Phlomoides rotata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · NC_065733.1 · 1–1,034 bp · −
ycf1 · NC_065733.1 · 147,251–151,733 bp · −
trnR-ACG · NC_065733.1 · 2,003–2,077 bp · −
trnR-ACG · NC_065733.1 · 2,004–2,077 bp · −
rrn5 · NC_065733.1 · 2,312–2,432 bp · −
rrn4.5 · NC_065733.1 · 2,688–2,790 bp · −
rrn23 · NC_065733.1 · 2,889–5,699 bp · −
trnA-UGC · NC_065733.1 · 5,891–6,769 bp · −
trnI-GAU · NC_065733.1 · 6,834–7,842 bp · −
rrn16 · NC_065733.1 · 8,132–9,622 bp · −
trnV-GAC · NC_065733.1 · 9,850–9,921 bp · −
rps12 · NC_065733.1 · 94,300–94,413 bp · −
ycf15 · NC_065733.1 · 16,224–16,472 bp · −
ycf2 · NC_065733.1 · 16,515–23,381 bp · −
trnH-GUG · NC_065733.1 · 25,594–25,668 bp · −
trnH-GUG · NC_065733.1 · 25,595–25,668 bp · −
trnH-GUG · NC_065733.1 · 25,595–25,669 bp · −
psbA · NC_065733.1 · 25,917–26,975 bp · −
trnK-UUU · NC_065733.1 · 27,206–29,796 bp · −
trnK-UUU · NC_065733.1 · 27,208–29,796 bp · −
matK · NC_065733.1 · 27,510–29,045 bp · −
rps16 · NC_065733.1 · 30,711–31,854 bp · −
trnQ-UUG · NC_065733.1 · 32,530–32,602 bp · −
trnQ-UUG · NC_065733.1 · 32,531–32,602 bp · −
trnS-GCU · NC_065733.1 · 33,745–33,832 bp · −
atpA · NC_065733.1 · 35,622–37,145 bp · −
atpF · NC_065733.1 · 37,233–38,443 bp · −
atpH · NC_065733.1 · 38,809–39,054 bp · −
atpI · NC_065733.1 · 39,988–40,731 bp · −
rps2 · NC_065733.1 · 40,962–41,672 bp · −
rpoC2 · NC_065733.1 · 41,892–46,082 bp · −
rpoC1 · NC_065733.1 · 46,237–49,076 bp · −
rpoB · NC_065733.1 · 49,103–52,315 bp · −
psbM · NC_065733.1 · 55,182–55,286 bp · −
trnD-GUC · NC_065733.1 · 55,815–55,890 bp · −
trnD-GUC · NC_065733.1 · 55,816–55,889 bp · −
trnY-GUA · NC_065733.1 · 56,004–56,089 bp · −
trnY-GUA · NC_065733.1 · 56,005–56,088 bp · −
trnE-UUC · NC_065733.1 · 56,148–56,220 bp · −
trnS-UGA · NC_065733.1 · 60,690–60,782 bp · −
trnM-CAU · NC_065733.1 · 61,742–61,816 bp · −
trnfM-CAU · NC_065733.1 · 61,743–61,816 bp · −
rps14 · NC_065733.1 · 61,966–62,268 bp · −
psaB · NC_065733.1 · 62,396–64,600 bp · −
psaA · NC_065733.1 · 64,626–66,878 bp · −
pafI · NC_065733.1 · 67,608–69,548 bp · −
rps4 · NC_065733.1 · 70,236–70,841 bp · −
trnT-UGU · NC_065733.1 · 71,229–71,303 bp · −
trnT-UGU · NC_065733.1 · 71,230–71,302 bp · −
ndhJ · NC_065733.1 · 73,590–74,066 bp · −
ndhK · NC_065733.1 · 74,167–74,844 bp · −
ndhC · NC_065733.1 · 74,897–75,259 bp · −
trnV-UAC · NC_065733.1 · 76,221–76,873 bp · −
atpE · NC_065733.1 · 77,352–77,753 bp · −
atpB · NC_065733.1 · 77,750–79,246 bp · −
psbJ · NC_065733.1 · 88,889–89,011 bp · −
psbL · NC_065733.1 · 89,149–89,265 bp · −
psbF · NC_065733.1 · 89,289–89,408 bp · −
psbE · NC_065733.1 · 89,423–89,674 bp · −
trnW-CCA · NC_065733.1 · 91,105–91,178 bp · −
trnP-UGG · NC_065733.1 · 91,328–91,403 bp · −
trnP-UGG · NC_065733.1 · 91,330–91,403 bp · −
rpl20 · NC_065733.1 · 93,152–93,538 bp · −
rps12 · NC_065733.1 · 121,675–122,468 bp · −
clpP1 · NC_065733.1 · 94,545–96,417 bp · −
pbf1 · NC_065733.1 · 98,741–98,872 bp · −
rpoA · NC_065733.1 · 102,294–103,313 bp · −
rps11 · NC_065733.1 · 103,385–103,801 bp · −
rpl36 · NC_065733.1 · 103,904–104,017 bp · −
infA · NC_065733.1 · 104,113–104,346 bp · −
rps8 · NC_065733.1 · 104,470–104,883 bp · −
rpl14 · NC_065733.1 · 105,065–105,433 bp · −
rpl16 · NC_065733.1 · 105,560–106,852 bp · −
rps3 · NC_065733.1 · 106,990–107,652 bp · −
rpl22 · NC_065733.1 · 107,637–108,101 bp · −
rps19 · NC_065733.1 · 108,176–108,454 bp · −
rpl2 · NC_065733.1 · 108,507–109,997 bp · −
rpl23 · NC_065733.1 · 110,016–110,297 bp · −
trnM-CAU · NC_065733.1 · 110,462–110,536 bp · −
trnI-CAU · NC_065733.1 · 110,463–110,536 bp · −
trnL-CAA · NC_065733.1 · 118,042–118,124 bp · −
trnL-CAA · NC_065733.1 · 118,043–118,123 bp · −
ndhB · NC_065733.1 · 118,668–120,879 bp · −
rps7 · NC_065733.1 · 121,154–121,621 bp · −
trnN-GUU · NC_065733.1 · 132,574–132,647 bp · −
trnN-GUU · NC_065733.1 · 132,575–132,646 bp · −
ndhF · NC_065733.1 · 134,036–136,258 bp · −
ndhD · NC_065733.1 · 139,005–140,414 bp · −
psaC · NC_065733.1 · 140,626–140,871 bp · −
ndhE · NC_065733.1 · 141,136–141,441 bp · −
ndhG · NC_065733.1 · 141,649–142,179 bp · −
ndhI · NC_065733.1 · 142,552–143,058 bp · −
ndhA · NC_065733.1 · 143,140–145,308 bp · −
ndhH · NC_065733.1 · 145,310–146,491 bp · −
rps15 · NC_065733.1 · 146,592–146,864 bp · −
trnN-GUU · NC_065733.1 · 1,359–1,432 bp · +
trnN-GUU · NC_065733.1 · 1,360–1,431 bp · +
rps12 · NC_065733.1 · 11,538–12,331 bp · +
rps7 · NC_065733.1 · 12,385–12,852 bp · +
ndhB · NC_065733.1 · 13,127–15,338 bp · +
trnL-CAA · NC_065733.1 · 15,882–15,964 bp · +
trnL-CAA · NC_065733.1 · 15,883–15,963 bp · +
trnI-CAU · NC_065733.1 · 23,470–23,543 bp · +
trnM-CAU · NC_065733.1 · 23,470–23,544 bp · +
rpl23 · NC_065733.1 · 23,709–23,990 bp · +
rpl2 · NC_065733.1 · 24,009–25,499 bp · +
psbK · NC_065733.1 · 32,939–33,124 bp · +
psbI · NC_065733.1 · 33,507–33,617 bp · +
trnS-CGA · NC_065733.1 · 34,516–35,278 bp · +
trnG-UCC · NC_065733.1 · 34,517–35,277 bp · +
trnR-UCU · NC_065733.1 · 35,454–35,525 bp · +
trnC-GCA · NC_065733.1 · 53,417–53,487 bp · +
petN · NC_065733.1 · 54,311–54,406 bp · +
trnT-GGU · NC_065733.1 · 56,810–56,883 bp · +
trnT-GGU · NC_065733.1 · 56,811–56,882 bp · +
psbD · NC_065733.1 · 58,026–59,087 bp · +
psbC · NC_065733.1 · 59,035–60,456 bp · +
psbZ · NC_065733.1 · 61,109–61,297 bp · +
trnG-GCC · NC_065733.1 · 61,524–61,594 bp · +
trnG-GCC · NC_065733.1 · 61,524–61,595 bp · +
trnS-GGA · NC_065733.1 · 69,865–69,951 bp · +
trnL-UAA · NC_065733.1 · 71,973–72,546 bp · +
trnF-GAA · NC_065733.1 · 72,838–72,910 bp · +
trnF-GAA · NC_065733.1 · 72,838–72,911 bp · +
trnM-CAU · NC_065733.1 · 77,062–77,134 bp · +
rbcL · NC_065733.1 · 80,056–81,501 bp · +
accD · NC_065733.1 · 82,191–83,657 bp · +
psaI · NC_065733.1 · 84,348–84,458 bp · +
pafII · NC_065733.1 · 84,897–85,451 bp · +
cemA · NC_065733.1 · 86,012–86,701 bp · +
petA · NC_065733.1 · 86,918–87,880 bp · +
petL · NC_065733.1 · 90,596–90,691 bp · +
petG · NC_065733.1 · 90,866–90,979 bp · +
psaJ · NC_065733.1 · 91,678–91,812 bp · +
rpl33 · NC_065733.1 · 92,283–92,483 bp · +
rps18 · NC_065733.1 · 92,631–92,936 bp · +
psbB · NC_065733.1 · 96,849–98,375 bp · +
psbT · NC_065733.1 · 98,566–98,667 bp · +
psbH · NC_065733.1 · 98,976–99,197 bp · +
petB · NC_065733.1 · 99,322–100,706 bp · +
petD · NC_065733.1 · 100,901–102,125 bp · +
ycf2 · NC_065733.1 · 110,625–117,491 bp · +
ycf15 · NC_065733.1 · 117,534–117,782 bp · +
trnV-GAC · NC_065733.1 · 124,085–124,156 bp · +
rrn16 · NC_065733.1 · 124,384–125,874 bp · +
trnI-GAU · NC_065733.1 · 126,164–127,172 bp · +
trnA-UGC · NC_065733.1 · 127,237–128,115 bp · +
rrn23 · NC_065733.1 · 128,307–131,117 bp · +
rrn4.5 · NC_065733.1 · 131,216–131,318 bp · +
rrn5 · NC_065733.1 · 131,574–131,694 bp · +
trnR-ACG · NC_065733.1 · 131,929–132,002 bp · +
trnR-ACG · NC_065733.1 · 131,929–132,003 bp · +
ycf1 · NC_065733.1 · 132,972–134,090 bp · +
rpl32 · NC_065733.1 · 136,763–136,939 bp · +
trnL-UAG · NC_065733.1 · 137,679–137,758 bp · +
ccsA · NC_065733.1 · 137,859–138,821 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Phlomoides rotata
ANNOTATED PLASTOME
NC_065733.1
151,733 bp · 154 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 37933 75866 113800 151733 bp
Forward strand 5′ → 3′
trnN-GUU trnN-GUU rps12 rps7 ndhB trnL-CAA trnL-CAA trnI-CAU trnM-CAU rpl23 rpl2 psbK psbI trnS-CGA trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU trnT-GGU psbD psbC psbZ trnG-GCC trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnR-ACG ycf1 rpl32 trnL-UAG ccsA
ycf1 trnR-ACG trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG trnH-GUG trnH-GUG psbA trnK-UUU trnK-UUU matK rps16 trnQ-UUG trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnD-GUC trnY-GUA trnY-GUA trnE-UUC trnS-UGA trnM-CAU trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnI-CAU trnL-CAA trnL-CAA ndhB rps7 rps12 trnN-GUU trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
156 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1034 1034 Locate
trnN-GUU gene + 1359 1432 74 Locate
trnN-GUU gene + 1360 1431 72 Locate
trnR-ACG gene − 2003 2077 75 Locate
trnR-ACG gene − 2004 2077 74 Locate
rrn5 gene − 2312 2432 121 Locate
rrn4.5 gene − 2688 2790 103 Locate
rrn23 gene − 2889 5699 2811 Locate
trnA-UGC gene − 5891 6769 879 Locate
trnI-GAU gene − 6834 7842 1009 Locate
rrn16 gene − 8132 9622 1491 Locate
trnV-GAC gene − 9850 9921 72 Locate
rps12 gene + 11538 12331 794 Locate
rps7 gene + 12385 12852 468 Locate
ndhB gene + 13127 15338 2212 Locate
trnL-CAA gene + 15882 15964 83 Locate
trnL-CAA gene + 15883 15963 81 Locate
ycf15 gene − 16224 16472 249 Locate
ycf2 gene − 16515 23381 6867 Locate
trnI-CAU gene + 23470 23543 74 Locate
trnM-CAU gene + 23470 23544 75 Locate
rpl23 gene + 23709 23990 282 Locate
rpl2 gene + 24009 25499 1491 Locate
trnH-GUG gene − 25594 25668 75 Locate
trnH-GUG gene − 25595 25668 74 Locate
trnH-GUG gene − 25595 25669 75 Locate
psbA gene − 25917 26975 1059 Locate
trnK-UUU gene − 27206 29796 2591 Locate
trnK-UUU gene − 27208 29796 2589 Locate
matK gene − 27510 29045 1536 Locate
rps16 gene − 30711 31854 1144 Locate
trnQ-UUG gene − 32530 32602 73 Locate
trnQ-UUG gene − 32531 32602 72 Locate
psbK gene + 32939 33124 186 Locate
psbI gene + 33507 33617 111 Locate
trnS-GCU gene − 33745 33832 88 Locate
trnS-CGA gene + 34516 35278 763 Locate
trnG-UCC gene + 34517 35277 761 Locate
trnR-UCU gene + 35454 35525 72 Locate
atpA gene − 35622 37145 1524 Locate
atpF gene − 37233 38443 1211 Locate
atpH gene − 38809 39054 246 Locate
atpI gene − 39988 40731 744 Locate
rps2 gene − 40962 41672 711 Locate
rpoC2 gene − 41892 46082 4191 Locate
rpoC1 gene − 46237 49076 2840 Locate
rpoB gene − 49103 52315 3213 Locate
trnC-GCA gene + 53417 53487 71 Locate
petN gene + 54311 54406 96 Locate
psbM gene − 55182 55286 105 Locate
trnD-GUC gene − 55815 55890 76 Locate
trnD-GUC gene − 55816 55889 74 Locate
trnY-GUA gene − 56004 56089 86 Locate
trnY-GUA gene − 56005 56088 84 Locate
trnE-UUC gene − 56148 56220 73 Locate
trnT-GGU gene + 56810 56883 74 Locate
trnT-GGU gene + 56811 56882 72 Locate
psbD gene + 58026 59087 1062 Locate
psbC gene + 59035 60456 1422 Locate
trnS-UGA gene − 60690 60782 93 Locate
psbZ gene + 61109 61297 189 Locate
trnG-GCC gene + 61524 61594 71 Locate
trnG-GCC gene + 61524 61595 72 Locate
trnM-CAU gene − 61742 61816 75 Locate
trnfM-CAU gene − 61743 61816 74 Locate
rps14 gene − 61966 62268 303 Locate
psaB gene − 62396 64600 2205 Locate
psaA gene − 64626 66878 2253 Locate
pafI gene − 67608 69548 1941 Locate
trnS-GGA gene + 69865 69951 87 Locate
rps4 gene − 70236 70841 606 Locate
trnT-UGU gene − 71229 71303 75 Locate
trnT-UGU gene − 71230 71302 73 Locate
trnL-UAA gene + 71973 72546 574 Locate
trnF-GAA gene + 72838 72910 73 Locate
trnF-GAA gene + 72838 72911 74 Locate
ndhJ gene − 73590 74066 477 Locate
ndhK gene − 74167 74844 678 Locate
ndhC gene − 74897 75259 363 Locate
trnV-UAC gene − 76221 76873 653 Locate
trnM-CAU gene + 77062 77134 73 Locate
atpE gene − 77352 77753 402 Locate
atpB gene − 77750 79246 1497 Locate
rbcL gene + 80056 81501 1446 Locate
accD gene + 82191 83657 1467 Locate
psaI gene + 84348 84458 111 Locate
pafII gene + 84897 85451 555 Locate
cemA gene + 86012 86701 690 Locate
petA gene + 86918 87880 963 Locate
psbJ gene − 88889 89011 123 Locate
psbL gene − 89149 89265 117 Locate
psbF gene − 89289 89408 120 Locate
psbE gene − 89423 89674 252 Locate
petL gene + 90596 90691 96 Locate
petG gene + 90866 90979 114 Locate
trnW-CCA gene − 91105 91178 74 Locate
trnP-UGG gene − 91328 91403 76 Locate
trnP-UGG gene − 91330 91403 74 Locate
psaJ gene + 91678 91812 135 Locate
rpl33 gene + 92283 92483 201 Locate
rps18 gene + 92631 92936 306 Locate
rpl20 gene − 93152 93538 387 Locate
rps12 gene − 94300 94413 114 Locate
clpP1 gene − 94545 96417 1873 Locate
psbB gene + 96849 98375 1527 Locate
psbT gene + 98566 98667 102 Locate
pbf1 gene − 98741 98872 132 Locate
psbH gene + 98976 99197 222 Locate
petB gene + 99322 100706 1385 Locate
petD gene + 100901 102125 1225 Locate
rpoA gene − 102294 103313 1020 Locate
rps11 gene − 103385 103801 417 Locate
rpl36 gene − 103904 104017 114 Locate
infA gene − 104113 104346 234 Locate
rps8 gene − 104470 104883 414 Locate
rpl14 gene − 105065 105433 369 Locate
rpl16 gene − 105560 106852 1293 Locate
rps3 gene − 106990 107652 663 Locate
rpl22 gene − 107637 108101 465 Locate
rps19 gene − 108176 108454 279 Locate
rpl2 gene − 108507 109997 1491 Locate
rpl23 gene − 110016 110297 282 Locate
trnM-CAU gene − 110462 110536 75 Locate
trnI-CAU gene − 110463 110536 74 Locate
ycf2 gene + 110625 117491 6867 Locate
ycf15 gene + 117534 117782 249 Locate
trnL-CAA gene − 118042 118124 83 Locate
trnL-CAA gene − 118043 118123 81 Locate
ndhB gene − 118668 120879 2212 Locate
rps7 gene − 121154 121621 468 Locate
rps12 gene − 121675 122468 794 Locate
trnV-GAC gene + 124085 124156 72 Locate
rrn16 gene + 124384 125874 1491 Locate
trnI-GAU gene + 126164 127172 1009 Locate
trnA-UGC gene + 127237 128115 879 Locate
rrn23 gene + 128307 131117 2811 Locate
rrn4.5 gene + 131216 131318 103 Locate
rrn5 gene + 131574 131694 121 Locate
trnR-ACG gene + 131929 132002 74 Locate
trnR-ACG gene + 131929 132003 75 Locate
trnN-GUU gene − 132574 132647 74 Locate
trnN-GUU gene − 132575 132646 72 Locate
ycf1 gene + 132972 134090 1119 Locate
ndhF gene − 134036 136258 2223 Locate
rpl32 gene + 136763 136939 177 Locate
trnL-UAG gene + 137679 137758 80 Locate
ccsA gene + 137859 138821 963 Locate
ndhD gene − 139005 140414 1410 Locate
psaC gene − 140626 140871 246 Locate
ndhE gene − 141136 141441 306 Locate
ndhG gene − 141649 142179 531 Locate
ndhI gene − 142552 143058 507 Locate
ndhA gene − 143140 145308 2169 Locate
ndhH gene − 145310 146491 1182 Locate
rps15 gene − 146592 146864 273 Locate
ycf1 gene − 147251 151733 4483 Locate
Status Available
Accession NC_065733.1
Length 151,733 bp
GC content 38.4%
Annotated genes 154
Gene sequence records 8
Other 17 Translation Rna 58 Ribosomal Rna 8 Ribosomal Protein 26 Nad Dehydrogenase 12 Photosystem Ii 14 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources