Pogostemon cablin chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_042796.1 · 2–76 bp · −
psbA · NC_042796.1 · 287–1,345 bp · −
trnK-UUU · NC_042796.1 · 1,577–4,180 bp · −
matK · NC_042796.1 · 1,894–3,429 bp · −
rps16 · NC_042796.1 · 5,070–6,216 bp · −
trnQ-UUG · NC_042796.1 · 7,364–7,435 bp · −
trnS-GCU · NC_042796.1 · 8,541–8,628 bp · −
atpA · NC_042796.1 · 10,416–11,939 bp · −
atpF · NC_042796.1 · 12,041–13,319 bp · −
atpH · NC_042796.1 · 13,693–13,938 bp · −
atpI · NC_042796.1 · 14,967–15,710 bp · −
rps2 · NC_042796.1 · 15,924–16,634 bp · −
rpoC2 · NC_042796.1 · 16,859–21,013 bp · −
rpoC1 · NC_042796.1 · 21,168–23,994 bp · −
rpoB · NC_042796.1 · 24,021–27,233 bp · −
psbM · NC_042796.1 · 29,533–29,637 bp · −
trnD-GUC · NC_042796.1 · 30,141–30,217 bp · −
trnY-GUA · NC_042796.1 · 30,324–30,410 bp · −
trnE-UUC · NC_042796.1 · 30,469–30,541 bp · −
trnS-UGA · NC_042796.1 · 34,960–35,052 bp · −
trnfM-CAU · NC_042796.1 · 36,035–36,109 bp · −
rps14 · NC_042796.1 · 36,259–36,561 bp · −
psaB · NC_042796.1 · 36,689–38,893 bp · −
psaA · NC_042796.1 · 38,919–41,171 bp · −
ycf3 · NC_042796.1 · 41,913–43,847 bp · −
rps4 · NC_042796.1 · 45,114–45,719 bp · −
trnT-UGU · NC_042796.1 · 46,086–46,160 bp · −
ndhJ · NC_042796.1 · 48,678–49,154 bp · −
ndhK · NC_042796.1 · 49,260–49,937 bp · −
ndhC · NC_042796.1 · 49,992–50,354 bp · −
trnC-ACA · NC_042796.1 · 51,146–51,806 bp · −
atpE · NC_042796.1 · 52,283–52,684 bp · −
atpB · NC_042796.1 · 52,681–54,177 bp · −
psbJ · NC_042796.1 · 63,846–63,968 bp · −
psbL · NC_042796.1 · 64,111–64,227 bp · −
psbF · NC_042796.1 · 64,251–64,370 bp · −
psbE · NC_042796.1 · 64,385–64,636 bp · −
trnW-CCA · NC_042796.1 · 66,071–66,144 bp · −
trnP-UGG · NC_042796.1 · 66,316–66,391 bp · −
rpl20 · NC_042796.1 · 68,159–68,545 bp · −
rps12 · NC_042796.1 · 69,303–69,416 bp · −
rps12 · NC_042796.1 · 96,817–97,610 bp · −
clpP · NC_042796.1 · 69,546–71,503 bp · −
psbN · NC_042796.1 · 73,833–73,964 bp · −
rpoA · NC_042796.1 · 77,378–78,400 bp · −
rps11 · NC_042796.1 · 78,472–78,888 bp · −
rpl36 · NC_042796.1 · 78,991–79,104 bp · −
infA · NC_042796.1 · 79,200–79,433 bp · −
rps8 · NC_042796.1 · 79,551–79,964 bp · −
rpl14 · NC_042796.1 · 80,143–80,511 bp · −
rpl16 · NC_042796.1 · 80,646–81,996 bp · −
rps3 · NC_042796.1 · 82,140–82,802 bp · −
rpl22 · NC_042796.1 · 82,787–83,257 bp · −
rps19 · NC_042796.1 · 83,317–83,595 bp · −
rpl2 · NC_042796.1 · 83,651–85,142 bp · −
rpl23 · NC_042796.1 · 85,161–85,442 bp · −
trnM-CAU · NC_042796.1 · 85,607–85,681 bp · −
trnL-CAA · NC_042796.1 · 93,175–93,257 bp · −
ndhB · NC_042796.1 · 93,810–96,021 bp · −
rps7 · NC_042796.1 · 96,296–96,763 bp · −
trnN-GUU · NC_042796.1 · 107,720–107,793 bp · −
ndhF · NC_042796.1 · 109,178–111,412 bp · −
ndhD · NC_042796.1 · 114,154–115,674 bp · −
psaC · NC_042796.1 · 115,767–116,012 bp · −
ndhE · NC_042796.1 · 116,265–116,570 bp · −
ndhG · NC_042796.1 · 116,787–117,317 bp · −
ndhI · NC_042796.1 · 117,623–118,129 bp · −
ndhA · NC_042796.1 · 118,239–120,388 bp · −
ndhH · NC_042796.1 · 120,390–121,571 bp · −
rps15 · NC_042796.1 · 121,672–121,944 bp · −
ycf1 · NC_042796.1 · 122,345–127,888 bp · −
trnR-ACG · NC_042796.1 · 128,855–128,929 bp · −
rrn5 · NC_042796.1 · 129,176–129,296 bp · −
rrn4.5 · NC_042796.1 · 129,548–129,650 bp · −
rrn23 · NC_042796.1 · 129,749–132,565 bp · −
trnA-UGC · NC_042796.1 · 132,750–133,634 bp · −
trnI · NC_042796.1 · 133,703–134,709 bp · −
rrn16 · NC_042796.1 · 135,000–136,490 bp · −
trnV-GAC · NC_042796.1 · 136,717–136,788 bp · −
ycf15 · NC_042796.1 · 143,100–143,348 bp · −
ycf2 · NC_042796.1 · 143,391–150,245 bp · −
psbK · NC_042796.1 · 7,762–7,947 bp · +
psbI · NC_042796.1 · 8,306–8,416 bp · +
trnS-CGA · NC_042796.1 · 9,281–10,038 bp · +
trnR-UCU · NC_042796.1 · 10,234–10,305 bp · +
trnC-GCA · NC_042796.1 · 28,197–28,267 bp · +
petN · NC_042796.1 · 28,480–28,569 bp · +
trnT-GGU · NC_042796.1 · 31,092–31,165 bp · +
psbD · NC_042796.1 · 32,294–33,355 bp · +
psbC · NC_042796.1 · 33,303–34,724 bp · +
psbZ · NC_042796.1 · 35,345–35,533 bp · +
trnG-GCC · NC_042796.1 · 35,803–35,874 bp · +
trnS-GGA · NC_042796.1 · 44,762–44,848 bp · +
trnL-UAA · NC_042796.1 · 46,842–47,413 bp · +
trnF-GAA · NC_042796.1 · 47,731–47,804 bp · +
trnM-CAU · NC_042796.1 · 51,987–52,059 bp · +
rbcL · NC_042796.1 · 54,967–56,427 bp · +
accD · NC_042796.1 · 57,185–58,687 bp · +
psaI · NC_042796.1 · 59,379–59,489 bp · +
ycf4 · NC_042796.1 · 59,923–60,477 bp · +
cemA · NC_042796.1 · 61,042–61,731 bp · +
petA · NC_042796.1 · 61,943–62,905 bp · +
petL · NC_042796.1 · 65,565–65,660 bp · +
petG · NC_042796.1 · 65,836–65,949 bp · +
psaJ · NC_042796.1 · 66,659–66,793 bp · +
rpl33 · NC_042796.1 · 67,265–67,465 bp · +
rps18 · NC_042796.1 · 67,639–67,944 bp · +
rps12 · NC_042796.1 · 138,405–139,198 bp · +
psbB · NC_042796.1 · 71,952–73,478 bp · +
psbT · NC_042796.1 · 73,659–73,766 bp · +
psbH · NC_042796.1 · 74,068–74,289 bp · +
petB · NC_042796.1 · 74,423–75,794 bp · +
petD · NC_042796.1 · 75,981–77,207 bp · +
ycf2 · NC_042796.1 · 85,770–92,624 bp · +
ycf15 · NC_042796.1 · 92,667–92,915 bp · +
trnV-GAC · NC_042796.1 · 99,227–99,298 bp · +
rrn16 · NC_042796.1 · 99,525–101,015 bp · +
trnI · NC_042796.1 · 101,306–102,312 bp · +
trnA-UGC · NC_042796.1 · 102,381–103,265 bp · +
rrn23 · NC_042796.1 · 103,450–106,266 bp · +
rrn4.5 · NC_042796.1 · 106,365–106,467 bp · +
rrn5 · NC_042796.1 · 106,719–106,839 bp · +
trnR-ACG · NC_042796.1 · 107,086–107,160 bp · +
rpl32 · NC_042796.1 · 111,910–112,089 bp · +
trnL-UAG · NC_042796.1 · 112,826–112,905 bp · +
ccsA · NC_042796.1 · 112,989–113,960 bp · +
trnN-GUU · NC_042796.1 · 128,222–128,295 bp · +
rps7 · NC_042796.1 · 139,252–139,719 bp · +
ndhB · NC_042796.1 · 139,994–142,205 bp · +
trnL-CAA · NC_042796.1 · 142,758–142,840 bp · +
trnM-CAU · NC_042796.1 · 150,334–150,408 bp · +
rpl23 · NC_042796.1 · 150,573–150,854 bp · +
rpl2 · NC_042796.1 · 150,873–152,364 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Pogostemon cablin
ANNOTATED PLASTOME
NC_042796.1
152,461 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38115 76230 114346 152461 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnC-ACA atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 287 1345 1059 Locate
trnK-UUU gene − 1577 4180 2604 Locate
matK gene − 1894 3429 1536 Locate
rps16 gene − 5070 6216 1147 Locate
trnQ-UUG gene − 7364 7435 72 Locate
psbK gene + 7762 7947 186 Locate
psbI gene + 8306 8416 111 Locate
trnS-GCU gene − 8541 8628 88 Locate
trnS-CGA gene + 9281 10038 758 Locate
trnR-UCU gene + 10234 10305 72 Locate
atpA gene − 10416 11939 1524 Locate
atpF gene − 12041 13319 1279 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14967 15710 744 Locate
rps2 gene − 15924 16634 711 Locate
rpoC2 gene − 16859 21013 4155 Locate
rpoC1 gene − 21168 23994 2827 Locate
rpoB gene − 24021 27233 3213 Locate
trnC-GCA gene + 28197 28267 71 Locate
petN gene + 28480 28569 90 Locate
psbM gene − 29533 29637 105 Locate
trnD-GUC gene − 30141 30217 77 Locate
trnY-GUA gene − 30324 30410 87 Locate
trnE-UUC gene − 30469 30541 73 Locate
trnT-GGU gene + 31092 31165 74 Locate
psbD gene + 32294 33355 1062 Locate
psbC gene + 33303 34724 1422 Locate
trnS-UGA gene − 34960 35052 93 Locate
psbZ gene + 35345 35533 189 Locate
trnG-GCC gene + 35803 35874 72 Locate
trnfM-CAU gene − 36035 36109 75 Locate
rps14 gene − 36259 36561 303 Locate
psaB gene − 36689 38893 2205 Locate
psaA gene − 38919 41171 2253 Locate
ycf3 gene − 41913 43847 1935 Locate
trnS-GGA gene + 44762 44848 87 Locate
rps4 gene − 45114 45719 606 Locate
trnT-UGU gene − 46086 46160 75 Locate
trnL-UAA gene + 46842 47413 572 Locate
trnF-GAA gene + 47731 47804 74 Locate
ndhJ gene − 48678 49154 477 Locate
ndhK gene − 49260 49937 678 Locate
ndhC gene − 49992 50354 363 Locate
trnC-ACA gene − 51146 51806 661 Locate
trnM-CAU gene + 51987 52059 73 Locate
atpE gene − 52283 52684 402 Locate
atpB gene − 52681 54177 1497 Locate
rbcL gene + 54967 56427 1461 Locate
accD gene + 57185 58687 1503 Locate
psaI gene + 59379 59489 111 Locate
ycf4 gene + 59923 60477 555 Locate
cemA gene + 61042 61731 690 Locate
petA gene + 61943 62905 963 Locate
psbJ gene − 63846 63968 123 Locate
psbL gene − 64111 64227 117 Locate
psbF gene − 64251 64370 120 Locate
psbE gene − 64385 64636 252 Locate
petL gene + 65565 65660 96 Locate
petG gene + 65836 65949 114 Locate
trnW-CCA gene − 66071 66144 74 Locate
trnP-UGG gene − 66316 66391 76 Locate
psaJ gene + 66659 66793 135 Locate
rpl33 gene + 67265 67465 201 Locate
rps18 gene + 67639 67944 306 Locate
rpl20 gene − 68159 68545 387 Locate
rps12 gene − 69303 69416 114 Locate
clpP gene − 69546 71503 1958 Locate
psbB gene + 71952 73478 1527 Locate
psbT gene + 73659 73766 108 Locate
psbN gene − 73833 73964 132 Locate
psbH gene + 74068 74289 222 Locate
petB gene + 74423 75794 1372 Locate
petD gene + 75981 77207 1227 Locate
rpoA gene − 77378 78400 1023 Locate
rps11 gene − 78472 78888 417 Locate
rpl36 gene − 78991 79104 114 Locate
infA gene − 79200 79433 234 Locate
rps8 gene − 79551 79964 414 Locate
rpl14 gene − 80143 80511 369 Locate
rpl16 gene − 80646 81996 1351 Locate
rps3 gene − 82140 82802 663 Locate
rpl22 gene − 82787 83257 471 Locate
rps19 gene − 83317 83595 279 Locate
rpl2 gene − 83651 85142 1492 Locate
rpl23 gene − 85161 85442 282 Locate
trnM-CAU gene − 85607 85681 75 Locate
ycf2 gene + 85770 92624 6855 Locate
ycf15 gene + 92667 92915 249 Locate
trnL-CAA gene − 93175 93257 83 Locate
ndhB gene − 93810 96021 2212 Locate
rps7 gene − 96296 96763 468 Locate
rps12 gene − 96817 97610 794 Locate
trnV-GAC gene + 99227 99298 72 Locate
rrn16 gene + 99525 101015 1491 Locate
trnI gene + 101306 102312 1007 Locate
trnA-UGC gene + 102381 103265 885 Locate
rrn23 gene + 103450 106266 2817 Locate
rrn4.5 gene + 106365 106467 103 Locate
rrn5 gene + 106719 106839 121 Locate
trnR-ACG gene + 107086 107160 75 Locate
trnN-GUU gene − 107720 107793 74 Locate
ndhF gene − 109178 111412 2235 Locate
rpl32 gene + 111910 112089 180 Locate
trnL-UAG gene + 112826 112905 80 Locate
ccsA gene + 112989 113960 972 Locate
ndhD gene − 114154 115674 1521 Locate
psaC gene − 115767 116012 246 Locate
ndhE gene − 116265 116570 306 Locate
ndhG gene − 116787 117317 531 Locate
ndhI gene − 117623 118129 507 Locate
ndhA gene − 118239 120388 2150 Locate
ndhH gene − 120390 121571 1182 Locate
rps15 gene − 121672 121944 273 Locate
ycf1 gene − 122345 127888 5544 Locate
trnN-GUU gene + 128222 128295 74 Locate
trnR-ACG gene − 128855 128929 75 Locate
rrn5 gene − 129176 129296 121 Locate
rrn4.5 gene − 129548 129650 103 Locate
rrn23 gene − 129749 132565 2817 Locate
trnA-UGC gene − 132750 133634 885 Locate
trnI gene − 133703 134709 1007 Locate
rrn16 gene − 135000 136490 1491 Locate
trnV-GAC gene − 136717 136788 72 Locate
rps12 gene + 138405 139198 794 Locate
rps7 gene + 139252 139719 468 Locate
ndhB gene + 139994 142205 2212 Locate
trnL-CAA gene + 142758 142840 83 Locate
ycf15 gene − 143100 143348 249 Locate
ycf2 gene − 143391 150245 6855 Locate
trnM-CAU gene + 150334 150408 75 Locate
rpl23 gene + 150573 150854 282 Locate
rpl2 gene + 150873 152364 1492 Locate
Status Available
Accession NC_042796.1
Length 152,461 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources