Salvia aethiopis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870855.1 · 11–84 bp · −
psbA · PV870855.1 · 396–1,454 bp · −
trnK-UUU · PV870855.1 · 1,686–4,275 bp · −
matK · PV870855.1 · 2,006–3,535 bp · −
rps16 · PV870855.1 · 4,829–5,924 bp · −
trnQ-UUG · PV870855.1 · 6,468–6,539 bp · −
trnS-GCU · PV870855.1 · 7,761–7,848 bp · −
atpA · PV870855.1 · 9,671–11,194 bp · −
atpF · PV870855.1 · 11,290–12,560 bp · −
atpH · PV870855.1 · 12,832–13,077 bp · −
atpI · PV870855.1 · 13,988–14,731 bp · −
rps2 · PV870855.1 · 14,956–15,666 bp · −
rpoC2 · PV870855.1 · 15,885–20,072 bp · −
rpoC1 · PV870855.1 · 20,237–23,042 bp · −
rpoB · PV870855.1 · 23,069–26,281 bp · −
psbM · PV870855.1 · 28,726–28,830 bp · −
trnD-GUC · PV870855.1 · 29,340–29,413 bp · −
trnY-GUA · PV870855.1 · 29,524–29,607 bp · −
trnE-UUC · PV870855.1 · 29,678–29,750 bp · −
trnS-UGA · PV870855.1 · 34,409–34,500 bp · −
trnfM-CAU · PV870855.1 · 35,540–35,613 bp · −
rps14 · PV870855.1 · 35,758–36,060 bp · −
psaB · PV870855.1 · 36,182–38,386 bp · −
psaA · PV870855.1 · 38,412–40,664 bp · −
ycf3 · PV870855.1 · 41,453–43,410 bp · −
rps4 · PV870855.1 · 44,615–45,220 bp · −
trnT-UGU · PV870855.1 · 45,571–45,643 bp · −
ndhJ · PV870855.1 · 47,902–48,378 bp · −
ndhK · PV870855.1 · 48,489–49,166 bp · −
ndhC · PV870855.1 · 49,218–49,580 bp · −
trnV-UAC · PV870855.1 · 50,545–51,193 bp · −
atpE · PV870855.1 · 51,652–52,053 bp · −
atpB · PV870855.1 · 52,050–53,546 bp · −
psbJ · PV870855.1 · 63,029–63,151 bp · −
psbL · PV870855.1 · 63,281–63,397 bp · −
psbF · PV870855.1 · 63,421–63,540 bp · −
psbE · PV870855.1 · 63,555–63,806 bp · −
trnW-CCA · PV870855.1 · 65,209–65,282 bp · −
trnP-UGG · PV870855.1 · 65,457–65,530 bp · −
rpl20 · PV870855.1 · 67,296–67,682 bp · −
rps12 · PV870855.1 · 68,476–68,589 bp · −
rps12 · PV870855.1 · 95,810–96,603 bp · −
clpP · PV870855.1 · 68,712–70,620 bp · −
psbN · PV870855.1 · 72,951–73,082 bp · −
rpoA · PV870855.1 · 76,462–77,469 bp · −
rps11 · PV870855.1 · 77,540–77,956 bp · −
rpl36 · PV870855.1 · 78,066–78,179 bp · −
infA · PV870855.1 · 78,275–78,508 bp · −
rps8 · PV870855.1 · 78,629–79,033 bp · −
rpl14 · PV870855.1 · 79,206–79,574 bp · −
rpl16 · PV870855.1 · 79,704–80,973 bp · −
rps3 · PV870855.1 · 81,116–81,778 bp · −
rpl22 · PV870855.1 · 81,763–82,230 bp · −
rps19 · PV870855.1 · 82,294–82,572 bp · −
rpl2 · PV870855.1 · 82,632–84,119 bp · −
rpl23 · PV870855.1 · 84,138–84,419 bp · −
trnI-CAU · PV870855.1 · 84,585–84,658 bp · −
trnL-CAA · PV870855.1 · 92,175–92,255 bp · −
ndhB · PV870855.1 · 92,807–95,014 bp · −
rps7 · PV870855.1 · 95,289–95,756 bp · −
trnN-GUU · PV870855.1 · 106,639–106,710 bp · −
ndhF · PV870855.1 · 108,058–110,289 bp · −
ndhD · PV870855.1 · 113,019–114,560 bp · −
psaC · PV870855.1 · 114,655–114,900 bp · −
ndhE · PV870855.1 · 115,151–115,456 bp · −
ndhG · PV870855.1 · 115,686–116,216 bp · −
ndhI · PV870855.1 · 116,590–117,096 bp · −
ndhA · PV870855.1 · 117,177–119,278 bp · −
ndhH · PV870855.1 · 119,280–120,461 bp · −
rps15 · PV870855.1 · 120,561–120,833 bp · −
ycf1 · PV870855.1 · 121,223–126,742 bp · −
trnR-ACG · PV870855.1 · 127,662–127,735 bp · −
rrn5S · PV870855.1 · 127,979–128,099 bp · −
rrn4.5S · PV870855.1 · 128,349–128,451 bp · −
rrn23S · PV870855.1 · 128,550–131,362 bp · −
trnA-UGC · PV870855.1 · 131,523–132,400 bp · −
trnI-GAU · PV870855.1 · 132,465–133,484 bp · −
rrn16S · PV870855.1 · 133,783–135,273 bp · −
trnV-GAC · PV870855.1 · 135,500–135,571 bp · −
ycf15 · PV870855.1 · 141,863–142,060 bp · −
ycf2 · PV870855.1 · 142,202–149,035 bp · −
psbK · PV870855.1 · 6,925–7,104 bp · +
psbI · PV870855.1 · 7,510–7,620 bp · +
trnG-UCC · PV870855.1 · 8,559–9,313 bp · +
trnR-UCU · PV870855.1 · 9,494–9,565 bp · +
trnC-GCA · PV870855.1 · 27,421–27,491 bp · +
petN · PV870855.1 · 27,655–27,744 bp · +
trnT-GGU · PV870855.1 · 30,318–30,389 bp · +
psbD · PV870855.1 · 31,732–32,793 bp · +
psbC · PV870855.1 · 32,741–34,162 bp · +
psbZ · PV870855.1 · 34,830–35,018 bp · +
trnG-GCC · PV870855.1 · 35,294–35,364 bp · +
trnS-GGA · PV870855.1 · 44,261–44,347 bp · +
trnL-UAA · PV870855.1 · 46,335–46,898 bp · +
trnF-GAA · PV870855.1 · 47,182–47,254 bp · +
trnM-CAU · PV870855.1 · 51,374–51,446 bp · +
rbcL · PV870855.1 · 54,345–55,778 bp · +
accD · PV870855.1 · 56,478–57,950 bp · +
psaI · PV870855.1 · 58,418–58,528 bp · +
ycf4 · PV870855.1 · 58,974–59,528 bp · +
cemA · PV870855.1 · 60,172–60,861 bp · +
petA · PV870855.1 · 61,070–62,032 bp · +
petL · PV870855.1 · 64,705–64,800 bp · +
petG · PV870855.1 · 64,980–65,093 bp · +
psaJ · PV870855.1 · 65,801–65,935 bp · +
rpl33 · PV870855.1 · 66,382–66,582 bp · +
rps18 · PV870855.1 · 66,753–67,058 bp · +
rps12 · PV870855.1 · 137,179–137,972 bp · +
psbB · PV870855.1 · 71,074–72,600 bp · +
psbT · PV870855.1 · 72,783–72,890 bp · +
psbH · PV870855.1 · 73,188–73,409 bp · +
petB · PV870855.1 · 73,535–74,907 bp · +
petD · PV870855.1 · 75,095–76,285 bp · +
ycf2 · PV870855.1 · 84,747–91,580 bp · +
ycf15 · PV870855.1 · 91,722–91,919 bp · +
trnV-GAC · PV870855.1 · 98,211–98,282 bp · +
rrn16S · PV870855.1 · 98,509–99,999 bp · +
trnI-GAU · PV870855.1 · 100,298–101,317 bp · +
trnA-UGC · PV870855.1 · 101,382–102,259 bp · +
rrn23S · PV870855.1 · 102,420–105,232 bp · +
rrn4.5S · PV870855.1 · 105,331–105,433 bp · +
rrn5S · PV870855.1 · 105,683–105,803 bp · +
trnR-ACG · PV870855.1 · 106,047–106,120 bp · +
rpl32 · PV870855.1 · 110,746–110,916 bp · +
trnL-UAG · PV870855.1 · 111,642–111,721 bp · +
ccsA · PV870855.1 · 111,819–112,790 bp · +
trnN-GUU · PV870855.1 · 127,072–127,143 bp · +
rps7 · PV870855.1 · 138,026–138,493 bp · +
ndhB · PV870855.1 · 138,768–140,975 bp · +
trnL-CAA · PV870855.1 · 141,527–141,607 bp · +
trnI-CAU · PV870855.1 · 149,124–149,197 bp · +
rpl23 · PV870855.1 · 149,363–149,644 bp · +
rpl2 · PV870855.1 · 149,663–151,150 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia aethiopis
ANNOTATED PLASTOME
PV870855.1
151,252 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37813 75626 113439 151252 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 396 1454 1059 Locate
trnK-UUU gene − 1686 4275 2590 Locate
matK gene − 2006 3535 1530 Locate
rps16 gene − 4829 5924 1096 Locate
trnQ-UUG gene − 6468 6539 72 Locate
psbK gene + 6925 7104 180 Locate
psbI gene + 7510 7620 111 Locate
trnS-GCU gene − 7761 7848 88 Locate
trnG-UCC gene + 8559 9313 755 Locate
trnR-UCU gene + 9494 9565 72 Locate
atpA gene − 9671 11194 1524 Locate
atpF gene − 11290 12560 1271 Locate
atpH gene − 12832 13077 246 Locate
atpI gene − 13988 14731 744 Locate
rps2 gene − 14956 15666 711 Locate
rpoC2 gene − 15885 20072 4188 Locate
rpoC1 gene − 20237 23042 2806 Locate
rpoB gene − 23069 26281 3213 Locate
trnC-GCA gene + 27421 27491 71 Locate
petN gene + 27655 27744 90 Locate
psbM gene − 28726 28830 105 Locate
trnD-GUC gene − 29340 29413 74 Locate
trnY-GUA gene − 29524 29607 84 Locate
trnE-UUC gene − 29678 29750 73 Locate
trnT-GGU gene + 30318 30389 72 Locate
psbD gene + 31732 32793 1062 Locate
psbC gene + 32741 34162 1422 Locate
trnS-UGA gene − 34409 34500 92 Locate
psbZ gene + 34830 35018 189 Locate
trnG-GCC gene + 35294 35364 71 Locate
trnfM-CAU gene − 35540 35613 74 Locate
rps14 gene − 35758 36060 303 Locate
psaB gene − 36182 38386 2205 Locate
psaA gene − 38412 40664 2253 Locate
ycf3 gene − 41453 43410 1958 Locate
trnS-GGA gene + 44261 44347 87 Locate
rps4 gene − 44615 45220 606 Locate
trnT-UGU gene − 45571 45643 73 Locate
trnL-UAA gene + 46335 46898 564 Locate
trnF-GAA gene + 47182 47254 73 Locate
ndhJ gene − 47902 48378 477 Locate
ndhK gene − 48489 49166 678 Locate
ndhC gene − 49218 49580 363 Locate
trnV-UAC gene − 50545 51193 649 Locate
trnM-CAU gene + 51374 51446 73 Locate
atpE gene − 51652 52053 402 Locate
atpB gene − 52050 53546 1497 Locate
rbcL gene + 54345 55778 1434 Locate
accD gene + 56478 57950 1473 Locate
psaI gene + 58418 58528 111 Locate
ycf4 gene + 58974 59528 555 Locate
cemA gene + 60172 60861 690 Locate
petA gene + 61070 62032 963 Locate
psbJ gene − 63029 63151 123 Locate
psbL gene − 63281 63397 117 Locate
psbF gene − 63421 63540 120 Locate
psbE gene − 63555 63806 252 Locate
petL gene + 64705 64800 96 Locate
petG gene + 64980 65093 114 Locate
trnW-CCA gene − 65209 65282 74 Locate
trnP-UGG gene − 65457 65530 74 Locate
psaJ gene + 65801 65935 135 Locate
rpl33 gene + 66382 66582 201 Locate
rps18 gene + 66753 67058 306 Locate
rpl20 gene − 67296 67682 387 Locate
rps12 gene − 68476 68589 114 Locate
clpP gene − 68712 70620 1909 Locate
psbB gene + 71074 72600 1527 Locate
psbT gene + 72783 72890 108 Locate
psbN gene − 72951 73082 132 Locate
psbH gene + 73188 73409 222 Locate
petB gene + 73535 74907 1373 Locate
petD gene + 75095 76285 1191 Locate
rpoA gene − 76462 77469 1008 Locate
rps11 gene − 77540 77956 417 Locate
rpl36 gene − 78066 78179 114 Locate
infA gene − 78275 78508 234 Locate
rps8 gene − 78629 79033 405 Locate
rpl14 gene − 79206 79574 369 Locate
rpl16 gene − 79704 80973 1270 Locate
rps3 gene − 81116 81778 663 Locate
rpl22 gene − 81763 82230 468 Locate
rps19 gene − 82294 82572 279 Locate
rpl2 gene − 82632 84119 1488 Locate
rpl23 gene − 84138 84419 282 Locate
trnI-CAU gene − 84585 84658 74 Locate
ycf2 gene + 84747 91580 6834 Locate
ycf15 gene + 91722 91919 198 Locate
trnL-CAA gene − 92175 92255 81 Locate
ndhB gene − 92807 95014 2208 Locate
rps7 gene − 95289 95756 468 Locate
rps12 gene − 95810 96603 794 Locate
trnV-GAC gene + 98211 98282 72 Locate
rrn16S gene + 98509 99999 1491 Locate
trnI-GAU gene + 100298 101317 1020 Locate
trnA-UGC gene + 101382 102259 878 Locate
rrn23S gene + 102420 105232 2813 Locate
rrn4.5S gene + 105331 105433 103 Locate
rrn5S gene + 105683 105803 121 Locate
trnR-ACG gene + 106047 106120 74 Locate
trnN-GUU gene − 106639 106710 72 Locate
ndhF gene − 108058 110289 2232 Locate
rpl32 gene + 110746 110916 171 Locate
trnL-UAG gene + 111642 111721 80 Locate
ccsA gene + 111819 112790 972 Locate
ndhD gene − 113019 114560 1542 Locate
psaC gene − 114655 114900 246 Locate
ndhE gene − 115151 115456 306 Locate
ndhG gene − 115686 116216 531 Locate
ndhI gene − 116590 117096 507 Locate
ndhA gene − 117177 119278 2102 Locate
ndhH gene − 119280 120461 1182 Locate
rps15 gene − 120561 120833 273 Locate
ycf1 gene − 121223 126742 5520 Locate
trnN-GUU gene + 127072 127143 72 Locate
trnR-ACG gene − 127662 127735 74 Locate
rrn5S gene − 127979 128099 121 Locate
rrn4.5S gene − 128349 128451 103 Locate
rrn23S gene − 128550 131362 2813 Locate
trnA-UGC gene − 131523 132400 878 Locate
trnI-GAU gene − 132465 133484 1020 Locate
rrn16S gene − 133783 135273 1491 Locate
trnV-GAC gene − 135500 135571 72 Locate
rps12 gene + 137179 137972 794 Locate
rps7 gene + 138026 138493 468 Locate
ndhB gene + 138768 140975 2208 Locate
trnL-CAA gene + 141527 141607 81 Locate
ycf15 gene − 141863 142060 198 Locate
ycf2 gene − 142202 149035 6834 Locate
trnI-CAU gene + 149124 149197 74 Locate
rpl23 gene + 149363 149644 282 Locate
rpl2 gene + 149663 151150 1488 Locate
Status Available
Accession PV870855.1
Length 151,252 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources