locus browsing, and tool-assisted exploration.
Recommended use
A practical workflow is to locate the species through the phylogeny or catalogue first, then continue to omics, gene, or tool pages for deeper inspection.
- Distribution
- Distribution notes have not yet been manually curated for this species and will be expanded in later releases.
- Research / medicinal context
- Species-specific medicinal annotations are not yet fully curated; the page currently emphasizes data availability and comparative access.
Omics evidence matrix
Accession-backed, metadata-only and unavailable states remain scientifically distinct.
| Layer | Status | Accession / dataset | Assembly size | GC | Genes / features | Coordinates | |
|---|---|---|---|---|---|---|---|
Nuclear genome |
— | — | — | — | — | View layer | |
Chloroplast genome |
Available | PQ468695.1 |
151,827 bp | 37.8% | 134 | 134 loci | View layer |
Mitochondrial genome |
Unavailable | — | — | — | — | — | View layer |
Transcriptome |
Unavailable | — | — | — | — | — | View layer |
Genes linked to this species
Gene symbols are included only when DNA sequence or coordinate evidence exists.
| Gene | Full name / pathway | Localization | DNA records | Coordinate loci | |
|---|---|---|---|---|---|
| accD | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atpA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpB | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atpE | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpF | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpH | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpI | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| ccsA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| cemA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| clpP1 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| infA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| matK | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
Publication-safe DNA records
Public sequence content is DNA-only; no protein FASTA is exposed.
accDaccD
PQ4686951488 bpchloroplast genome
Open FASTA
atpBatpB
PQ4686951491 bpchloroplast genome
Open FASTA
matKmatK
PQ4686951530 bpchloroplast genome
Open FASTA
ndhFndhF
PQ4686952232 bpchloroplast genome
Open FASTA
psbApsbA
PQ4686951059 bpchloroplast genome
Open FASTA
rbcLrbcL
PQ4686951434 bpchloroplast genome
Open FASTA
rps12rps12
PQ468695908 bpchloroplast genome
Open FASTA
ycf1ycf1
PQ4686955544 bpchloroplast genome
Open FASTA
Pathway evidence
Family-level summaries and concrete candidate loci are kept separate.
6307 candidate records across 98 modules1001 strong locus records are available for inspection.