Origanum vulgare chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PQ468695.1 · 1–73 bp · −
trnH-GUG · PQ468695.1 · 151,826–151,827 bp · −
psbA · PQ468695.1 · 415–1,473 bp · −
trnK-UUU · PQ468695.1 · 1,694–4,245 bp · −
matK · PQ468695.1 · 1,979–3,508 bp · −
rps16 · PQ468695.1 · 4,797–5,941 bp · −
trnQ-UUG · PQ468695.1 · 6,871–6,942 bp · −
trnS-GCU · PQ468695.1 · 8,170–8,257 bp · −
atpA · PQ468695.1 · 10,071–11,594 bp · −
atpF · PQ468695.1 · 11,689–12,946 bp · −
atpH · PQ468695.1 · 13,213–13,458 bp · −
atpI · PQ468695.1 · 14,503–15,246 bp · −
rps2 · PQ468695.1 · 15,471–16,181 bp · −
rpoC2 · PQ468695.1 · 16,404–20,591 bp · −
rpoC1 · PQ468695.1 · 20,764–23,582 bp · −
rpoB · PQ468695.1 · 23,609–26,821 bp · −
psbM · PQ468695.1 · 29,252–29,356 bp · −
trnD-GUC · PQ468695.1 · 29,874–29,947 bp · −
trnY-GUA · PQ468695.1 · 30,058–30,141 bp · −
trnE-UUC · PQ468695.1 · 30,221–30,293 bp · −
trnS-UGA · PQ468695.1 · 34,960–35,052 bp · −
trnfM-CAU · PQ468695.1 · 36,080–36,153 bp · −
rps14 · PQ468695.1 · 36,303–36,605 bp · −
psaB · PQ468695.1 · 36,728–38,932 bp · −
psaA · PQ468695.1 · 38,958–41,210 bp · −
pafI · PQ468695.1 · 41,961–43,890 bp · −
rps4 · PQ468695.1 · 45,116–45,721 bp · −
trnT-UGU · PQ468695.1 · 46,113–46,185 bp · −
ndhJ · PQ468695.1 · 48,415–48,891 bp · −
ndhK · PQ468695.1 · 49,002–49,679 bp · −
ndhC · PQ468695.1 · 49,731–50,093 bp · −
trnV-UAC · PQ468695.1 · 51,051–51,695 bp · −
atpE · PQ468695.1 · 52,144–52,545 bp · −
atpB · PQ468695.1 · 52,542–54,032 bp · −
psbJ · PQ468695.1 · 63,509–63,631 bp · −
psbL · PQ468695.1 · 63,766–63,882 bp · −
psbF · PQ468695.1 · 63,906–64,025 bp · −
psbE · PQ468695.1 · 64,040–64,291 bp · −
trnW-CCA · PQ468695.1 · 65,662–65,735 bp · −
trnP-UGG · PQ468695.1 · 65,909–65,982 bp · −
rpl20 · PQ468695.1 · 67,762–68,148 bp · −
rps12 · PQ468695.1 · 68,957–69,070 bp · −
rps12 · PQ468695.1 · 96,249–97,042 bp · −
clpP1 · PQ468695.1 · 69,195–71,097 bp · −
pbf1 · PQ468695.1 · 73,427–73,558 bp · −
rpoA · PQ468695.1 · 76,928–77,935 bp · −
rps11 · PQ468695.1 · 78,007–78,423 bp · −
rpl36 · PQ468695.1 · 78,533–78,646 bp · −
infA · PQ468695.1 · 78,742–78,975 bp · −
rps8 · PQ468695.1 · 79,097–79,501 bp · −
rpl14 · PQ468695.1 · 79,671–80,039 bp · −
rpl16 · PQ468695.1 · 80,171–80,581 bp · −
rps3 · PQ468695.1 · 81,596–82,258 bp · −
rpl22 · PQ468695.1 · 82,243–82,710 bp · −
rps19 · PQ468695.1 · 82,780–83,058 bp · −
rpl2 · PQ468695.1 · 83,119–84,606 bp · −
rpl23 · PQ468695.1 · 84,625–84,906 bp · −
trnI-CAU · PQ468695.1 · 85,072–85,145 bp · −
trnL-CAA · PQ468695.1 · 92,614–92,694 bp · −
ndhB · PQ468695.1 · 93,255–95,462 bp · −
rps7 · PQ468695.1 · 95,728–96,195 bp · −
trnN-GUU · PQ468695.1 · 107,138–107,209 bp · −
ndhF · PQ468695.1 · 108,563–110,794 bp · −
ndhD · PQ468695.1 · 113,553–114,941 bp · −
psaC · PQ468695.1 · 115,179–115,424 bp · −
ndhE · PQ468695.1 · 115,659–115,964 bp · −
ndhG · PQ468695.1 · 116,188–116,718 bp · −
ndhI · PQ468695.1 · 117,094–117,600 bp · −
ndhA · PQ468695.1 · 117,676–119,767 bp · −
ndhH · PQ468695.1 · 119,769–120,950 bp · −
rps15 · PQ468695.1 · 121,050–121,322 bp · −
ycf1 · PQ468695.1 · 121,750–127,293 bp · −
trnR-ACG · PQ468695.1 · 128,220–128,293 bp · −
rrn5 · PQ468695.1 · 128,537–128,657 bp · −
rrn4.5 · PQ468695.1 · 128,918–129,020 bp · −
rrn23 · PQ468695.1 · 129,119–131,929 bp · −
trnA-UGC · PQ468695.1 · 132,095–132,972 bp · −
trnI-GAU · PQ468695.1 · 133,042–134,066 bp · −
rrn16 · PQ468695.1 · 134,365–135,855 bp · −
trnV-GAC · PQ468695.1 · 136,082–136,153 bp · −
ycf15 · PQ468695.1 · 142,474–142,722 bp · −
ycf2 · PQ468695.1 · 142,813–149,598 bp · −
psbK · PQ468695.1 · 7,323–7,508 bp · +
psbI · PQ468695.1 · 7,900–8,010 bp · +
trnG-UCC · PQ468695.1 · 8,957–9,711 bp · +
trnR-UCU · PQ468695.1 · 9,892–9,963 bp · +
trnC-GCA · PQ468695.1 · 27,954–28,024 bp · +
petN · PQ468695.1 · 28,185–28,274 bp · +
trnT-GGU · PQ468695.1 · 30,865–30,936 bp · +
psbD · PQ468695.1 · 32,283–33,344 bp · +
psbC · PQ468695.1 · 33,328–34,713 bp · +
psbZ · PQ468695.1 · 35,387–35,575 bp · +
trnG-GCC · PQ468695.1 · 35,847–35,917 bp · +
trnS-GGA · PQ468695.1 · 44,742–44,828 bp · +
trnL-UAA · PQ468695.1 · 46,859–47,413 bp · +
trnF-GAA · PQ468695.1 · 47,706–47,778 bp · +
trnM-CAU · PQ468695.1 · 51,876–51,948 bp · +
rbcL · PQ468695.1 · 54,831–56,264 bp · +
accD · PQ468695.1 · 56,955–58,442 bp · +
psaI · PQ468695.1 · 58,906–59,016 bp · +
pafII · PQ468695.1 · 59,463–60,017 bp · +
cemA · PQ468695.1 · 60,647–61,336 bp · +
petA · PQ468695.1 · 61,550–62,512 bp · +
petL · PQ468695.1 · 65,169–65,264 bp · +
petG · PQ468695.1 · 65,434–65,547 bp · +
psaJ · PQ468695.1 · 66,262–66,396 bp · +
rpl33 · PQ468695.1 · 66,847–67,050 bp · +
rps18 · PQ468695.1 · 67,221–67,526 bp · +
rps12 · PQ468695.1 · 137,790–138,583 bp · +
psbB · PQ468695.1 · 71,549–73,075 bp · +
psbT · PQ468695.1 · 73,257–73,358 bp · +
psbH · PQ468695.1 · 73,664–73,885 bp · +
petB · PQ468695.1 · 74,011–75,384 bp · +
petD · PQ468695.1 · 75,567–76,745 bp · +
ycf2 · PQ468695.1 · 85,234–92,019 bp · +
ycf15 · PQ468695.1 · 92,110–92,358 bp · +
trnV-GAC · PQ468695.1 · 98,679–98,750 bp · +
rrn16 · PQ468695.1 · 98,977–100,467 bp · +
trnI-GAU · PQ468695.1 · 100,766–101,790 bp · +
trnA-UGC · PQ468695.1 · 101,860–102,737 bp · +
rrn23 · PQ468695.1 · 102,903–105,713 bp · +
rrn4.5 · PQ468695.1 · 105,812–105,914 bp · +
rrn5 · PQ468695.1 · 106,175–106,295 bp · +
trnR-ACG · PQ468695.1 · 106,539–106,612 bp · +
ycf1 · PQ468695.1 · 107,539–108,669 bp · +
rpl32 · PQ468695.1 · 111,251–111,421 bp · +
trnL-UAG · PQ468695.1 · 112,144–112,223 bp · +
ccsA · PQ468695.1 · 112,326–113,303 bp · +
trnN-GUU · PQ468695.1 · 127,623–127,694 bp · +
rps7 · PQ468695.1 · 138,637–139,104 bp · +
ndhB · PQ468695.1 · 139,370–141,577 bp · +
trnL-CAA · PQ468695.1 · 142,138–142,218 bp · +
trnI-CAU · PQ468695.1 · 149,687–149,760 bp · +
rpl23 · PQ468695.1 · 149,926–150,207 bp · +
rpl2 · PQ468695.1 · 150,226–151,713 bp · +
rps19 · PQ468695.1 · 151,773–151,827 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Origanum vulgare
ANNOTATED PLASTOME
PQ468695.1
151,827 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37957 75914 113870 151827 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
136 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 73 73 Locate
psbA gene − 415 1473 1059 Locate
trnK-UUU gene − 1694 4245 2552 Locate
matK gene − 1979 3508 1530 Locate
rps16 gene − 4797 5941 1145 Locate
trnQ-UUG gene − 6871 6942 72 Locate
psbK gene + 7323 7508 186 Locate
psbI gene + 7900 8010 111 Locate
trnS-GCU gene − 8170 8257 88 Locate
trnG-UCC gene + 8957 9711 755 Locate
trnR-UCU gene + 9892 9963 72 Locate
atpA gene − 10071 11594 1524 Locate
atpF gene − 11689 12946 1258 Locate
atpH gene − 13213 13458 246 Locate
atpI gene − 14503 15246 744 Locate
rps2 gene − 15471 16181 711 Locate
rpoC2 gene − 16404 20591 4188 Locate
rpoC1 gene − 20764 23582 2819 Locate
rpoB gene − 23609 26821 3213 Locate
trnC-GCA gene + 27954 28024 71 Locate
petN gene + 28185 28274 90 Locate
psbM gene − 29252 29356 105 Locate
trnD-GUC gene − 29874 29947 74 Locate
trnY-GUA gene − 30058 30141 84 Locate
trnE-UUC gene − 30221 30293 73 Locate
trnT-GGU gene + 30865 30936 72 Locate
psbD gene + 32283 33344 1062 Locate
psbC gene + 33328 34713 1386 Locate
trnS-UGA gene − 34960 35052 93 Locate
psbZ gene + 35387 35575 189 Locate
trnG-GCC gene + 35847 35917 71 Locate
trnfM-CAU gene − 36080 36153 74 Locate
rps14 gene − 36303 36605 303 Locate
psaB gene − 36728 38932 2205 Locate
psaA gene − 38958 41210 2253 Locate
pafI gene − 41961 43890 1930 Locate
trnS-GGA gene + 44742 44828 87 Locate
rps4 gene − 45116 45721 606 Locate
trnT-UGU gene − 46113 46185 73 Locate
trnL-UAA gene + 46859 47413 555 Locate
trnF-GAA gene + 47706 47778 73 Locate
ndhJ gene − 48415 48891 477 Locate
ndhK gene − 49002 49679 678 Locate
ndhC gene − 49731 50093 363 Locate
trnV-UAC gene − 51051 51695 645 Locate
trnM-CAU gene + 51876 51948 73 Locate
atpE gene − 52144 52545 402 Locate
atpB gene − 52542 54032 1491 Locate
rbcL gene + 54831 56264 1434 Locate
accD gene + 56955 58442 1488 Locate
psaI gene + 58906 59016 111 Locate
pafII gene + 59463 60017 555 Locate
cemA gene + 60647 61336 690 Locate
petA gene + 61550 62512 963 Locate
psbJ gene − 63509 63631 123 Locate
psbL gene − 63766 63882 117 Locate
psbF gene − 63906 64025 120 Locate
psbE gene − 64040 64291 252 Locate
petL gene + 65169 65264 96 Locate
petG gene + 65434 65547 114 Locate
trnW-CCA gene − 65662 65735 74 Locate
trnP-UGG gene − 65909 65982 74 Locate
psaJ gene + 66262 66396 135 Locate
rpl33 gene + 66847 67050 204 Locate
rps18 gene + 67221 67526 306 Locate
rpl20 gene − 67762 68148 387 Locate
rps12 gene − 68957 69070 114 Locate
clpP1 gene − 69195 71097 1903 Locate
psbB gene + 71549 73075 1527 Locate
psbT gene + 73257 73358 102 Locate
pbf1 gene − 73427 73558 132 Locate
psbH gene + 73664 73885 222 Locate
petB gene + 74011 75384 1374 Locate
petD gene + 75567 76745 1179 Locate
rpoA gene − 76928 77935 1008 Locate
rps11 gene − 78007 78423 417 Locate
rpl36 gene − 78533 78646 114 Locate
infA gene − 78742 78975 234 Locate
rps8 gene − 79097 79501 405 Locate
rpl14 gene − 79671 80039 369 Locate
rpl16 gene − 80171 80581 411 Locate
rps3 gene − 81596 82258 663 Locate
rpl22 gene − 82243 82710 468 Locate
rps19 gene − 82780 83058 279 Locate
rpl2 gene − 83119 84606 1488 Locate
rpl23 gene − 84625 84906 282 Locate
trnI-CAU gene − 85072 85145 74 Locate
ycf2 gene + 85234 92019 6786 Locate
ycf15 gene + 92110 92358 249 Locate
trnL-CAA gene − 92614 92694 81 Locate
ndhB gene − 93255 95462 2208 Locate
rps7 gene − 95728 96195 468 Locate
rps12 gene − 96249 97042 794 Locate
trnV-GAC gene + 98679 98750 72 Locate
rrn16 gene + 98977 100467 1491 Locate
trnI-GAU gene + 100766 101790 1025 Locate
trnA-UGC gene + 101860 102737 878 Locate
rrn23 gene + 102903 105713 2811 Locate
rrn4.5 gene + 105812 105914 103 Locate
rrn5 gene + 106175 106295 121 Locate
trnR-ACG gene + 106539 106612 74 Locate
trnN-GUU gene − 107138 107209 72 Locate
ycf1 gene + 107539 108669 1131 Locate
ndhF gene − 108563 110794 2232 Locate
rpl32 gene + 111251 111421 171 Locate
trnL-UAG gene + 112144 112223 80 Locate
ccsA gene + 112326 113303 978 Locate
ndhD gene − 113553 114941 1389 Locate
psaC gene − 115179 115424 246 Locate
ndhE gene − 115659 115964 306 Locate
ndhG gene − 116188 116718 531 Locate
ndhI gene − 117094 117600 507 Locate
ndhA gene − 117676 119767 2092 Locate
ndhH gene − 119769 120950 1182 Locate
rps15 gene − 121050 121322 273 Locate
ycf1 gene − 121750 127293 5544 Locate
trnN-GUU gene + 127623 127694 72 Locate
trnR-ACG gene − 128220 128293 74 Locate
rrn5 gene − 128537 128657 121 Locate
rrn4.5 gene − 128918 129020 103 Locate
rrn23 gene − 129119 131929 2811 Locate
trnA-UGC gene − 132095 132972 878 Locate
trnI-GAU gene − 133042 134066 1025 Locate
rrn16 gene − 134365 135855 1491 Locate
trnV-GAC gene − 136082 136153 72 Locate
rps12 gene + 137790 138583 794 Locate
rps7 gene + 138637 139104 468 Locate
ndhB gene + 139370 141577 2208 Locate
trnL-CAA gene + 142138 142218 81 Locate
ycf15 gene − 142474 142722 249 Locate
ycf2 gene − 142813 149598 6786 Locate
trnI-CAU gene + 149687 149760 74 Locate
rpl23 gene + 149926 150207 282 Locate
rpl2 gene + 150226 151713 1488 Locate
rps19 gene + 151773 151827 55 Locate
trnH-GUG gene − 151826 151827 2 Locate
Status Available
Accession PQ468695.1
Length 151,827 bp
GC content 37.8%
Annotated genes 134
Gene sequence records 8
Translation Rna 38 Photosystem Ii 14 Other 16 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources