Orthosiphon aristatus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_082580.1 · 13–85 bp · −
psbA · NC_082580.1 · 385–1,443 bp · −
trnK-UUU · NC_082580.1 · 1,672–4,250 bp · −
matK · NC_082580.1 · 1,991–3,511 bp · −
rps16 · NC_082580.1 · 4,777–5,910 bp · −
trnQ-UUG · NC_082580.1 · 6,851–6,922 bp · −
trnS-GCU · NC_082580.1 · 8,144–8,231 bp · −
atpA · NC_082580.1 · 10,100–11,623 bp · −
atpF · NC_082580.1 · 11,725–12,965 bp · −
atpH · NC_082580.1 · 13,239–13,484 bp · −
atpI · NC_082580.1 · 14,518–15,261 bp · −
rps2 · NC_082580.1 · 15,488–16,198 bp · −
rpoC2 · NC_082580.1 · 16,407–20,564 bp · −
rpoC1 · NC_082580.1 · 20,741–23,547 bp · −
rpoB · NC_082580.1 · 23,574–26,786 bp · −
psbM · NC_082580.1 · 29,306–29,410 bp · −
trnD-GUC · NC_082580.1 · 29,933–30,006 bp · −
trnY-GUA · NC_082580.1 · 30,124–30,207 bp · −
trnE-UUC · NC_082580.1 · 30,291–30,363 bp · −
trnS-UGA · NC_082580.1 · 34,976–35,068 bp · −
trnM-CAU · NC_082580.1 · 36,078–36,151 bp · −
rps14 · NC_082580.1 · 36,288–36,590 bp · −
psaB · NC_082580.1 · 36,713–38,917 bp · −
psaA · NC_082580.1 · 38,943–41,195 bp · −
pafI · NC_082580.1 · 41,971–43,919 bp · −
rps4 · NC_082580.1 · 45,133–45,738 bp · −
trnT-UGU · NC_082580.1 · 46,136–46,208 bp · −
ndhJ · NC_082580.1 · 48,491–48,967 bp · −
ndhK · NC_082580.1 · 49,078–49,755 bp · −
ndhC · NC_082580.1 · 49,806–50,168 bp · −
atpE · NC_082580.1 · 52,142–52,543 bp · −
atpB · NC_082580.1 · 52,540–54,036 bp · −
psbJ · NC_082580.1 · 63,836–63,958 bp · −
psbL · NC_082580.1 · 64,093–64,209 bp · −
psbF · NC_082580.1 · 64,233–64,352 bp · −
psbE · NC_082580.1 · 64,367–64,618 bp · −
trnW-CCA · NC_082580.1 · 65,814–65,887 bp · −
trnP-UGG · NC_082580.1 · 66,056–66,129 bp · −
rpl20 · NC_082580.1 · 67,892–68,278 bp · −
rps12 · NC_082580.1 · 69,007–69,120 bp · −
rps12 · NC_082580.1 · 96,376–97,169 bp · −
clpP1 · NC_082580.1 · 69,239–71,170 bp · −
pbf1 · NC_082580.1 · 73,514–73,645 bp · −
rpoA · NC_082580.1 · 77,025–78,032 bp · −
rps11 · NC_082580.1 · 78,111–78,527 bp · −
rpl36 · NC_082580.1 · 78,637–78,750 bp · −
infA · NC_082580.1 · 78,846–79,079 bp · −
rps8 · NC_082580.1 · 79,206–79,610 bp · −
rpl14 · NC_082580.1 · 79,782–80,150 bp · −
rpl16 · NC_082580.1 · 80,283–81,511 bp · −
rps3 · NC_082580.1 · 81,661–82,317 bp · −
rpl22 · NC_082580.1 · 82,302–82,775 bp · −
rps19 · NC_082580.1 · 82,857–83,006 bp · −
rpl2 · NC_082580.1 · 83,203–84,681 bp · −
rpl23 · NC_082580.1 · 84,700–84,981 bp · −
trnI-CAU · NC_082580.1 · 85,147–85,220 bp · −
trnL-CAA · NC_082580.1 · 92,742–92,822 bp · −
ndhB · NC_082580.1 · 93,392–95,599 bp · −
rps7 · NC_082580.1 · 95,855–96,322 bp · −
trnN-GUU · NC_082580.1 · 107,309–107,380 bp · −
ccsA · NC_082580.1 · 121,700–122,671 bp · −
trnL-UAG · NC_082580.1 · 122,788–122,867 bp · −
rpl32 · NC_082580.1 · 123,628–123,798 bp · −
trnR-ACG · NC_082580.1 · 128,519–128,592 bp · −
rrn5 · NC_082580.1 · 128,836–128,956 bp · −
rrn4.5 · NC_082580.1 · 129,212–129,314 bp · −
rrn23 · NC_082580.1 · 129,413–132,223 bp · −
trnA-UGC · NC_082580.1 · 132,388–133,265 bp · −
trnI-GAU · NC_082580.1 · 133,330–134,347 bp · −
rrn16 · NC_082580.1 · 134,645–136,135 bp · −
trnV-GAC · NC_082580.1 · 136,356–136,427 bp · −
ycf15 · NC_082580.1 · 142,773–142,904 bp · −
ycf2 · NC_082580.1 · 143,112–149,939 bp · −
psbK · NC_082580.1 · 7,308–7,493 bp · +
psbI · NC_082580.1 · 7,880–7,990 bp · +
trnG-UCC · NC_082580.1 · 8,971–9,732 bp · +
trnR-UCU · NC_082580.1 · 9,924–9,995 bp · +
trnC-GCA · NC_082580.1 · 27,973–28,043 bp · +
petN · NC_082580.1 · 28,207–28,296 bp · +
trnT-GGU · NC_082580.1 · 30,965–31,036 bp · +
psbD · NC_082580.1 · 32,313–33,374 bp · +
psbC · NC_082580.1 · 33,358–34,743 bp · +
psbZ · NC_082580.1 · 35,402–35,590 bp · +
trnG-GCC · NC_082580.1 · 35,835–35,905 bp · +
trnS-GGA · NC_082580.1 · 44,762–44,848 bp · +
trnL-UAA · NC_082580.1 · 46,897–47,453 bp · +
trnF-GAA · NC_082580.1 · 47,736–47,808 bp · +
trnM-CAU · NC_082580.1 · 51,852–51,923 bp · +
rbcL · NC_082580.1 · 54,850–56,283 bp · +
accD · NC_082580.1 · 56,976–58,457 bp · +
psaI · NC_082580.1 · 59,186–59,296 bp · +
pafII · NC_082580.1 · 59,744–60,298 bp · +
cemA · NC_082580.1 · 60,950–61,639 bp · +
petA · NC_082580.1 · 61,854–62,816 bp · +
petL · NC_082580.1 · 65,315–65,410 bp · +
petG · NC_082580.1 · 65,578–65,691 bp · +
psaJ · NC_082580.1 · 66,413–66,547 bp · +
rpl33 · NC_082580.1 · 67,002–67,196 bp · +
rps18 · NC_082580.1 · 67,363–67,668 bp · +
rps12 · NC_082580.1 · 138,085–138,878 bp · +
psbB · NC_082580.1 · 71,628–73,154 bp · +
psbT · NC_082580.1 · 73,347–73,448 bp · +
psbH · NC_082580.1 · 73,751–73,969 bp · +
petB · NC_082580.1 · 74,112–75,476 bp · +
petD · NC_082580.1 · 75,665–76,848 bp · +
ycf2 · NC_082580.1 · 85,315–92,142 bp · +
ycf15 · NC_082580.1 · 92,350–92,481 bp · +
trnV-GAC · NC_082580.1 · 98,827–98,898 bp · +
rrn16 · NC_082580.1 · 99,119–100,609 bp · +
trnI-GAU · NC_082580.1 · 100,907–101,924 bp · +
trnA-UGC · NC_082580.1 · 101,989–102,866 bp · +
rrn23S · NC_082580.1 · 103,031–105,481 bp · +
rrn4.5 · NC_082580.1 · 105,940–106,042 bp · +
rrn5 · NC_082580.1 · 106,298–106,418 bp · +
trnR-ACG · NC_082580.1 · 106,662–106,735 bp · +
ycf1 · NC_082580.1 · 107,722–113,274 bp · +
rps15 · NC_082580.1 · 113,701–113,973 bp · +
ndhH · NC_082580.1 · 114,088–115,269 bp · +
ndhA · NC_082580.1 · 115,271–117,373 bp · +
ndhI · NC_082580.1 · 117,454–117,960 bp · +
ndhG · NC_082580.1 · 118,323–118,853 bp · +
ndhE · NC_082580.1 · 119,062–119,367 bp · +
psaC · NC_082580.1 · 119,622–119,867 bp · +
ndhD · NC_082580.1 · 119,985–121,487 bp · +
ndhF · NC_082580.1 · 124,277–126,508 bp · +
trnN-GUU · NC_082580.1 · 127,874–127,945 bp · +
rps7 · NC_082580.1 · 138,932–139,399 bp · +
ndhB · NC_082580.1 · 139,655–141,862 bp · +
trnL-CAA · NC_082580.1 · 142,432–142,512 bp · +
trnI-CAU · NC_082580.1 · 150,034–150,107 bp · +
rpl23 · NC_082580.1 · 150,273–150,554 bp · +
rpl2 · NC_082580.1 · 150,573–152,051 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Orthosiphon aristatus
ANNOTATED PLASTOME
NC_082580.1
152,155 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38039 76078 114116 152155 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23S rrn4.5 rrn5 trnR-ACG ycf1 rps15 ndhH ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ccsA trnL-UAG rpl32 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 13 85 73 Locate
psbA gene − 385 1443 1059 Locate
trnK-UUU gene − 1672 4250 2579 Locate
matK gene − 1991 3511 1521 Locate
rps16 gene − 4777 5910 1134 Locate
trnQ-UUG gene − 6851 6922 72 Locate
psbK gene + 7308 7493 186 Locate
psbI gene + 7880 7990 111 Locate
trnS-GCU gene − 8144 8231 88 Locate
trnG-UCC gene + 8971 9732 762 Locate
trnR-UCU gene + 9924 9995 72 Locate
atpA gene − 10100 11623 1524 Locate
atpF gene − 11725 12965 1241 Locate
atpH gene − 13239 13484 246 Locate
atpI gene − 14518 15261 744 Locate
rps2 gene − 15488 16198 711 Locate
rpoC2 gene − 16407 20564 4158 Locate
rpoC1 gene − 20741 23547 2807 Locate
rpoB gene − 23574 26786 3213 Locate
trnC-GCA gene + 27973 28043 71 Locate
petN gene + 28207 28296 90 Locate
psbM gene − 29306 29410 105 Locate
trnD-GUC gene − 29933 30006 74 Locate
trnY-GUA gene − 30124 30207 84 Locate
trnE-UUC gene − 30291 30363 73 Locate
trnT-GGU gene + 30965 31036 72 Locate
psbD gene + 32313 33374 1062 Locate
psbC gene + 33358 34743 1386 Locate
trnS-UGA gene − 34976 35068 93 Locate
psbZ gene + 35402 35590 189 Locate
trnG-GCC gene + 35835 35905 71 Locate
trnM-CAU gene − 36078 36151 74 Locate
rps14 gene − 36288 36590 303 Locate
psaB gene − 36713 38917 2205 Locate
psaA gene − 38943 41195 2253 Locate
pafI gene − 41971 43919 1949 Locate
trnS-GGA gene + 44762 44848 87 Locate
rps4 gene − 45133 45738 606 Locate
trnT-UGU gene − 46136 46208 73 Locate
trnL-UAA gene + 46897 47453 557 Locate
trnF-GAA gene + 47736 47808 73 Locate
ndhJ gene − 48491 48967 477 Locate
ndhK gene − 49078 49755 678 Locate
ndhC gene − 49806 50168 363 Locate
trnM-CAU gene + 51852 51923 72 Locate
atpE gene − 52142 52543 402 Locate
atpB gene − 52540 54036 1497 Locate
rbcL gene + 54850 56283 1434 Locate
accD gene + 56976 58457 1482 Locate
psaI gene + 59186 59296 111 Locate
pafII gene + 59744 60298 555 Locate
cemA gene + 60950 61639 690 Locate
petA gene + 61854 62816 963 Locate
psbJ gene − 63836 63958 123 Locate
psbL gene − 64093 64209 117 Locate
psbF gene − 64233 64352 120 Locate
psbE gene − 64367 64618 252 Locate
petL gene + 65315 65410 96 Locate
petG gene + 65578 65691 114 Locate
trnW-CCA gene − 65814 65887 74 Locate
trnP-UGG gene − 66056 66129 74 Locate
psaJ gene + 66413 66547 135 Locate
rpl33 gene + 67002 67196 195 Locate
rps18 gene + 67363 67668 306 Locate
rpl20 gene − 67892 68278 387 Locate
rps12 gene − 69007 69120 114 Locate
clpP1 gene − 69239 71170 1932 Locate
psbB gene + 71628 73154 1527 Locate
psbT gene + 73347 73448 102 Locate
pbf1 gene − 73514 73645 132 Locate
psbH gene + 73751 73969 219 Locate
petB gene + 74112 75476 1365 Locate
petD gene + 75665 76848 1184 Locate
rpoA gene − 77025 78032 1008 Locate
rps11 gene − 78111 78527 417 Locate
rpl36 gene − 78637 78750 114 Locate
infA gene − 78846 79079 234 Locate
rps8 gene − 79206 79610 405 Locate
rpl14 gene − 79782 80150 369 Locate
rpl16 gene − 80283 81511 1229 Locate
rps3 gene − 81661 82317 657 Locate
rpl22 gene − 82302 82775 474 Locate
rps19 gene − 82857 83006 150 Locate
rpl2 gene − 83203 84681 1479 Locate
rpl23 gene − 84700 84981 282 Locate
trnI-CAU gene − 85147 85220 74 Locate
ycf2 gene + 85315 92142 6828 Locate
ycf15 gene + 92350 92481 132 Locate
trnL-CAA gene − 92742 92822 81 Locate
ndhB gene − 93392 95599 2208 Locate
rps7 gene − 95855 96322 468 Locate
rps12 gene − 96376 97169 794 Locate
trnV-GAC gene + 98827 98898 72 Locate
rrn16 gene + 99119 100609 1491 Locate
trnI-GAU gene + 100907 101924 1018 Locate
trnA-UGC gene + 101989 102866 878 Locate
rrn23S gene + 103031 105481 2451 Locate
rrn4.5 gene + 105940 106042 103 Locate
rrn5 gene + 106298 106418 121 Locate
trnR-ACG gene + 106662 106735 74 Locate
trnN-GUU gene − 107309 107380 72 Locate
ycf1 gene + 107722 113274 5553 Locate
rps15 gene + 113701 113973 273 Locate
ndhH gene + 114088 115269 1182 Locate
ndhA gene + 115271 117373 2103 Locate
ndhI gene + 117454 117960 507 Locate
ndhG gene + 118323 118853 531 Locate
ndhE gene + 119062 119367 306 Locate
psaC gene + 119622 119867 246 Locate
ndhD gene + 119985 121487 1503 Locate
ccsA gene − 121700 122671 972 Locate
trnL-UAG gene − 122788 122867 80 Locate
rpl32 gene − 123628 123798 171 Locate
ndhF gene + 124277 126508 2232 Locate
trnN-GUU gene + 127874 127945 72 Locate
trnR-ACG gene − 128519 128592 74 Locate
rrn5 gene − 128836 128956 121 Locate
rrn4.5 gene − 129212 129314 103 Locate
rrn23 gene − 129413 132223 2811 Locate
trnA-UGC gene − 132388 133265 878 Locate
trnI-GAU gene − 133330 134347 1018 Locate
rrn16 gene − 134645 136135 1491 Locate
trnV-GAC gene − 136356 136427 72 Locate
rps12 gene + 138085 138878 794 Locate
rps7 gene + 138932 139399 468 Locate
ndhB gene + 139655 141862 2208 Locate
trnL-CAA gene + 142432 142512 81 Locate
ycf15 gene − 142773 142904 132 Locate
ycf2 gene − 143112 149939 6828 Locate
trnI-CAU gene + 150034 150107 74 Locate
rpl23 gene + 150273 150554 282 Locate
rpl2 gene + 150573 152051 1479 Locate
Status Available
Accession NC_082580.1
Length 152,155 bp
GC content 37.9%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 14 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources