Pogostemon septentrionalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_065984.1 · 2–76 bp · −
psbA · NC_065984.1 · 276–1,334 bp · −
trnK-UUU · NC_065984.1 · 1,584–4,177 bp · −
matK · NC_065984.1 · 1,890–3,425 bp · −
rps16 · NC_065984.1 · 5,070–6,216 bp · −
trnQ-UUG · NC_065984.1 · 7,401–7,472 bp · −
trnS-GCU · NC_065984.1 · 8,578–8,665 bp · −
atpA · NC_065984.1 · 10,469–11,992 bp · −
atpF · NC_065984.1 · 12,091–13,359 bp · −
atpH · NC_065984.1 · 13,719–13,964 bp · −
atpI · NC_065984.1 · 14,978–15,721 bp · −
rps2 · NC_065984.1 · 15,935–16,645 bp · −
rpoC2 · NC_065984.1 · 16,871–21,025 bp · −
rpoC1 · NC_065984.1 · 21,180–24,010 bp · −
rpoB · NC_065984.1 · 24,037–27,249 bp · −
psbM · NC_065984.1 · 29,594–29,698 bp · −
trnD-GUC · NC_065984.1 · 30,201–30,277 bp · −
trnY-GUA · NC_065984.1 · 30,383–30,469 bp · −
trnE-UUC · NC_065984.1 · 30,528–30,600 bp · −
trnS-UGA · NC_065984.1 · 35,008–35,100 bp · −
trnfM-CAU · NC_065984.1 · 36,076–36,150 bp · −
rps14 · NC_065984.1 · 36,300–36,602 bp · −
psaB · NC_065984.1 · 36,730–38,934 bp · −
psaA · NC_065984.1 · 38,960–41,212 bp · −
ycf3 · NC_065984.1 · 41,945–43,874 bp · −
rps4 · NC_065984.1 · 45,134–45,739 bp · −
trnT-UGU · NC_065984.1 · 46,111–46,185 bp · −
ndhJ · NC_065984.1 · 48,700–49,176 bp · −
ndhK · NC_065984.1 · 49,282–49,959 bp · −
ndhC · NC_065984.1 · 50,014–50,376 bp · −
trnV · NC_065984.1 · 51,164–51,824 bp · −
atpE · NC_065984.1 · 52,300–52,701 bp · −
atpB · NC_065984.1 · 52,698–54,194 bp · −
psbJ · NC_065984.1 · 63,902–64,024 bp · −
psbL · NC_065984.1 · 64,167–64,283 bp · −
psbF · NC_065984.1 · 64,307–64,426 bp · −
psbE · NC_065984.1 · 64,441–64,692 bp · −
trnW-CCA · NC_065984.1 · 66,128–66,201 bp · −
trnP-UGG · NC_065984.1 · 66,373–66,448 bp · −
rpl20 · NC_065984.1 · 68,218–68,604 bp · −
rps12 · NC_065984.1 · 69,363–69,476 bp · −
rps12 · NC_065984.1 · 96,879–97,672 bp · −
clpP · NC_065984.1 · 69,606–71,573 bp · −
psbN · NC_065984.1 · 73,903–74,034 bp · −
rpoA · NC_065984.1 · 77,467–78,489 bp · −
rps11 · NC_065984.1 · 78,561–78,977 bp · −
rpl36 · NC_065984.1 · 79,080–79,193 bp · −
infA · NC_065984.1 · 79,289–79,522 bp · −
rps8 · NC_065984.1 · 79,640–80,053 bp · −
rpl14 · NC_065984.1 · 80,232–80,600 bp · −
rpl16 · NC_065984.1 · 80,735–82,056 bp · −
rps3 · NC_065984.1 · 82,201–82,863 bp · −
rpl22 · NC_065984.1 · 82,848–83,318 bp · −
rps19 · NC_065984.1 · 83,378–83,656 bp · −
rpl2 · NC_065984.1 · 83,713–85,204 bp · −
rpl23 · NC_065984.1 · 85,223–85,504 bp · −
trnM-CAU · NC_065984.1 · 85,669–85,743 bp · −
trnL-CAA · NC_065984.1 · 93,237–93,319 bp · −
ndhB · NC_065984.1 · 93,872–96,083 bp · −
rps7 · NC_065984.1 · 96,358–96,825 bp · −
trnN-GUU · NC_065984.1 · 107,786–107,859 bp · −
ndhF · NC_065984.1 · 109,257–111,473 bp · −
ndhD · NC_065984.1 · 114,225–115,745 bp · −
psaC · NC_065984.1 · 115,841–116,086 bp · −
ndhE · NC_065984.1 · 116,339–116,644 bp · −
ndhG · NC_065984.1 · 116,850–117,380 bp · −
ndhI · NC_065984.1 · 117,685–118,191 bp · −
ndhA · NC_065984.1 · 118,301–120,450 bp · −
ndhH · NC_065984.1 · 120,452–121,633 bp · −
rps15 · NC_065984.1 · 121,734–122,006 bp · −
ycf1 · NC_065984.1 · 122,390–127,936 bp · −
trnR-ACG · NC_065984.1 · 128,903–128,977 bp · −
rrn5 · NC_065984.1 · 129,224–129,344 bp · −
rrn4.5 · NC_065984.1 · 129,596–129,698 bp · −
rrn23 · NC_065984.1 · 129,797–132,613 bp · −
trnA-UGC · NC_065984.1 · 132,798–133,682 bp · −
trnI · NC_065984.1 · 133,751–134,761 bp · −
rrn16 · NC_065984.1 · 135,052–136,542 bp · −
trnV-GAC · NC_065984.1 · 136,769–136,840 bp · −
ycf15 · NC_065984.1 · 143,152–143,400 bp · −
ycf2 · NC_065984.1 · 143,443–150,297 bp · −
psbK · NC_065984.1 · 7,799–7,984 bp · +
psbI · NC_065984.1 · 8,344–8,454 bp · +
trnS-CGA · NC_065984.1 · 9,334–10,094 bp · +
trnR-UCU · NC_065984.1 · 10,285–10,356 bp · +
trnC-GCA · NC_065984.1 · 28,239–28,309 bp · +
petN · NC_065984.1 · 28,522–28,611 bp · +
trnT-GGU · NC_065984.1 · 31,145–31,218 bp · +
psbD · NC_065984.1 · 32,342–33,403 bp · +
psbC · NC_065984.1 · 33,351–34,772 bp · +
psbZ · NC_065984.1 · 35,393–35,581 bp · +
trnG-GCC · NC_065984.1 · 35,850–35,921 bp · +
trnS-GGA · NC_065984.1 · 44,783–44,869 bp · +
trnL-UAA · NC_065984.1 · 46,867–47,438 bp · +
trnF-GAA · NC_065984.1 · 47,756–47,829 bp · +
trnM-CAU · NC_065984.1 · 52,005–52,077 bp · +
rbcL · NC_065984.1 · 54,984–56,444 bp · +
accD · NC_065984.1 · 57,203–58,720 bp · +
psaI · NC_065984.1 · 59,406–59,516 bp · +
ycf4 · NC_065984.1 · 59,953–60,507 bp · +
cemA · NC_065984.1 · 61,072–61,761 bp · +
petA · NC_065984.1 · 61,973–62,935 bp · +
petL · NC_065984.1 · 65,622–65,717 bp · +
petG · NC_065984.1 · 65,893–66,006 bp · +
psaJ · NC_065984.1 · 66,716–66,850 bp · +
rpl33 · NC_065984.1 · 67,322–67,522 bp · +
rps18 · NC_065984.1 · 67,696–68,001 bp · +
rps12 · NC_065984.1 · 138,457–139,250 bp · +
psbB · NC_065984.1 · 72,022–73,548 bp · +
psbT · NC_065984.1 · 73,729–73,836 bp · +
psbH · NC_065984.1 · 74,138–74,359 bp · +
petB · NC_065984.1 · 74,502–75,883 bp · +
petD · NC_065984.1 · 76,070–77,296 bp · +
ycf2 · NC_065984.1 · 85,832–92,686 bp · +
ycf15 · NC_065984.1 · 92,729–92,977 bp · +
trnV-GAC · NC_065984.1 · 99,289–99,360 bp · +
rrn16 · NC_065984.1 · 99,587–101,077 bp · +
trnI · NC_065984.1 · 101,368–102,378 bp · +
trnA-UGC · NC_065984.1 · 102,447–103,331 bp · +
rrn23 · NC_065984.1 · 103,516–106,332 bp · +
rrn4.5 · NC_065984.1 · 106,431–106,533 bp · +
rrn5 · NC_065984.1 · 106,785–106,905 bp · +
trnR-ACG · NC_065984.1 · 107,152–107,226 bp · +
rpl32 · NC_065984.1 · 111,975–112,154 bp · +
trnL-UAG · NC_065984.1 · 112,881–112,960 bp · +
ccsA · NC_065984.1 · 113,044–114,015 bp · +
trnN-GUU · NC_065984.1 · 128,270–128,343 bp · +
rps7 · NC_065984.1 · 139,304–139,771 bp · +
ndhB · NC_065984.1 · 140,046–142,257 bp · +
trnL-CAA · NC_065984.1 · 142,810–142,892 bp · +
trnM-CAU · NC_065984.1 · 150,386–150,460 bp · +
rpl23 · NC_065984.1 · 150,625–150,906 bp · +
rpl2 · NC_065984.1 · 150,925–152,416 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Pogostemon septentrionalis
ANNOTATED PLASTOME
NC_065984.1
152,514 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38128 76257 114386 152514 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 276 1334 1059 Locate
trnK-UUU gene − 1584 4177 2594 Locate
matK gene − 1890 3425 1536 Locate
rps16 gene − 5070 6216 1147 Locate
trnQ-UUG gene − 7401 7472 72 Locate
psbK gene + 7799 7984 186 Locate
psbI gene + 8344 8454 111 Locate
trnS-GCU gene − 8578 8665 88 Locate
trnS-CGA gene + 9334 10094 761 Locate
trnR-UCU gene + 10285 10356 72 Locate
atpA gene − 10469 11992 1524 Locate
atpF gene − 12091 13359 1269 Locate
atpH gene − 13719 13964 246 Locate
atpI gene − 14978 15721 744 Locate
rps2 gene − 15935 16645 711 Locate
rpoC2 gene − 16871 21025 4155 Locate
rpoC1 gene − 21180 24010 2831 Locate
rpoB gene − 24037 27249 3213 Locate
trnC-GCA gene + 28239 28309 71 Locate
petN gene + 28522 28611 90 Locate
psbM gene − 29594 29698 105 Locate
trnD-GUC gene − 30201 30277 77 Locate
trnY-GUA gene − 30383 30469 87 Locate
trnE-UUC gene − 30528 30600 73 Locate
trnT-GGU gene + 31145 31218 74 Locate
psbD gene + 32342 33403 1062 Locate
psbC gene + 33351 34772 1422 Locate
trnS-UGA gene − 35008 35100 93 Locate
psbZ gene + 35393 35581 189 Locate
trnG-GCC gene + 35850 35921 72 Locate
trnfM-CAU gene − 36076 36150 75 Locate
rps14 gene − 36300 36602 303 Locate
psaB gene − 36730 38934 2205 Locate
psaA gene − 38960 41212 2253 Locate
ycf3 gene − 41945 43874 1930 Locate
trnS-GGA gene + 44783 44869 87 Locate
rps4 gene − 45134 45739 606 Locate
trnT-UGU gene − 46111 46185 75 Locate
trnL-UAA gene + 46867 47438 572 Locate
trnF-GAA gene + 47756 47829 74 Locate
ndhJ gene − 48700 49176 477 Locate
ndhK gene − 49282 49959 678 Locate
ndhC gene − 50014 50376 363 Locate
trnV gene − 51164 51824 661 Locate
trnM-CAU gene + 52005 52077 73 Locate
atpE gene − 52300 52701 402 Locate
atpB gene − 52698 54194 1497 Locate
rbcL gene + 54984 56444 1461 Locate
accD gene + 57203 58720 1518 Locate
psaI gene + 59406 59516 111 Locate
ycf4 gene + 59953 60507 555 Locate
cemA gene + 61072 61761 690 Locate
petA gene + 61973 62935 963 Locate
psbJ gene − 63902 64024 123 Locate
psbL gene − 64167 64283 117 Locate
psbF gene − 64307 64426 120 Locate
psbE gene − 64441 64692 252 Locate
petL gene + 65622 65717 96 Locate
petG gene + 65893 66006 114 Locate
trnW-CCA gene − 66128 66201 74 Locate
trnP-UGG gene − 66373 66448 76 Locate
psaJ gene + 66716 66850 135 Locate
rpl33 gene + 67322 67522 201 Locate
rps18 gene + 67696 68001 306 Locate
rpl20 gene − 68218 68604 387 Locate
rps12 gene − 69363 69476 114 Locate
clpP gene − 69606 71573 1968 Locate
psbB gene + 72022 73548 1527 Locate
psbT gene + 73729 73836 108 Locate
psbN gene − 73903 74034 132 Locate
psbH gene + 74138 74359 222 Locate
petB gene + 74502 75883 1382 Locate
petD gene + 76070 77296 1227 Locate
rpoA gene − 77467 78489 1023 Locate
rps11 gene − 78561 78977 417 Locate
rpl36 gene − 79080 79193 114 Locate
infA gene − 79289 79522 234 Locate
rps8 gene − 79640 80053 414 Locate
rpl14 gene − 80232 80600 369 Locate
rpl16 gene − 80735 82056 1322 Locate
rps3 gene − 82201 82863 663 Locate
rpl22 gene − 82848 83318 471 Locate
rps19 gene − 83378 83656 279 Locate
rpl2 gene − 83713 85204 1492 Locate
rpl23 gene − 85223 85504 282 Locate
trnM-CAU gene − 85669 85743 75 Locate
ycf2 gene + 85832 92686 6855 Locate
ycf15 gene + 92729 92977 249 Locate
trnL-CAA gene − 93237 93319 83 Locate
ndhB gene − 93872 96083 2212 Locate
rps7 gene − 96358 96825 468 Locate
rps12 gene − 96879 97672 794 Locate
trnV-GAC gene + 99289 99360 72 Locate
rrn16 gene + 99587 101077 1491 Locate
trnI gene + 101368 102378 1011 Locate
trnA-UGC gene + 102447 103331 885 Locate
rrn23 gene + 103516 106332 2817 Locate
rrn4.5 gene + 106431 106533 103 Locate
rrn5 gene + 106785 106905 121 Locate
trnR-ACG gene + 107152 107226 75 Locate
trnN-GUU gene − 107786 107859 74 Locate
ndhF gene − 109257 111473 2217 Locate
rpl32 gene + 111975 112154 180 Locate
trnL-UAG gene + 112881 112960 80 Locate
ccsA gene + 113044 114015 972 Locate
ndhD gene − 114225 115745 1521 Locate
psaC gene − 115841 116086 246 Locate
ndhE gene − 116339 116644 306 Locate
ndhG gene − 116850 117380 531 Locate
ndhI gene − 117685 118191 507 Locate
ndhA gene − 118301 120450 2150 Locate
ndhH gene − 120452 121633 1182 Locate
rps15 gene − 121734 122006 273 Locate
ycf1 gene − 122390 127936 5547 Locate
trnN-GUU gene + 128270 128343 74 Locate
trnR-ACG gene − 128903 128977 75 Locate
rrn5 gene − 129224 129344 121 Locate
rrn4.5 gene − 129596 129698 103 Locate
rrn23 gene − 129797 132613 2817 Locate
trnA-UGC gene − 132798 133682 885 Locate
trnI gene − 133751 134761 1011 Locate
rrn16 gene − 135052 136542 1491 Locate
trnV-GAC gene − 136769 136840 72 Locate
rps12 gene + 138457 139250 794 Locate
rps7 gene + 139304 139771 468 Locate
ndhB gene + 140046 142257 2212 Locate
trnL-CAA gene + 142810 142892 83 Locate
ycf15 gene − 143152 143400 249 Locate
ycf2 gene − 143443 150297 6855 Locate
trnM-CAU gene + 150386 150460 75 Locate
rpl23 gene + 150625 150906 282 Locate
rpl2 gene + 150925 152416 1492 Locate
Status Available
Accession NC_065984.1
Length 152,514 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources