Phlomoides isochila chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PX921649.1 · 2–76 bp · −
psbA · PX921649.1 · 322–1,380 bp · −
trnK-UUU · PX921649.1 · 1,613–4,201 bp · −
matK · PX921649.1 · 1,918–3,453 bp · −
rps16 · PX921649.1 · 5,126–6,265 bp · −
trnQ-UUG · PX921649.1 · 7,259–7,331 bp · −
trnS-GCU · PX921649.1 · 8,458–8,545 bp · −
atpA · PX921649.1 · 10,215–11,738 bp · −
atpF · PX921649.1 · 11,826–13,081 bp · −
atpH · PX921649.1 · 13,447–13,692 bp · −
atpI · PX921649.1 · 14,683–15,426 bp · −
rps2 · PX921649.1 · 15,657–16,367 bp · −
rpoC2 · PX921649.1 · 16,587–20,762 bp · −
rpoC1 · PX921649.1 · 20,929–23,775 bp · −
rpoB · PX921649.1 · 23,802–27,014 bp · −
psbM · PX921649.1 · 29,906–30,010 bp · −
trnD-GUC · PX921649.1 · 30,547–30,620 bp · −
trnY-GUA · PX921649.1 · 30,734–30,817 bp · −
trnE-UUC · PX921649.1 · 30,877–30,949 bp · −
trnS-UGA · PX921649.1 · 35,512–35,604 bp · −
trnfM-CAU · PX921649.1 · 36,570–36,643 bp · −
rps14 · PX921649.1 · 36,793–37,095 bp · −
psaB · PX921649.1 · 37,223–39,427 bp · −
psaA · PX921649.1 · 39,453–41,705 bp · −
pafI · PX921649.1 · 42,438–44,373 bp · −
rps4 · PX921649.1 · 45,061–45,666 bp · −
trnT-UGU · PX921649.1 · 46,061–46,133 bp · −
ndhJ · PX921649.1 · 48,408–48,884 bp · −
ndhK · PX921649.1 · 48,990–49,667 bp · −
ndhK · PX921649.1 · 48,990–49,730 bp · −
ndhC · PX921649.1 · 49,721–50,083 bp · −
trnV-UAC · PX921649.1 · 51,039–51,686 bp · −
atpE · PX921649.1 · 52,170–52,571 bp · −
atpB · PX921649.1 · 52,568–54,064 bp · −
psbJ · PX921649.1 · 63,716–63,838 bp · −
psbL · PX921649.1 · 63,976–64,092 bp · −
psbF · PX921649.1 · 64,116–64,235 bp · −
psbE · PX921649.1 · 64,250–64,501 bp · −
trnW-CCA · PX921649.1 · 65,642–65,715 bp · −
trnP-UGG · PX921649.1 · 65,878–65,951 bp · −
rpl20 · PX921649.1 · 67,696–68,082 bp · −
rps12 · PX921649.1 · 68,844–68,957 bp · −
rps12 · PX921649.1 · 96,162–96,955 bp · −
clpP1 · PX921649.1 · 69,084–70,959 bp · −
psbN · PX921649.1 · 73,283–73,414 bp · −
rpoA · PX921649.1 · 76,815–77,828 bp · −
rps11 · PX921649.1 · 77,900–78,316 bp · −
rpl36 · PX921649.1 · 78,419–78,532 bp · −
infA · PX921649.1 · 78,628–78,861 bp · −
rps8 · PX921649.1 · 78,988–79,401 bp · −
rpl14 · PX921649.1 · 79,569–79,937 bp · −
rpl16 · PX921649.1 · 80,064–81,372 bp · −
rps3 · PX921649.1 · 81,519–82,181 bp · −
rpl22 · PX921649.1 · 82,166–82,630 bp · −
rps19 · PX921649.1 · 82,689–82,967 bp · −
rpl2 · PX921649.1 · 83,020–84,511 bp · −
rpl23 · PX921649.1 · 84,530–84,811 bp · −
trnI-CAU · PX921649.1 · 84,977–85,050 bp · −
trnL-CAA · PX921649.1 · 92,529–92,611 bp · −
trnL-CAA · PX921649.1 · 92,530–92,610 bp · −
ndhB · PX921649.1 · 93,155–95,366 bp · −
rps7 · PX921649.1 · 95,641–96,108 bp · −
trnN-GUU · PX921649.1 · 107,052–107,123 bp · −
ndhF · PX921649.1 · 108,512–110,734 bp · −
ndhD · PX921649.1 · 113,262–114,764 bp · −
psaC · PX921649.1 · 114,900–115,145 bp · −
ndhE · PX921649.1 · 115,408–115,713 bp · −
ndhG · PX921649.1 · 115,928–116,458 bp · −
ndhI · PX921649.1 · 116,831–117,337 bp · −
ndhA · PX921649.1 · 117,424–119,587 bp · −
ndhH · PX921649.1 · 119,589–120,770 bp · −
rps15 · PX921649.1 · 120,871–121,143 bp · −
ycf1 · PX921649.1 · 121,524–127,016 bp · −
trnR-ACG · PX921649.1 · 127,984–128,057 bp · −
rrn5 · PX921649.1 · 128,292–128,412 bp · −
rrn4.5 · PX921649.1 · 128,668–128,770 bp · −
rrn23 · PX921649.1 · 128,869–131,679 bp · −
trnA-UGC · PX921649.1 · 131,871–132,749 bp · −
trnI-GAU · PX921649.1 · 132,814–133,821 bp · −
rrn16 · PX921649.1 · 134,111–135,601 bp · −
trnV-GAC · PX921649.1 · 135,828–135,899 bp · −
ycf2 · PX921649.1 · 142,486–149,325 bp · −
psbK · PX921649.1 · 7,668–7,853 bp · +
psbI · PX921649.1 · 8,231–8,341 bp · +
trnG-UCC · PX921649.1 · 9,109–9,866 bp · +
trnR-UCU · PX921649.1 · 10,047–10,118 bp · +
trnC-GCA · PX921649.1 · 28,120–28,190 bp · +
petN · PX921649.1 · 29,028–29,117 bp · +
trnT-GGU · PX921649.1 · 31,533–31,604 bp · +
psbD · PX921649.1 · 32,851–33,912 bp · +
psbC · PX921649.1 · 33,896–35,281 bp · +
psbZ · PX921649.1 · 35,931–36,119 bp · +
trnG-GCC · PX921649.1 · 36,349–36,419 bp · +
trnS-GGA · PX921649.1 · 44,689–44,775 bp · +
trnL-UAA · PX921649.1 · 46,796–47,368 bp · +
trnF-GAA · PX921649.1 · 47,663–47,735 bp · +
trnM-CAU · PX921649.1 · 51,875–51,947 bp · +
rbcL · PX921649.1 · 54,872–56,317 bp · +
accD · PX921649.1 · 57,013–58,479 bp · +
psaI · PX921649.1 · 59,159–59,269 bp · +
pafII · PX921649.1 · 59,707–60,261 bp · +
cemA · PX921649.1 · 60,821–61,510 bp · +
petA · PX921649.1 · 61,727–62,689 bp · +
petL · PX921649.1 · 65,134–65,229 bp · +
petG · PX921649.1 · 65,404–65,517 bp · +
psaJ · PX921649.1 · 66,226–66,360 bp · +
rpl33 · PX921649.1 · 66,827–67,027 bp · +
rps18 · PX921649.1 · 67,175–67,480 bp · +
rps12 · PX921649.1 · 137,509–138,302 bp · +
psbB · PX921649.1 · 71,392–72,918 bp · +
psbT · PX921649.1 · 73,108–73,209 bp · +
psbH · PX921649.1 · 73,518–73,739 bp · +
petB · PX921649.1 · 73,864–75,246 bp · +
petD · PX921649.1 · 75,441–76,652 bp · +
ycf2 · PX921649.1 · 85,139–91,978 bp · +
trnV-GAC · PX921649.1 · 98,565–98,636 bp · +
rrn16 · PX921649.1 · 98,863–100,353 bp · +
trnI-GAU · PX921649.1 · 100,643–101,650 bp · +
trnA-UGC · PX921649.1 · 101,715–102,593 bp · +
rrn23 · PX921649.1 · 102,785–105,595 bp · +
rrn4.5 · PX921649.1 · 105,694–105,796 bp · +
rrn5 · PX921649.1 · 106,052–106,172 bp · +
trnR-ACG · PX921649.1 · 106,407–106,480 bp · +
ycf1 · PX921649.1 · 107,448–108,566 bp · +
rpl32 · PX921649.1 · 111,245–111,421 bp · +
trnL-UAG · PX921649.1 · 111,946–112,025 bp · +
ccsA · PX921649.1 · 112,110–113,081 bp · +
trnN-GUU · PX921649.1 · 127,341–127,412 bp · +
rps7 · PX921649.1 · 138,356–138,823 bp · +
ndhB · PX921649.1 · 139,098–141,309 bp · +
trnL-CAA · PX921649.1 · 141,854–141,934 bp · +
trnI-CAU · PX921649.1 · 149,414–149,487 bp · +
rpl23 · PX921649.1 · 149,653–149,934 bp · +
rpl2 · PX921649.1 · 149,953–151,444 bp · +
rps19 · PX921649.1 · 151,497–151,538 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides isochila
ANNOTATED PLASTOME
PX921649.1
151,538 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37884 75769 113654 151538 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 322 1380 1059 Locate
trnK-UUU gene − 1613 4201 2589 Locate
matK gene − 1918 3453 1536 Locate
rps16 gene − 5126 6265 1140 Locate
trnQ-UUG gene − 7259 7331 73 Locate
psbK gene + 7668 7853 186 Locate
psbI gene + 8231 8341 111 Locate
trnS-GCU gene − 8458 8545 88 Locate
trnG-UCC gene + 9109 9866 758 Locate
trnR-UCU gene + 10047 10118 72 Locate
atpA gene − 10215 11738 1524 Locate
atpF gene − 11826 13081 1256 Locate
atpH gene − 13447 13692 246 Locate
atpI gene − 14683 15426 744 Locate
rps2 gene − 15657 16367 711 Locate
rpoC2 gene − 16587 20762 4176 Locate
rpoC1 gene − 20929 23775 2847 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28120 28190 71 Locate
petN gene + 29028 29117 90 Locate
psbM gene − 29906 30010 105 Locate
trnD-GUC gene − 30547 30620 74 Locate
trnY-GUA gene − 30734 30817 84 Locate
trnE-UUC gene − 30877 30949 73 Locate
trnT-GGU gene + 31533 31604 72 Locate
psbD gene + 32851 33912 1062 Locate
psbC gene + 33896 35281 1386 Locate
trnS-UGA gene − 35512 35604 93 Locate
psbZ gene + 35931 36119 189 Locate
trnG-GCC gene + 36349 36419 71 Locate
trnfM-CAU gene − 36570 36643 74 Locate
rps14 gene − 36793 37095 303 Locate
psaB gene − 37223 39427 2205 Locate
psaA gene − 39453 41705 2253 Locate
pafI gene − 42438 44373 1936 Locate
trnS-GGA gene + 44689 44775 87 Locate
rps4 gene − 45061 45666 606 Locate
trnT-UGU gene − 46061 46133 73 Locate
trnL-UAA gene + 46796 47368 573 Locate
trnF-GAA gene + 47663 47735 73 Locate
ndhJ gene − 48408 48884 477 Locate
ndhK gene − 48990 49667 678 Locate
ndhK gene − 48990 49730 741 Locate
ndhC gene − 49721 50083 363 Locate
trnV-UAC gene − 51039 51686 648 Locate
trnM-CAU gene + 51875 51947 73 Locate
atpE gene − 52170 52571 402 Locate
atpB gene − 52568 54064 1497 Locate
rbcL gene + 54872 56317 1446 Locate
accD gene + 57013 58479 1467 Locate
psaI gene + 59159 59269 111 Locate
pafII gene + 59707 60261 555 Locate
cemA gene + 60821 61510 690 Locate
petA gene + 61727 62689 963 Locate
psbJ gene − 63716 63838 123 Locate
psbL gene − 63976 64092 117 Locate
psbF gene − 64116 64235 120 Locate
psbE gene − 64250 64501 252 Locate
petL gene + 65134 65229 96 Locate
petG gene + 65404 65517 114 Locate
trnW-CCA gene − 65642 65715 74 Locate
trnP-UGG gene − 65878 65951 74 Locate
psaJ gene + 66226 66360 135 Locate
rpl33 gene + 66827 67027 201 Locate
rps18 gene + 67175 67480 306 Locate
rpl20 gene − 67696 68082 387 Locate
rps12 gene − 68844 68957 114 Locate
clpP1 gene − 69084 70959 1876 Locate
psbB gene + 71392 72918 1527 Locate
psbT gene + 73108 73209 102 Locate
psbN gene − 73283 73414 132 Locate
psbH gene + 73518 73739 222 Locate
petB gene + 73864 75246 1383 Locate
petD gene + 75441 76652 1212 Locate
rpoA gene − 76815 77828 1014 Locate
rps11 gene − 77900 78316 417 Locate
rpl36 gene − 78419 78532 114 Locate
infA gene − 78628 78861 234 Locate
rps8 gene − 78988 79401 414 Locate
rpl14 gene − 79569 79937 369 Locate
rpl16 gene − 80064 81372 1309 Locate
rps3 gene − 81519 82181 663 Locate
rpl22 gene − 82166 82630 465 Locate
rps19 gene − 82689 82967 279 Locate
rpl2 gene − 83020 84511 1492 Locate
rpl23 gene − 84530 84811 282 Locate
trnI-CAU gene − 84977 85050 74 Locate
ycf2 gene + 85139 91978 6840 Locate
trnL-CAA gene − 92529 92611 83 Locate
trnL-CAA gene − 92530 92610 81 Locate
ndhB gene − 93155 95366 2212 Locate
rps7 gene − 95641 96108 468 Locate
rps12 gene − 96162 96955 794 Locate
trnV-GAC gene + 98565 98636 72 Locate
rrn16 gene + 98863 100353 1491 Locate
trnI-GAU gene + 100643 101650 1008 Locate
trnA-UGC gene + 101715 102593 879 Locate
rrn23 gene + 102785 105595 2811 Locate
rrn4.5 gene + 105694 105796 103 Locate
rrn5 gene + 106052 106172 121 Locate
trnR-ACG gene + 106407 106480 74 Locate
trnN-GUU gene − 107052 107123 72 Locate
ycf1 gene + 107448 108566 1119 Locate
ndhF gene − 108512 110734 2223 Locate
rpl32 gene + 111245 111421 177 Locate
trnL-UAG gene + 111946 112025 80 Locate
ccsA gene + 112110 113081 972 Locate
ndhD gene − 113262 114764 1503 Locate
psaC gene − 114900 115145 246 Locate
ndhE gene − 115408 115713 306 Locate
ndhG gene − 115928 116458 531 Locate
ndhI gene − 116831 117337 507 Locate
ndhA gene − 117424 119587 2164 Locate
ndhH gene − 119589 120770 1182 Locate
rps15 gene − 120871 121143 273 Locate
ycf1 gene − 121524 127016 5493 Locate
trnN-GUU gene + 127341 127412 72 Locate
trnR-ACG gene − 127984 128057 74 Locate
rrn5 gene − 128292 128412 121 Locate
rrn4.5 gene − 128668 128770 103 Locate
rrn23 gene − 128869 131679 2811 Locate
trnA-UGC gene − 131871 132749 879 Locate
trnI-GAU gene − 132814 133821 1008 Locate
rrn16 gene − 134111 135601 1491 Locate
trnV-GAC gene − 135828 135899 72 Locate
rps12 gene + 137509 138302 794 Locate
rps7 gene + 138356 138823 468 Locate
ndhB gene + 139098 141309 2212 Locate
trnL-CAA gene + 141854 141934 81 Locate
ycf2 gene − 142486 149325 6840 Locate
trnI-CAU gene + 149414 149487 74 Locate
rpl23 gene + 149653 149934 282 Locate
rpl2 gene + 149953 151444 1492 Locate
rps19 gene + 151497 151538 42 Locate
Status Available
Accession PX921649.1
Length 151,538 bp
GC content 38.5%
Annotated genes 134
Gene sequence records 8
Translation Rna 38 Photosystem Ii 15 Other 13 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 13 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources