Paraphlomis hispida chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ231107.1 · 2–75 bp · −
psbA · PQ231107.1 · 307–1,365 bp · −
trnK-UUU · PQ231107.1 · 1,598–4,189 bp · −
matK · PQ231107.1 · 1,905–3,440 bp · −
rps16 · PQ231107.1 · 5,100–6,240 bp · −
trnQ-UUG · PQ231107.1 · 7,185–7,256 bp · −
trnS-GGA · PQ231107.1 · 8,389–8,476 bp · −
atpA · PQ231107.1 · 10,274–11,797 bp · −
atpF · PQ231107.1 · 11,885–13,106 bp · −
atpH · PQ231107.1 · 13,477–13,722 bp · −
atpI · PQ231107.1 · 14,722–15,465 bp · −
rps2 · PQ231107.1 · 15,696–16,406 bp · −
rpoC2 · PQ231107.1 · 16,706–20,815 bp · −
rpoC1 · PQ231107.1 · 20,970–23,800 bp · −
rpoB · PQ231107.1 · 23,827–27,039 bp · −
psbM · PQ231107.1 · 29,930–30,034 bp · −
trnD-GUC · PQ231107.1 · 30,558–30,631 bp · −
trnY-GUA · PQ231107.1 · 30,746–30,829 bp · −
trnE-UUC · PQ231107.1 · 30,889–30,961 bp · −
trnT-CGU · PQ231107.1 · 31,532–31,603 bp · −
trnS-UGA · PQ231107.1 · 35,515–35,607 bp · −
trnfM-CAU · PQ231107.1 · 36,570–36,643 bp · −
rps14 · PQ231107.1 · 36,793–37,095 bp · −
psaB · PQ231107.1 · 37,223–39,427 bp · −
psaA · PQ231107.1 · 39,453–41,705 bp · −
ycf3 · PQ231107.1 · 42,433–44,388 bp · −
rps4 · PQ231107.1 · 45,103–45,708 bp · −
trnT-UGU · PQ231107.1 · 46,099–46,171 bp · −
ndhJ · PQ231107.1 · 48,449–48,943 bp · −
ndhK · PQ231107.1 · 49,026–49,703 bp · −
ndhC · PQ231107.1 · 49,757–50,119 bp · −
trnV-UAC · PQ231107.1 · 51,086–51,732 bp · −
atpE · PQ231107.1 · 52,211–52,612 bp · −
atpB · PQ231107.1 · 52,609–54,105 bp · −
psbJ · PQ231107.1 · 63,787–63,909 bp · −
psbL · PQ231107.1 · 64,047–64,163 bp · −
psbF · PQ231107.1 · 64,187–64,306 bp · −
psbE · PQ231107.1 · 64,321–64,572 bp · −
trnW-CCA · PQ231107.1 · 66,009–66,082 bp · −
trnP-UGG · PQ231107.1 · 66,252–66,325 bp · −
rpl20 · PQ231107.1 · 68,039–68,425 bp · −
rps12 · PQ231107.1 · 69,192–69,305 bp · −
rps12 · PQ231107.1 · 96,553–97,346 bp · −
clpP · PQ231107.1 · 69,432–71,298 bp · −
psbN · PQ231107.1 · 73,625–73,756 bp · −
rpoA · PQ231107.1 · 77,164–78,177 bp · −
rps11 · PQ231107.1 · 78,249–78,680 bp · −
rpl36 · PQ231107.1 · 78,768–78,881 bp · −
infA · PQ231107.1 · 78,977–79,210 bp · −
rps8 · PQ231107.1 · 79,335–79,748 bp · −
rpl14 · PQ231107.1 · 79,939–80,307 bp · −
rpl16 · PQ231107.1 · 80,434–81,740 bp · −
rps3 · PQ231107.1 · 81,887–82,549 bp · −
rpl22 · PQ231107.1 · 82,534–82,998 bp · −
rps19 · PQ231107.1 · 83,058–83,336 bp · −
rpl2 · PQ231107.1 · 83,389–84,880 bp · −
rpl23 · PQ231107.1 · 84,899–85,180 bp · −
trnI-CAU · PQ231107.1 · 85,346–85,419 bp · −
trnL-CAA · PQ231107.1 · 92,926–93,006 bp · −
ndhB · PQ231107.1 · 93,546–95,757 bp · −
rps7 · PQ231107.1 · 96,032–96,499 bp · −
trnN-GUU · PQ231107.1 · 107,447–107,518 bp · −
ndhF · PQ231107.1 · 108,908–111,130 bp · −
ndhD · PQ231107.1 · 113,853–115,373 bp · −
psaC · PQ231107.1 · 115,472–115,717 bp · −
ndhE · PQ231107.1 · 115,980–116,285 bp · −
ndhG · PQ231107.1 · 116,507–117,037 bp · −
ndhI · PQ231107.1 · 117,416–117,913 bp · −
ndhA · PQ231107.1 · 118,000–120,159 bp · −
ndhH · PQ231107.1 · 120,161–121,342 bp · −
rps15 · PQ231107.1 · 121,443–121,715 bp · −
ycf1 · PQ231107.1 · 122,096–127,648 bp · −
trnR-ACG · PQ231107.1 · 128,612–128,690 bp · −
rrn5 · PQ231107.1 · 128,920–129,040 bp · −
rrn4.5 · PQ231107.1 · 129,296–129,398 bp · −
rrn23 · PQ231107.1 · 129,497–132,307 bp · −
trnA-UGC · PQ231107.1 · 132,499–133,377 bp · −
trnI-GAU · PQ231107.1 · 133,442–134,450 bp · −
rrn16 · PQ231107.1 · 134,740–136,230 bp · −
trnV-GAC · PQ231107.1 · 136,458–136,529 bp · −
ycf15 · PQ231107.1 · 142,827–143,075 bp · −
ycf2 · PQ231107.1 · 143,118–149,984 bp · −
psbK · PQ231107.1 · 7,593–7,778 bp · +
psbI · PQ231107.1 · 8,155–8,265 bp · +
trnG-UCC · PQ231107.1 · 9,170–9,929 bp · +
trnR-UCU · PQ231107.1 · 10,103–10,177 bp · +
trnC-GCA · PQ231107.1 · 28,141–28,216 bp · +
petN · PQ231107.1 · 29,053–29,142 bp · +
psbD · PQ231107.1 · 32,854–33,915 bp · +
psbC · PQ231107.1 · 33,863–35,284 bp · +
psbZ · PQ231107.1 · 35,932–36,120 bp · +
trnG-GCC · PQ231107.1 · 36,350–36,420 bp · +
trnS-GGA · PQ231107.1 · 44,718–44,804 bp · +
trnL-UAA · PQ231107.1 · 46,849–47,422 bp · +
trnF-GAA · PQ231107.1 · 47,714–47,786 bp · +
trnM-CAU · PQ231107.1 · 51,921–51,993 bp · +
rbcL · PQ231107.1 · 54,888–56,363 bp · +
accD · PQ231107.1 · 57,053–58,519 bp · +
psaI · PQ231107.1 · 59,206–59,316 bp · +
ycf4 · PQ231107.1 · 59,752–60,306 bp · +
cemA · PQ231107.1 · 60,874–61,563 bp · +
petA · PQ231107.1 · 61,780–62,742 bp · +
petL · PQ231107.1 · 65,500–65,595 bp · +
petG · PQ231107.1 · 65,770–65,883 bp · +
psaJ · PQ231107.1 · 66,600–66,734 bp · +
rpl33 · PQ231107.1 · 67,207–67,407 bp · +
rps18 · PQ231107.1 · 67,554–67,859 bp · +
rps12 · PQ231107.1 · 138,146–138,939 bp · +
psbB · PQ231107.1 · 71,736–73,262 bp · +
psbT · PQ231107.1 · 73,457–73,564 bp · +
psbH · PQ231107.1 · 73,860–74,081 bp · +
petB · PQ231107.1 · 74,206–75,585 bp · +
petD · PQ231107.1 · 75,780–77,001 bp · +
ycf2 · PQ231107.1 · 85,508–92,374 bp · +
ycf15 · PQ231107.1 · 92,417–92,665 bp · +
trnV-GAC · PQ231107.1 · 98,963–99,034 bp · +
rrn16 · PQ231107.1 · 99,262–100,752 bp · +
trnI-GAU · PQ231107.1 · 101,042–102,050 bp · +
trnA-UGC · PQ231107.1 · 102,115–102,993 bp · +
rrn23 · PQ231107.1 · 103,185–105,995 bp · +
rrn4.5 · PQ231107.1 · 106,094–106,196 bp · +
rrn5 · PQ231107.1 · 106,452–106,572 bp · +
trnR-ACG · PQ231107.1 · 106,802–106,880 bp · +
rpl32 · PQ231107.1 · 111,635–111,811 bp · +
trnL-UAG · PQ231107.1 · 112,535–112,614 bp · +
ccsA · PQ231107.1 · 112,699–113,670 bp · +
trnN-GUU · PQ231107.1 · 127,974–128,045 bp · +
rps7 · PQ231107.1 · 138,993–139,460 bp · +
ndhB · PQ231107.1 · 139,735–141,946 bp · +
trnL-CAA · PQ231107.1 · 142,486–142,566 bp · +
trnI-CAU · PQ231107.1 · 150,073–150,146 bp · +
rpl23 · PQ231107.1 · 150,312–150,593 bp · +
rpl2 · PQ231107.1 · 150,612–152,103 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Paraphlomis hispida
ANNOTATED PLASTOME
PQ231107.1
152,197 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38049 76098 114148 152197 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GGA atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-CGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4189 2592 Locate
matK gene − 1905 3440 1536 Locate
rps16 gene − 5100 6240 1141 Locate
trnQ-UUG gene − 7185 7256 72 Locate
psbK gene + 7593 7778 186 Locate
psbI gene + 8155 8265 111 Locate
trnS-GGA gene − 8389 8476 88 Locate
trnG-UCC gene + 9170 9929 760 Locate
trnR-UCU gene + 10103 10177 75 Locate
atpA gene − 10274 11797 1524 Locate
atpF gene − 11885 13106 1222 Locate
atpH gene − 13477 13722 246 Locate
atpI gene − 14722 15465 744 Locate
rps2 gene − 15696 16406 711 Locate
rpoC2 gene − 16706 20815 4110 Locate
rpoC1 gene − 20970 23800 2831 Locate
rpoB gene − 23827 27039 3213 Locate
trnC-GCA gene + 28141 28216 76 Locate
petN gene + 29053 29142 90 Locate
psbM gene − 29930 30034 105 Locate
trnD-GUC gene − 30558 30631 74 Locate
trnY-GUA gene − 30746 30829 84 Locate
trnE-UUC gene − 30889 30961 73 Locate
trnT-CGU gene − 31532 31603 72 Locate
psbD gene + 32854 33915 1062 Locate
psbC gene + 33863 35284 1422 Locate
trnS-UGA gene − 35515 35607 93 Locate
psbZ gene + 35932 36120 189 Locate
trnG-GCC gene + 36350 36420 71 Locate
trnfM-CAU gene − 36570 36643 74 Locate
rps14 gene − 36793 37095 303 Locate
psaB gene − 37223 39427 2205 Locate
psaA gene − 39453 41705 2253 Locate
ycf3 gene − 42433 44388 1956 Locate
trnS-GGA gene + 44718 44804 87 Locate
rps4 gene − 45103 45708 606 Locate
trnT-UGU gene − 46099 46171 73 Locate
trnL-UAA gene + 46849 47422 574 Locate
trnF-GAA gene + 47714 47786 73 Locate
ndhJ gene − 48449 48943 495 Locate
ndhK gene − 49026 49703 678 Locate
ndhC gene − 49757 50119 363 Locate
trnV-UAC gene − 51086 51732 647 Locate
trnM-CAU gene + 51921 51993 73 Locate
atpE gene − 52211 52612 402 Locate
atpB gene − 52609 54105 1497 Locate
rbcL gene + 54888 56363 1476 Locate
accD gene + 57053 58519 1467 Locate
psaI gene + 59206 59316 111 Locate
ycf4 gene + 59752 60306 555 Locate
cemA gene + 60874 61563 690 Locate
petA gene + 61780 62742 963 Locate
psbJ gene − 63787 63909 123 Locate
psbL gene − 64047 64163 117 Locate
psbF gene − 64187 64306 120 Locate
psbE gene − 64321 64572 252 Locate
petL gene + 65500 65595 96 Locate
petG gene + 65770 65883 114 Locate
trnW-CCA gene − 66009 66082 74 Locate
trnP-UGG gene − 66252 66325 74 Locate
psaJ gene + 66600 66734 135 Locate
rpl33 gene + 67207 67407 201 Locate
rps18 gene + 67554 67859 306 Locate
rpl20 gene − 68039 68425 387 Locate
rps12 gene − 69192 69305 114 Locate
clpP gene − 69432 71298 1867 Locate
psbB gene + 71736 73262 1527 Locate
psbT gene + 73457 73564 108 Locate
psbN gene − 73625 73756 132 Locate
psbH gene + 73860 74081 222 Locate
petB gene + 74206 75585 1380 Locate
petD gene + 75780 77001 1222 Locate
rpoA gene − 77164 78177 1014 Locate
rps11 gene − 78249 78680 432 Locate
rpl36 gene − 78768 78881 114 Locate
infA gene − 78977 79210 234 Locate
rps8 gene − 79335 79748 414 Locate
rpl14 gene − 79939 80307 369 Locate
rpl16 gene − 80434 81740 1307 Locate
rps3 gene − 81887 82549 663 Locate
rpl22 gene − 82534 82998 465 Locate
rps19 gene − 83058 83336 279 Locate
rpl2 gene − 83389 84880 1492 Locate
rpl23 gene − 84899 85180 282 Locate
trnI-CAU gene − 85346 85419 74 Locate
ycf2 gene + 85508 92374 6867 Locate
ycf15 gene + 92417 92665 249 Locate
trnL-CAA gene − 92926 93006 81 Locate
ndhB gene − 93546 95757 2212 Locate
rps7 gene − 96032 96499 468 Locate
rps12 gene − 96553 97346 794 Locate
trnV-GAC gene + 98963 99034 72 Locate
rrn16 gene + 99262 100752 1491 Locate
trnI-GAU gene + 101042 102050 1009 Locate
trnA-UGC gene + 102115 102993 879 Locate
rrn23 gene + 103185 105995 2811 Locate
rrn4.5 gene + 106094 106196 103 Locate
rrn5 gene + 106452 106572 121 Locate
trnR-ACG gene + 106802 106880 79 Locate
trnN-GUU gene − 107447 107518 72 Locate
ndhF gene − 108908 111130 2223 Locate
rpl32 gene + 111635 111811 177 Locate
trnL-UAG gene + 112535 112614 80 Locate
ccsA gene + 112699 113670 972 Locate
ndhD gene − 113853 115373 1521 Locate
psaC gene − 115472 115717 246 Locate
ndhE gene − 115980 116285 306 Locate
ndhG gene − 116507 117037 531 Locate
ndhI gene − 117416 117913 498 Locate
ndhA gene − 118000 120159 2160 Locate
ndhH gene − 120161 121342 1182 Locate
rps15 gene − 121443 121715 273 Locate
ycf1 gene − 122096 127648 5553 Locate
trnN-GUU gene + 127974 128045 72 Locate
trnR-ACG gene − 128612 128690 79 Locate
rrn5 gene − 128920 129040 121 Locate
rrn4.5 gene − 129296 129398 103 Locate
rrn23 gene − 129497 132307 2811 Locate
trnA-UGC gene − 132499 133377 879 Locate
trnI-GAU gene − 133442 134450 1009 Locate
rrn16 gene − 134740 136230 1491 Locate
trnV-GAC gene − 136458 136529 72 Locate
rps12 gene + 138146 138939 794 Locate
rps7 gene + 138993 139460 468 Locate
ndhB gene + 139735 141946 2212 Locate
trnL-CAA gene + 142486 142566 81 Locate
ycf15 gene − 142827 143075 249 Locate
ycf2 gene − 143118 149984 6867 Locate
trnI-CAU gene + 150073 150146 74 Locate
rpl23 gene + 150312 150593 282 Locate
rpl2 gene + 150612 152103 1492 Locate
Status Available
Accession PQ231107.1
Length 152,197 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources