Pogostemon plectranthoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_065983.1 · 2–76 bp · −
psbA · NC_065983.1 · 275–1,333 bp · −
trnK-UUU · NC_065983.1 · 1,565–4,150 bp · −
matK · NC_065983.1 · 1,864–3,399 bp · −
rps16 · NC_065983.1 · 5,040–6,188 bp · −
trnQ-UUG · NC_065983.1 · 7,363–7,434 bp · −
trnS-GCU · NC_065983.1 · 8,533–8,620 bp · −
atpA · NC_065983.1 · 10,446–11,969 bp · −
atpF · NC_065983.1 · 12,067–13,334 bp · −
atpH · NC_065983.1 · 13,688–13,933 bp · −
atpI · NC_065983.1 · 14,952–15,695 bp · −
rps2 · NC_065983.1 · 15,909–16,619 bp · −
rpoC2 · NC_065983.1 · 16,842–20,996 bp · −
rpoC1 · NC_065983.1 · 21,151–23,992 bp · −
rpoB · NC_065983.1 · 24,019–27,231 bp · −
psbM · NC_065983.1 · 29,555–29,659 bp · −
trnD-GUC · NC_065983.1 · 30,167–30,243 bp · −
trnY-GUA · NC_065983.1 · 30,350–30,436 bp · −
trnE-UUC · NC_065983.1 · 30,495–30,567 bp · −
trnS-UGA · NC_065983.1 · 34,980–35,072 bp · −
trnfM-CAU · NC_065983.1 · 36,046–36,120 bp · −
rps14 · NC_065983.1 · 36,270–36,572 bp · −
psaB · NC_065983.1 · 36,700–38,904 bp · −
psaA · NC_065983.1 · 38,930–41,182 bp · −
ycf3 · NC_065983.1 · 41,930–43,866 bp · −
rps4 · NC_065983.1 · 45,097–45,702 bp · −
trnT-UGU · NC_065983.1 · 46,076–46,150 bp · −
ndhJ · NC_065983.1 · 48,652–49,128 bp · −
ndhK · NC_065983.1 · 49,234–49,911 bp · −
ndhC · NC_065983.1 · 49,966–50,328 bp · −
trnV · NC_065983.1 · 51,118–51,778 bp · −
atpE · NC_065983.1 · 52,255–52,656 bp · −
atpB · NC_065983.1 · 52,653–54,149 bp · −
psbJ · NC_065983.1 · 63,835–63,957 bp · −
psbL · NC_065983.1 · 64,100–64,216 bp · −
psbF · NC_065983.1 · 64,240–64,359 bp · −
psbE · NC_065983.1 · 64,374–64,625 bp · −
trnW-CCA · NC_065983.1 · 66,028–66,101 bp · −
trnP-UGG · NC_065983.1 · 66,273–66,348 bp · −
rpl20 · NC_065983.1 · 68,138–68,524 bp · −
rps12 · NC_065983.1 · 69,283–69,396 bp · −
rps12 · NC_065983.1 · 96,784–97,577 bp · −
clpP · NC_065983.1 · 69,528–71,481 bp · −
psbN · NC_065983.1 · 73,811–73,942 bp · −
rpoA · NC_065983.1 · 77,366–78,388 bp · −
rps11 · NC_065983.1 · 78,460–78,876 bp · −
rpl36 · NC_065983.1 · 78,979–79,092 bp · −
infA · NC_065983.1 · 79,188–79,421 bp · −
rps8 · NC_065983.1 · 79,540–79,953 bp · −
rpl14 · NC_065983.1 · 80,132–80,500 bp · −
rpl16 · NC_065983.1 · 80,630–81,956 bp · −
rps3 · NC_065983.1 · 82,101–82,763 bp · −
rpl22 · NC_065983.1 · 82,748–83,218 bp · −
rps19 · NC_065983.1 · 83,278–83,556 bp · −
rpl2 · NC_065983.1 · 83,611–85,102 bp · −
rpl23 · NC_065983.1 · 85,121–85,402 bp · −
trnM-CAU · NC_065983.1 · 85,567–85,641 bp · −
trnL-CAA · NC_065983.1 · 93,135–93,217 bp · −
ndhB · NC_065983.1 · 93,770–95,988 bp · −
rps7 · NC_065983.1 · 96,263–96,730 bp · −
trnN-GUU · NC_065983.1 · 107,687–107,760 bp · −
ndhF · NC_065983.1 · 109,158–111,374 bp · −
ndhD · NC_065983.1 · 114,131–115,651 bp · −
psaC · NC_065983.1 · 115,751–115,996 bp · −
ndhE · NC_065983.1 · 116,249–116,554 bp · −
ndhG · NC_065983.1 · 116,771–117,301 bp · −
ndhI · NC_065983.1 · 117,606–118,112 bp · −
ndhA · NC_065983.1 · 118,222–120,371 bp · −
ndhH · NC_065983.1 · 120,373–121,554 bp · −
rps15 · NC_065983.1 · 121,655–121,927 bp · −
ycf1 · NC_065983.1 · 122,311–127,851 bp · −
trnR-ACG · NC_065983.1 · 128,818–128,892 bp · −
rrn5 · NC_065983.1 · 129,139–129,259 bp · −
rrn4.5 · NC_065983.1 · 129,511–129,613 bp · −
rrn23 · NC_065983.1 · 129,712–132,528 bp · −
trnA-UGC · NC_065983.1 · 132,713–133,597 bp · −
trnI · NC_065983.1 · 133,666–134,672 bp · −
rrn16 · NC_065983.1 · 134,963–136,453 bp · −
trnV-GAC · NC_065983.1 · 136,680–136,751 bp · −
ycf15 · NC_065983.1 · 143,070–143,318 bp · −
ycf2 · NC_065983.1 · 143,361–150,215 bp · −
psbK · NC_065983.1 · 7,761–7,946 bp · +
psbI · NC_065983.1 · 8,309–8,419 bp · +
trnS-CGA · NC_065983.1 · 9,308–10,070 bp · +
trnR-UCU · NC_065983.1 · 10,264–10,335 bp · +
trnC-GCA · NC_065983.1 · 28,227–28,297 bp · +
petN · NC_065983.1 · 28,510–28,599 bp · +
trnT-GGU · NC_065983.1 · 31,118–31,191 bp · +
psbD · NC_065983.1 · 32,314–33,375 bp · +
psbC · NC_065983.1 · 33,323–34,744 bp · +
psbZ · NC_065983.1 · 35,365–35,553 bp · +
trnG-GCC · NC_065983.1 · 35,820–35,891 bp · +
trnS-GGA · NC_065983.1 · 44,745–44,831 bp · +
trnL-UAA · NC_065983.1 · 46,832–47,403 bp · +
trnF-GAA · NC_065983.1 · 47,720–47,793 bp · +
trnM-CAU · NC_065983.1 · 51,959–52,031 bp · +
rbcL · NC_065983.1 · 54,949–56,409 bp · +
accD · NC_065983.1 · 57,168–58,670 bp · +
psaI · NC_065983.1 · 59,364–59,474 bp · +
ycf4 · NC_065983.1 · 59,908–60,462 bp · +
cemA · NC_065983.1 · 61,027–61,716 bp · +
petA · NC_065983.1 · 61,928–62,890 bp · +
petL · NC_065983.1 · 65,554–65,649 bp · +
petG · NC_065983.1 · 65,825–65,938 bp · +
psaJ · NC_065983.1 · 66,634–66,768 bp · +
rpl33 · NC_065983.1 · 67,240–67,440 bp · +
rps18 · NC_065983.1 · 67,616–67,921 bp · +
rps12 · NC_065983.1 · 138,368–138,599 bp · +
rps12 · NC_065983.1 · 139,136–139,161 bp · +
psbB · NC_065983.1 · 71,930–73,456 bp · +
psbT · NC_065983.1 · 73,637–73,744 bp · +
psbH · NC_065983.1 · 74,046–74,267 bp · +
petB · NC_065983.1 · 74,401–75,782 bp · +
petD · NC_065983.1 · 75,969–77,195 bp · +
ycf2 · NC_065983.1 · 85,730–92,584 bp · +
ycf15 · NC_065983.1 · 92,627–92,875 bp · +
trnV-GAC · NC_065983.1 · 99,194–99,265 bp · +
rrn16 · NC_065983.1 · 99,492–100,982 bp · +
trnI · NC_065983.1 · 101,273–102,279 bp · +
trnA-UGC · NC_065983.1 · 102,348–103,232 bp · +
rrn23 · NC_065983.1 · 103,417–106,233 bp · +
rrn4.5 · NC_065983.1 · 106,332–106,434 bp · +
rrn5 · NC_065983.1 · 106,686–106,806 bp · +
trnR-ACG · NC_065983.1 · 107,053–107,127 bp · +
rpl32 · NC_065983.1 · 111,876–112,055 bp · +
trnL-UAG · NC_065983.1 · 112,785–112,864 bp · +
ccsA · NC_065983.1 · 112,948–113,919 bp · +
trnN-GUU · NC_065983.1 · 128,185–128,258 bp · +
rps7 · NC_065983.1 · 139,215–139,682 bp · +
ndhB · NC_065983.1 · 139,957–142,175 bp · +
trnL-CAA · NC_065983.1 · 142,728–142,810 bp · +
trnM-CAU · NC_065983.1 · 150,304–150,378 bp · +
rpl23 · NC_065983.1 · 150,543–150,824 bp · +
rpl2 · NC_065983.1 · 150,843–152,334 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Pogostemon plectranthoides
ANNOTATED PLASTOME
NC_065983.1
152,430 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38108 76215 114322 152430 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 275 1333 1059 Locate
trnK-UUU gene − 1565 4150 2586 Locate
matK gene − 1864 3399 1536 Locate
rps16 gene − 5040 6188 1149 Locate
trnQ-UUG gene − 7363 7434 72 Locate
psbK gene + 7761 7946 186 Locate
psbI gene + 8309 8419 111 Locate
trnS-GCU gene − 8533 8620 88 Locate
trnS-CGA gene + 9308 10070 763 Locate
trnR-UCU gene + 10264 10335 72 Locate
atpA gene − 10446 11969 1524 Locate
atpF gene − 12067 13334 1268 Locate
atpH gene − 13688 13933 246 Locate
atpI gene − 14952 15695 744 Locate
rps2 gene − 15909 16619 711 Locate
rpoC2 gene − 16842 20996 4155 Locate
rpoC1 gene − 21151 23992 2842 Locate
rpoB gene − 24019 27231 3213 Locate
trnC-GCA gene + 28227 28297 71 Locate
petN gene + 28510 28599 90 Locate
psbM gene − 29555 29659 105 Locate
trnD-GUC gene − 30167 30243 77 Locate
trnY-GUA gene − 30350 30436 87 Locate
trnE-UUC gene − 30495 30567 73 Locate
trnT-GGU gene + 31118 31191 74 Locate
psbD gene + 32314 33375 1062 Locate
psbC gene + 33323 34744 1422 Locate
trnS-UGA gene − 34980 35072 93 Locate
psbZ gene + 35365 35553 189 Locate
trnG-GCC gene + 35820 35891 72 Locate
trnfM-CAU gene − 36046 36120 75 Locate
rps14 gene − 36270 36572 303 Locate
psaB gene − 36700 38904 2205 Locate
psaA gene − 38930 41182 2253 Locate
ycf3 gene − 41930 43866 1937 Locate
trnS-GGA gene + 44745 44831 87 Locate
rps4 gene − 45097 45702 606 Locate
trnT-UGU gene − 46076 46150 75 Locate
trnL-UAA gene + 46832 47403 572 Locate
trnF-GAA gene + 47720 47793 74 Locate
ndhJ gene − 48652 49128 477 Locate
ndhK gene − 49234 49911 678 Locate
ndhC gene − 49966 50328 363 Locate
trnV gene − 51118 51778 661 Locate
trnM-CAU gene + 51959 52031 73 Locate
atpE gene − 52255 52656 402 Locate
atpB gene − 52653 54149 1497 Locate
rbcL gene + 54949 56409 1461 Locate
accD gene + 57168 58670 1503 Locate
psaI gene + 59364 59474 111 Locate
ycf4 gene + 59908 60462 555 Locate
cemA gene + 61027 61716 690 Locate
petA gene + 61928 62890 963 Locate
psbJ gene − 63835 63957 123 Locate
psbL gene − 64100 64216 117 Locate
psbF gene − 64240 64359 120 Locate
psbE gene − 64374 64625 252 Locate
petL gene + 65554 65649 96 Locate
petG gene + 65825 65938 114 Locate
trnW-CCA gene − 66028 66101 74 Locate
trnP-UGG gene − 66273 66348 76 Locate
psaJ gene + 66634 66768 135 Locate
rpl33 gene + 67240 67440 201 Locate
rps18 gene + 67616 67921 306 Locate
rpl20 gene − 68138 68524 387 Locate
rps12 gene − 69283 69396 114 Locate
clpP gene − 69528 71481 1954 Locate
psbB gene + 71930 73456 1527 Locate
psbT gene + 73637 73744 108 Locate
psbN gene − 73811 73942 132 Locate
psbH gene + 74046 74267 222 Locate
petB gene + 74401 75782 1382 Locate
petD gene + 75969 77195 1227 Locate
rpoA gene − 77366 78388 1023 Locate
rps11 gene − 78460 78876 417 Locate
rpl36 gene − 78979 79092 114 Locate
infA gene − 79188 79421 234 Locate
rps8 gene − 79540 79953 414 Locate
rpl14 gene − 80132 80500 369 Locate
rpl16 gene − 80630 81956 1327 Locate
rps3 gene − 82101 82763 663 Locate
rpl22 gene − 82748 83218 471 Locate
rps19 gene − 83278 83556 279 Locate
rpl2 gene − 83611 85102 1492 Locate
rpl23 gene − 85121 85402 282 Locate
trnM-CAU gene − 85567 85641 75 Locate
ycf2 gene + 85730 92584 6855 Locate
ycf15 gene + 92627 92875 249 Locate
trnL-CAA gene − 93135 93217 83 Locate
ndhB gene − 93770 95988 2219 Locate
rps7 gene − 96263 96730 468 Locate
rps12 gene − 96784 97577 794 Locate
trnV-GAC gene + 99194 99265 72 Locate
rrn16 gene + 99492 100982 1491 Locate
trnI gene + 101273 102279 1007 Locate
trnA-UGC gene + 102348 103232 885 Locate
rrn23 gene + 103417 106233 2817 Locate
rrn4.5 gene + 106332 106434 103 Locate
rrn5 gene + 106686 106806 121 Locate
trnR-ACG gene + 107053 107127 75 Locate
trnN-GUU gene − 107687 107760 74 Locate
ndhF gene − 109158 111374 2217 Locate
rpl32 gene + 111876 112055 180 Locate
trnL-UAG gene + 112785 112864 80 Locate
ccsA gene + 112948 113919 972 Locate
ndhD gene − 114131 115651 1521 Locate
psaC gene − 115751 115996 246 Locate
ndhE gene − 116249 116554 306 Locate
ndhG gene − 116771 117301 531 Locate
ndhI gene − 117606 118112 507 Locate
ndhA gene − 118222 120371 2150 Locate
ndhH gene − 120373 121554 1182 Locate
rps15 gene − 121655 121927 273 Locate
ycf1 gene − 122311 127851 5541 Locate
trnN-GUU gene + 128185 128258 74 Locate
trnR-ACG gene − 128818 128892 75 Locate
rrn5 gene − 129139 129259 121 Locate
rrn4.5 gene − 129511 129613 103 Locate
rrn23 gene − 129712 132528 2817 Locate
trnA-UGC gene − 132713 133597 885 Locate
trnI gene − 133666 134672 1007 Locate
rrn16 gene − 134963 136453 1491 Locate
trnV-GAC gene − 136680 136751 72 Locate
rps12 gene + 138368 138599 232 Locate
rps12 gene + 139136 139161 26 Locate
rps7 gene + 139215 139682 468 Locate
ndhB gene + 139957 142175 2219 Locate
trnL-CAA gene + 142728 142810 83 Locate
ycf15 gene − 143070 143318 249 Locate
ycf2 gene − 143361 150215 6855 Locate
trnM-CAU gene + 150304 150378 75 Locate
rpl23 gene + 150543 150824 282 Locate
rpl2 gene + 150843 152334 1492 Locate
Status Available
Accession NC_065983.1
Length 152,430 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources