Salvia amarissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870856.1 · 2–75 bp · −
psbA · PV870856.1 · 390–1,448 bp · −
trnK-UUU · PV870856.1 · 1,680–4,245 bp · −
matK · PV870856.1 · 1,984–3,507 bp · −
rps16 · PV870856.1 · 4,816–5,920 bp · −
trnQ-UUG · PV870856.1 · 6,676–6,747 bp · −
trnS-GCU · PV870856.1 · 7,976–8,063 bp · −
atpA · PV870856.1 · 9,886–11,409 bp · −
atpF · PV870856.1 · 11,506–12,765 bp · −
atpH · PV870856.1 · 13,039–13,284 bp · −
atpI · PV870856.1 · 14,296–15,039 bp · −
rps2 · PV870856.1 · 15,268–15,978 bp · −
rpoC2 · PV870856.1 · 16,179–20,366 bp · −
rpoC1 · PV870856.1 · 20,533–23,344 bp · −
rpoB · PV870856.1 · 23,371–26,583 bp · −
psbM · PV870856.1 · 29,049–29,153 bp · −
trnD-GUC · PV870856.1 · 29,524–29,597 bp · −
trnY-GUA · PV870856.1 · 29,710–29,793 bp · −
trnE-UUC · PV870856.1 · 29,864–29,936 bp · −
trnS-UGA · PV870856.1 · 34,597–34,689 bp · −
trnfM-CAU · PV870856.1 · 35,710–35,783 bp · −
rps14 · PV870856.1 · 35,928–36,230 bp · −
psaB · PV870856.1 · 36,353–38,557 bp · −
psaA · PV870856.1 · 38,583–40,835 bp · −
ycf3 · PV870856.1 · 41,571–43,504 bp · −
rps4 · PV870856.1 · 44,684–45,289 bp · −
trnT-UGU · PV870856.1 · 45,641–45,713 bp · −
ndhJ · PV870856.1 · 47,783–48,259 bp · −
ndhK · PV870856.1 · 48,370–49,047 bp · −
ndhC · PV870856.1 · 49,099–49,461 bp · −
trnV-UAC · PV870856.1 · 50,266–50,911 bp · −
atpE · PV870856.1 · 51,354–51,755 bp · −
atpB · PV870856.1 · 51,752–53,248 bp · −
psbJ · PV870856.1 · 62,680–62,802 bp · −
psbL · PV870856.1 · 62,932–63,048 bp · −
psbF · PV870856.1 · 63,072–63,191 bp · −
psbE · PV870856.1 · 63,206–63,457 bp · −
trnW-CCA · PV870856.1 · 64,853–64,926 bp · −
trnP-UGG · PV870856.1 · 65,100–65,173 bp · −
rpl20 · PV870856.1 · 66,939–67,325 bp · −
rps12 · PV870856.1 · 68,135–68,248 bp · −
rps12 · PV870856.1 · 95,526–96,319 bp · −
clpP · PV870856.1 · 68,372–70,281 bp · −
psbN · PV870856.1 · 72,610–72,741 bp · −
rpoA · PV870856.1 · 76,114–77,124 bp · −
rps11 · PV870856.1 · 77,194–77,610 bp · −
rpl36 · PV870856.1 · 77,723–77,836 bp · −
infA · PV870856.1 · 77,949–78,182 bp · −
rps8 · PV870856.1 · 78,304–78,708 bp · −
rpl14 · PV870856.1 · 78,884–79,252 bp · −
rpl16 · PV870856.1 · 79,383–80,658 bp · −
rps3 · PV870856.1 · 80,801–81,463 bp · −
rpl22 · PV870856.1 · 81,448–81,915 bp · −
rps19 · PV870856.1 · 81,985–82,263 bp · −
rpl2 · PV870856.1 · 82,325–83,816 bp · −
rpl23 · PV870856.1 · 83,835–84,116 bp · −
trnI-CAU · PV870856.1 · 84,282–84,355 bp · −
trnL-CAA · PV870856.1 · 91,883–91,963 bp · −
ndhB · PV870856.1 · 92,523–94,676 bp · −
rps7 · PV870856.1 · 95,005–95,472 bp · −
trnN-GUU · PV870856.1 · 106,393–106,464 bp · −
ndhF · PV870856.1 · 107,812–110,043 bp · −
ndhD · PV870856.1 · 112,708–114,249 bp · −
psaC · PV870856.1 · 114,346–114,591 bp · −
ndhE · PV870856.1 · 114,843–115,148 bp · −
ndhG · PV870856.1 · 115,363–115,893 bp · −
ndhI · PV870856.1 · 116,262–116,768 bp · −
ndhA · PV870856.1 · 116,849–118,950 bp · −
ndhH · PV870856.1 · 118,952–120,133 bp · −
rps15 · PV870856.1 · 120,233–120,505 bp · −
ycf1 · PV870856.1 · 120,912–126,485 bp · −
trnR-ACG · PV870856.1 · 127,389–127,462 bp · −
rrn5S · PV870856.1 · 127,706–127,826 bp · −
rrn4.5S · PV870856.1 · 128,082–128,184 bp · −
rrn23S · PV870856.1 · 128,283–131,093 bp · −
trnA-UGC · PV870856.1 · 131,259–132,135 bp · −
trnI-GAU · PV870856.1 · 132,200–133,217 bp · −
rrn16S · PV870856.1 · 133,516–135,006 bp · −
trnV-GAC · PV870856.1 · 135,233–135,304 bp · −
ycf15 · PV870856.1 · 141,657–141,854 bp · −
ycf2 · PV870856.1 · 141,996–148,835 bp · −
psbK · PV870856.1 · 7,137–7,322 bp · +
psbI · PV870856.1 · 7,716–7,826 bp · +
trnG-UCC · PV870856.1 · 8,767–9,527 bp · +
trnR-UCU · PV870856.1 · 9,704–9,775 bp · +
trnC-GCA · PV870856.1 · 27,751–27,821 bp · +
petN · PV870856.1 · 27,977–28,066 bp · +
trnT-GGU · PV870856.1 · 30,484–30,555 bp · +
psbD · PV870856.1 · 31,928–32,989 bp · +
psbC · PV870856.1 · 32,937–34,358 bp · +
psbZ · PV870856.1 · 35,017–35,205 bp · +
trnG-GCC · PV870856.1 · 35,483–35,553 bp · +
trnS-GGA · PV870856.1 · 44,325–44,411 bp · +
trnL-UAA · PV870856.1 · 46,372–46,946 bp · +
trnF-GAA · PV870856.1 · 47,234–47,306 bp · +
trnM-CAU · PV870856.1 · 51,092–51,164 bp · +
rbcL · PV870856.1 · 54,050–55,483 bp · +
accD · PV870856.1 · 56,524–57,582 bp · +
psaI · PV870856.1 · 58,046–58,156 bp · +
ycf4 · PV870856.1 · 58,601–59,155 bp · +
cemA · PV870856.1 · 59,797–60,486 bp · +
petA · PV870856.1 · 60,708–61,670 bp · +
petL · PV870856.1 · 64,351–64,446 bp · +
petG · PV870856.1 · 64,625–64,738 bp · +
psaJ · PV870856.1 · 65,452–65,586 bp · +
rpl33 · PV870856.1 · 66,025–66,225 bp · +
rps18 · PV870856.1 · 66,398–66,703 bp · +
rps12 · PV870856.1 · 136,960–137,753 bp · +
psbB · PV870856.1 · 70,726–72,252 bp · +
psbT · PV870856.1 · 72,443–72,544 bp · +
psbH · PV870856.1 · 72,847–73,068 bp · +
petB · PV870856.1 · 73,202–74,566 bp · +
petD · PV870856.1 · 74,754–75,937 bp · +
ycf2 · PV870856.1 · 84,444–91,283 bp · +
ycf15 · PV870856.1 · 91,425–91,622 bp · +
trnV-GAC · PV870856.1 · 97,975–98,046 bp · +
rrn16S · PV870856.1 · 98,273–99,763 bp · +
trnI-GAU · PV870856.1 · 100,062–101,079 bp · +
trnA-UGC · PV870856.1 · 101,144–102,020 bp · +
rrn23S · PV870856.1 · 102,186–104,996 bp · +
rrn4.5S · PV870856.1 · 105,095–105,197 bp · +
rrn5S · PV870856.1 · 105,453–105,573 bp · +
trnR-ACG · PV870856.1 · 105,817–105,890 bp · +
rpl32 · PV870856.1 · 110,499–110,669 bp · +
trnL-UAG · PV870856.1 · 111,320–111,399 bp · +
ccsA · PV870856.1 · 111,496–112,467 bp · +
trnN-GUU · PV870856.1 · 126,815–126,886 bp · +
rps7 · PV870856.1 · 137,807–138,274 bp · +
ndhB · PV870856.1 · 138,603–140,756 bp · +
trnL-CAA · PV870856.1 · 141,316–141,396 bp · +
trnI-CAU · PV870856.1 · 148,924–148,997 bp · +
rpl23 · PV870856.1 · 149,163–149,444 bp · +
rpl2 · PV870856.1 · 149,463–150,954 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia amarissima
ANNOTATED PLASTOME
PV870856.1
151,039 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37760 75520 113279 151039 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 390 1448 1059 Locate
trnK-UUU gene − 1680 4245 2566 Locate
matK gene − 1984 3507 1524 Locate
rps16 gene − 4816 5920 1105 Locate
trnQ-UUG gene − 6676 6747 72 Locate
psbK gene + 7137 7322 186 Locate
psbI gene + 7716 7826 111 Locate
trnS-GCU gene − 7976 8063 88 Locate
trnG-UCC gene + 8767 9527 761 Locate
trnR-UCU gene + 9704 9775 72 Locate
atpA gene − 9886 11409 1524 Locate
atpF gene − 11506 12765 1260 Locate
atpH gene − 13039 13284 246 Locate
atpI gene − 14296 15039 744 Locate
rps2 gene − 15268 15978 711 Locate
rpoC2 gene − 16179 20366 4188 Locate
rpoC1 gene − 20533 23344 2812 Locate
rpoB gene − 23371 26583 3213 Locate
trnC-GCA gene + 27751 27821 71 Locate
petN gene + 27977 28066 90 Locate
psbM gene − 29049 29153 105 Locate
trnD-GUC gene − 29524 29597 74 Locate
trnY-GUA gene − 29710 29793 84 Locate
trnE-UUC gene − 29864 29936 73 Locate
trnT-GGU gene + 30484 30555 72 Locate
psbD gene + 31928 32989 1062 Locate
psbC gene + 32937 34358 1422 Locate
trnS-UGA gene − 34597 34689 93 Locate
psbZ gene + 35017 35205 189 Locate
trnG-GCC gene + 35483 35553 71 Locate
trnfM-CAU gene − 35710 35783 74 Locate
rps14 gene − 35928 36230 303 Locate
psaB gene − 36353 38557 2205 Locate
psaA gene − 38583 40835 2253 Locate
ycf3 gene − 41571 43504 1934 Locate
trnS-GGA gene + 44325 44411 87 Locate
rps4 gene − 44684 45289 606 Locate
trnT-UGU gene − 45641 45713 73 Locate
trnL-UAA gene + 46372 46946 575 Locate
trnF-GAA gene + 47234 47306 73 Locate
ndhJ gene − 47783 48259 477 Locate
ndhK gene − 48370 49047 678 Locate
ndhC gene − 49099 49461 363 Locate
trnV-UAC gene − 50266 50911 646 Locate
trnM-CAU gene + 51092 51164 73 Locate
atpE gene − 51354 51755 402 Locate
atpB gene − 51752 53248 1497 Locate
rbcL gene + 54050 55483 1434 Locate
accD gene + 56524 57582 1059 Locate
psaI gene + 58046 58156 111 Locate
ycf4 gene + 58601 59155 555 Locate
cemA gene + 59797 60486 690 Locate
petA gene + 60708 61670 963 Locate
psbJ gene − 62680 62802 123 Locate
psbL gene − 62932 63048 117 Locate
psbF gene − 63072 63191 120 Locate
psbE gene − 63206 63457 252 Locate
petL gene + 64351 64446 96 Locate
petG gene + 64625 64738 114 Locate
trnW-CCA gene − 64853 64926 74 Locate
trnP-UGG gene − 65100 65173 74 Locate
psaJ gene + 65452 65586 135 Locate
rpl33 gene + 66025 66225 201 Locate
rps18 gene + 66398 66703 306 Locate
rpl20 gene − 66939 67325 387 Locate
rps12 gene − 68135 68248 114 Locate
clpP gene − 68372 70281 1910 Locate
psbB gene + 70726 72252 1527 Locate
psbT gene + 72443 72544 102 Locate
psbN gene − 72610 72741 132 Locate
psbH gene + 72847 73068 222 Locate
petB gene + 73202 74566 1365 Locate
petD gene + 74754 75937 1184 Locate
rpoA gene − 76114 77124 1011 Locate
rps11 gene − 77194 77610 417 Locate
rpl36 gene − 77723 77836 114 Locate
infA gene − 77949 78182 234 Locate
rps8 gene − 78304 78708 405 Locate
rpl14 gene − 78884 79252 369 Locate
rpl16 gene − 79383 80658 1276 Locate
rps3 gene − 80801 81463 663 Locate
rpl22 gene − 81448 81915 468 Locate
rps19 gene − 81985 82263 279 Locate
rpl2 gene − 82325 83816 1492 Locate
rpl23 gene − 83835 84116 282 Locate
trnI-CAU gene − 84282 84355 74 Locate
ycf2 gene + 84444 91283 6840 Locate
ycf15 gene + 91425 91622 198 Locate
trnL-CAA gene − 91883 91963 81 Locate
ndhB gene − 92523 94676 2154 Locate
rps7 gene − 95005 95472 468 Locate
rps12 gene − 95526 96319 794 Locate
trnV-GAC gene + 97975 98046 72 Locate
rrn16S gene + 98273 99763 1491 Locate
trnI-GAU gene + 100062 101079 1018 Locate
trnA-UGC gene + 101144 102020 877 Locate
rrn23S gene + 102186 104996 2811 Locate
rrn4.5S gene + 105095 105197 103 Locate
rrn5S gene + 105453 105573 121 Locate
trnR-ACG gene + 105817 105890 74 Locate
trnN-GUU gene − 106393 106464 72 Locate
ndhF gene − 107812 110043 2232 Locate
rpl32 gene + 110499 110669 171 Locate
trnL-UAG gene + 111320 111399 80 Locate
ccsA gene + 111496 112467 972 Locate
ndhD gene − 112708 114249 1542 Locate
psaC gene − 114346 114591 246 Locate
ndhE gene − 114843 115148 306 Locate
ndhG gene − 115363 115893 531 Locate
ndhI gene − 116262 116768 507 Locate
ndhA gene − 116849 118950 2102 Locate
ndhH gene − 118952 120133 1182 Locate
rps15 gene − 120233 120505 273 Locate
ycf1 gene − 120912 126485 5574 Locate
trnN-GUU gene + 126815 126886 72 Locate
trnR-ACG gene − 127389 127462 74 Locate
rrn5S gene − 127706 127826 121 Locate
rrn4.5S gene − 128082 128184 103 Locate
rrn23S gene − 128283 131093 2811 Locate
trnA-UGC gene − 131259 132135 877 Locate
trnI-GAU gene − 132200 133217 1018 Locate
rrn16S gene − 133516 135006 1491 Locate
trnV-GAC gene − 135233 135304 72 Locate
rps12 gene + 136960 137753 794 Locate
rps7 gene + 137807 138274 468 Locate
ndhB gene + 138603 140756 2154 Locate
trnL-CAA gene + 141316 141396 81 Locate
ycf15 gene − 141657 141854 198 Locate
ycf2 gene − 141996 148835 6840 Locate
trnI-CAU gene + 148924 148997 74 Locate
rpl23 gene + 149163 149444 282 Locate
rpl2 gene + 149463 150954 1492 Locate
Status Available
Accession PV870856.1
Length 151,039 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources