Phlomoides hamosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_061415.1 · 2–76 bp · −
psbA · NC_061415.1 · 305–1,363 bp · −
trnK-UUU · NC_061415.1 · 1,596–4,179 bp · −
matK · NC_061415.1 · 1,900–3,435 bp · −
rps16 · NC_061415.1 · 5,114–6,271 bp · −
trnQ-UUG · NC_061415.1 · 7,262–7,333 bp · −
trnS-GCU · NC_061415.1 · 8,458–8,545 bp · −
atpA · NC_061415.1 · 10,204–11,727 bp · −
atpF · NC_061415.1 · 11,816–13,029 bp · −
atpH · NC_061415.1 · 13,400–13,645 bp · −
atpI · NC_061415.1 · 14,635–15,378 bp · −
rps2 · NC_061415.1 · 15,608–16,318 bp · −
rpoC2 · NC_061415.1 · 16,538–20,716 bp · −
rpoC1 · NC_061415.1 · 20,883–23,718 bp · −
rpoB · NC_061415.1 · 23,745–26,957 bp · −
psbM · NC_061415.1 · 29,803–29,907 bp · −
trnD-GUC · NC_061415.1 · 30,449–30,522 bp · −
trnY-GUA · NC_061415.1 · 30,634–30,717 bp · −
trnE-UUC · NC_061415.1 · 30,777–30,849 bp · −
trnS-UGA · NC_061415.1 · 35,394–35,486 bp · −
trnfM-CAU · NC_061415.1 · 36,450–36,523 bp · −
rps14 · NC_061415.1 · 36,673–36,975 bp · −
psaB · NC_061415.1 · 37,105–39,309 bp · −
psaA · NC_061415.1 · 39,335–41,587 bp · −
pafI · NC_061415.1 · 42,322–44,265 bp · −
rps4 · NC_061415.1 · 44,976–45,581 bp · −
trnT-UGU · NC_061415.1 · 45,983–46,055 bp · −
ndhJ · NC_061415.1 · 48,351–48,827 bp · −
ndhK · NC_061415.1 · 48,928–49,605 bp · −
ndhC · NC_061415.1 · 49,658–50,020 bp · −
trnV-UAC · NC_061415.1 · 50,975–51,627 bp · −
atpE · NC_061415.1 · 52,075–52,476 bp · −
atpB · NC_061415.1 · 52,473–53,969 bp · −
psbJ · NC_061415.1 · 63,670–63,792 bp · −
psbL · NC_061415.1 · 63,930–64,046 bp · −
psbF · NC_061415.1 · 64,070–64,189 bp · −
psbE · NC_061415.1 · 64,204–64,455 bp · −
trnW-CCA · NC_061415.1 · 65,891–65,964 bp · −
trnP-UGG · NC_061415.1 · 66,126–66,199 bp · −
rpl20 · NC_061415.1 · 67,950–68,336 bp · −
rps12 · NC_061415.1 · 69,095–69,208 bp · −
rps12 · NC_061415.1 · 96,447–97,240 bp · −
clpP1 · NC_061415.1 · 69,335–71,203 bp · −
pbf1 · NC_061415.1 · 73,547–73,678 bp · −
rpoA · NC_061415.1 · 77,090–78,103 bp · −
rps11 · NC_061415.1 · 78,175–78,591 bp · −
rpl36 · NC_061415.1 · 78,694–78,807 bp · −
infA · NC_061415.1 · 78,912–79,145 bp · −
rps8 · NC_061415.1 · 79,269–79,682 bp · −
rpl14 · NC_061415.1 · 79,854–80,222 bp · −
rpl16 · NC_061415.1 · 80,349–81,653 bp · −
rps3 · NC_061415.1 · 81,809–82,471 bp · −
rpl22 · NC_061415.1 · 82,456–82,920 bp · −
rps19 · NC_061415.1 · 82,980–83,258 bp · −
rpl2 · NC_061415.1 · 83,311–84,802 bp · −
rpl23 · NC_061415.1 · 84,401–85,102 bp · −
trnI-CAU · NC_061415.1 · 85,268–85,341 bp · −
trnL-CAA · NC_061415.1 · 92,827–92,907 bp · −
ndhB · NC_061415.1 · 93,452–95,663 bp · −
rps7 · NC_061415.1 · 95,926–96,393 bp · −
trnN-GUU · NC_061415.1 · 107,341–107,412 bp · −
ndhF · NC_061415.1 · 108,802–111,024 bp · −
ndhD · NC_061415.1 · 113,480–114,982 bp · −
psaC · NC_061415.1 · 115,104–115,349 bp · −
ndhE · NC_061415.1 · 115,612–115,917 bp · −
ndhG · NC_061415.1 · 116,133–116,663 bp · −
ndhI · NC_061415.1 · 117,032–117,538 bp · −
ndhA · NC_061415.1 · 117,625–119,790 bp · −
ndhH · NC_061415.1 · 119,792–120,973 bp · −
rps15 · NC_061415.1 · 121,074–121,346 bp · −
ycf1 · NC_061415.1 · 121,728–127,217 bp · −
trnR-ACG · NC_061415.1 · 128,187–128,260 bp · −
rrn5 · NC_061415.1 · 128,495–128,615 bp · −
rrn4.5 · NC_061415.1 · 128,871–128,973 bp · −
rrn23 · NC_061415.1 · 129,072–131,882 bp · −
trnA-UGC · NC_061415.1 · 132,075–132,953 bp · −
trnI-GAU · NC_061415.1 · 133,018–134,020 bp · −
rrn16 · NC_061415.1 · 134,310–135,800 bp · −
trnV-GAC · NC_061415.1 · 136,028–136,099 bp · −
ycf15 · NC_061415.1 · 142,389–142,637 bp · −
ycf2 · NC_061415.1 · 142,680–149,525 bp · −
psbK · NC_061415.1 · 7,670–7,855 bp · +
psbI · NC_061415.1 · 8,223–8,333 bp · +
trnG-UCC · NC_061415.1 · 9,107–9,857 bp · +
trnR-UCU · NC_061415.1 · 10,036–10,107 bp · +
trnC-GCA · NC_061415.1 · 28,018–28,088 bp · +
petN · NC_061415.1 · 28,930–29,019 bp · +
trnT-GGU · NC_061415.1 · 31,413–31,484 bp · +
psbD · NC_061415.1 · 32,732–33,793 bp · +
psbC · NC_061415.1 · 33,777–35,162 bp · +
psbZ · NC_061415.1 · 35,813–36,001 bp · +
trnG-GCC · NC_061415.1 · 36,231–36,301 bp · +
trnS-GGA · NC_061415.1 · 44,596–44,682 bp · +
trnL-UAA · NC_061415.1 · 46,742–47,307 bp · +
trnF-GAA · NC_061415.1 · 47,599–47,671 bp · +
trnM-CAU · NC_061415.1 · 51,816–51,888 bp · +
rbcL · NC_061415.1 · 54,783–56,228 bp · +
accD · NC_061415.1 · 56,918–58,384 bp · +
psaI · NC_061415.1 · 59,086–59,196 bp · +
pafII · NC_061415.1 · 59,621–60,175 bp · +
cemA · NC_061415.1 · 60,744–61,433 bp · +
petA · NC_061415.1 · 61,650–62,612 bp · +
petL · NC_061415.1 · 65,382–65,477 bp · +
petG · NC_061415.1 · 65,652–65,765 bp · +
psaJ · NC_061415.1 · 66,474–66,608 bp · +
rpl33 · NC_061415.1 · 67,080–67,280 bp · +
rps18 · NC_061415.1 · 67,428–67,733 bp · +
rps12 · NC_061415.1 · 137,715–138,508 bp · +
psbB · NC_061415.1 · 71,643–73,169 bp · +
psbT · NC_061415.1 · 73,360–73,461 bp · +
psbH · NC_061415.1 · 73,782–74,003 bp · +
petB · NC_061415.1 · 74,128–75,512 bp · +
petD · NC_061415.1 · 75,707–76,920 bp · +
ycf2 · NC_061415.1 · 85,430–92,275 bp · +
ycf15 · NC_061415.1 · 92,318–92,566 bp · +
trnV-GAC · NC_061415.1 · 98,856–98,927 bp · +
rrn16 · NC_061415.1 · 99,155–100,645 bp · +
trnI-GAU · NC_061415.1 · 100,935–101,937 bp · +
trnA-UGC · NC_061415.1 · 102,002–102,880 bp · +
rrn23 · NC_061415.1 · 103,073–105,883 bp · +
rrn4.5 · NC_061415.1 · 105,982–106,084 bp · +
rrn5 · NC_061415.1 · 106,340–106,460 bp · +
trnR-ACG · NC_061415.1 · 106,695–106,768 bp · +
ycf1 · NC_061415.1 · 107,738–108,856 bp · +
rpl32 · NC_061415.1 · 111,445–111,621 bp · +
trnL-UAG · NC_061415.1 · 112,164–112,243 bp · +
ccsA · NC_061415.1 · 112,328–113,299 bp · +
trnN-GUU · NC_061415.1 · 127,543–127,614 bp · +
rps7 · NC_061415.1 · 138,562–139,029 bp · +
ndhB · NC_061415.1 · 139,292–141,503 bp · +
trnL-CAA · NC_061415.1 · 142,048–142,128 bp · +
trnM-CAU · NC_061415.1 · 149,614–149,687 bp · +
rpl23 · NC_061415.1 · 149,853–150,554 bp · +
rpl2 · NC_061415.1 · 150,153–151,644 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides hamosa
ANNOTATED PLASTOME
NC_061415.1
151,738 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37934 75869 113804 151738 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 305 1363 1059 Locate
trnK-UUU gene − 1596 4179 2584 Locate
matK gene − 1900 3435 1536 Locate
rps16 gene − 5114 6271 1158 Locate
trnQ-UUG gene − 7262 7333 72 Locate
psbK gene + 7670 7855 186 Locate
psbI gene + 8223 8333 111 Locate
trnS-GCU gene − 8458 8545 88 Locate
trnG-UCC gene + 9107 9857 751 Locate
trnR-UCU gene + 10036 10107 72 Locate
atpA gene − 10204 11727 1524 Locate
atpF gene − 11816 13029 1214 Locate
atpH gene − 13400 13645 246 Locate
atpI gene − 14635 15378 744 Locate
rps2 gene − 15608 16318 711 Locate
rpoC2 gene − 16538 20716 4179 Locate
rpoC1 gene − 20883 23718 2836 Locate
rpoB gene − 23745 26957 3213 Locate
trnC-GCA gene + 28018 28088 71 Locate
petN gene + 28930 29019 90 Locate
psbM gene − 29803 29907 105 Locate
trnD-GUC gene − 30449 30522 74 Locate
trnY-GUA gene − 30634 30717 84 Locate
trnE-UUC gene − 30777 30849 73 Locate
trnT-GGU gene + 31413 31484 72 Locate
psbD gene + 32732 33793 1062 Locate
psbC gene + 33777 35162 1386 Locate
trnS-UGA gene − 35394 35486 93 Locate
psbZ gene + 35813 36001 189 Locate
trnG-GCC gene + 36231 36301 71 Locate
trnfM-CAU gene − 36450 36523 74 Locate
rps14 gene − 36673 36975 303 Locate
psaB gene − 37105 39309 2205 Locate
psaA gene − 39335 41587 2253 Locate
pafI gene − 42322 44265 1944 Locate
trnS-GGA gene + 44596 44682 87 Locate
rps4 gene − 44976 45581 606 Locate
trnT-UGU gene − 45983 46055 73 Locate
trnL-UAA gene + 46742 47307 566 Locate
trnF-GAA gene + 47599 47671 73 Locate
ndhJ gene − 48351 48827 477 Locate
ndhK gene − 48928 49605 678 Locate
ndhC gene − 49658 50020 363 Locate
trnV-UAC gene − 50975 51627 653 Locate
trnM-CAU gene + 51816 51888 73 Locate
atpE gene − 52075 52476 402 Locate
atpB gene − 52473 53969 1497 Locate
rbcL gene + 54783 56228 1446 Locate
accD gene + 56918 58384 1467 Locate
psaI gene + 59086 59196 111 Locate
pafII gene + 59621 60175 555 Locate
cemA gene + 60744 61433 690 Locate
petA gene + 61650 62612 963 Locate
psbJ gene − 63670 63792 123 Locate
psbL gene − 63930 64046 117 Locate
psbF gene − 64070 64189 120 Locate
psbE gene − 64204 64455 252 Locate
petL gene + 65382 65477 96 Locate
petG gene + 65652 65765 114 Locate
trnW-CCA gene − 65891 65964 74 Locate
trnP-UGG gene − 66126 66199 74 Locate
psaJ gene + 66474 66608 135 Locate
rpl33 gene + 67080 67280 201 Locate
rps18 gene + 67428 67733 306 Locate
rpl20 gene − 67950 68336 387 Locate
rps12 gene − 69095 69208 114 Locate
clpP1 gene − 69335 71203 1869 Locate
psbB gene + 71643 73169 1527 Locate
psbT gene + 73360 73461 102 Locate
pbf1 gene − 73547 73678 132 Locate
psbH gene + 73782 74003 222 Locate
petB gene + 74128 75512 1385 Locate
petD gene + 75707 76920 1214 Locate
rpoA gene − 77090 78103 1014 Locate
rps11 gene − 78175 78591 417 Locate
rpl36 gene − 78694 78807 114 Locate
infA gene − 78912 79145 234 Locate
rps8 gene − 79269 79682 414 Locate
rpl14 gene − 79854 80222 369 Locate
rpl16 gene − 80349 81653 1305 Locate
rps3 gene − 81809 82471 663 Locate
rpl22 gene − 82456 82920 465 Locate
rps19 gene − 82980 83258 279 Locate
rpl2 gene − 83311 84802 1492 Locate
rpl23 gene − 84401 85102 702 Locate
trnI-CAU gene − 85268 85341 74 Locate
ycf2 gene + 85430 92275 6846 Locate
ycf15 gene + 92318 92566 249 Locate
trnL-CAA gene − 92827 92907 81 Locate
ndhB gene − 93452 95663 2212 Locate
rps7 gene − 95926 96393 468 Locate
rps12 gene − 96447 97240 794 Locate
trnV-GAC gene + 98856 98927 72 Locate
rrn16 gene + 99155 100645 1491 Locate
trnI-GAU gene + 100935 101937 1003 Locate
trnA-UGC gene + 102002 102880 879 Locate
rrn23 gene + 103073 105883 2811 Locate
rrn4.5 gene + 105982 106084 103 Locate
rrn5 gene + 106340 106460 121 Locate
trnR-ACG gene + 106695 106768 74 Locate
trnN-GUU gene − 107341 107412 72 Locate
ycf1 gene + 107738 108856 1119 Locate
ndhF gene − 108802 111024 2223 Locate
rpl32 gene + 111445 111621 177 Locate
trnL-UAG gene + 112164 112243 80 Locate
ccsA gene + 112328 113299 972 Locate
ndhD gene − 113480 114982 1503 Locate
psaC gene − 115104 115349 246 Locate
ndhE gene − 115612 115917 306 Locate
ndhG gene − 116133 116663 531 Locate
ndhI gene − 117032 117538 507 Locate
ndhA gene − 117625 119790 2166 Locate
ndhH gene − 119792 120973 1182 Locate
rps15 gene − 121074 121346 273 Locate
ycf1 gene − 121728 127217 5490 Locate
trnN-GUU gene + 127543 127614 72 Locate
trnR-ACG gene − 128187 128260 74 Locate
rrn5 gene − 128495 128615 121 Locate
rrn4.5 gene − 128871 128973 103 Locate
rrn23 gene − 129072 131882 2811 Locate
trnA-UGC gene − 132075 132953 879 Locate
trnI-GAU gene − 133018 134020 1003 Locate
rrn16 gene − 134310 135800 1491 Locate
trnV-GAC gene − 136028 136099 72 Locate
rps12 gene + 137715 138508 794 Locate
rps7 gene + 138562 139029 468 Locate
ndhB gene + 139292 141503 2212 Locate
trnL-CAA gene + 142048 142128 81 Locate
ycf15 gene − 142389 142637 249 Locate
ycf2 gene − 142680 149525 6846 Locate
trnM-CAU gene + 149614 149687 74 Locate
rpl23 gene + 149853 150554 702 Locate
rpl2 gene + 150153 151644 1492 Locate
Status Available
Accession NC_061415.1
Length 151,738 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources