Salvia brandegeei chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PX971244.1 · 2–75 bp · −
psbA · PX971244.1 · 395–1,453 bp · −
trnK-UUU · PX971244.1 · 1,680–4,259 bp · −
matK · PX971244.1 · 1,992–3,521 bp · −
rps16 · PX971244.1 · 4,819–5,916 bp · −
trnQ-UUG · PX971244.1 · 6,474–6,545 bp · −
trnS-GCU · PX971244.1 · 7,783–7,870 bp · −
atpA · PX971244.1 · 9,678–11,201 bp · −
atpF · PX971244.1 · 11,303–12,545 bp · −
atpH · PX971244.1 · 12,818–13,063 bp · −
atpI · PX971244.1 · 14,093–14,836 bp · −
rps2 · PX971244.1 · 15,061–15,771 bp · −
rpoC2 · PX971244.1 · 15,973–20,160 bp · −
rpoC1 · PX971244.1 · 20,325–23,139 bp · −
rpoB · PX971244.1 · 23,166–26,378 bp · −
psbM · PX971244.1 · 28,868–28,972 bp · −
trnD-GUC · PX971244.1 · 29,488–29,561 bp · −
trnY-GUA · PX971244.1 · 29,672–29,755 bp · −
trnE-UUC · PX971244.1 · 29,827–29,899 bp · −
trnS-UGA · PX971244.1 · 34,574–34,666 bp · −
trnM-CAU · PX971244.1 · 35,682–35,755 bp · −
rps14 · PX971244.1 · 35,900–36,202 bp · −
psaB · PX971244.1 · 36,325–38,529 bp · −
psaA · PX971244.1 · 38,555–40,807 bp · −
ycf3 · PX971244.1 · 41,578–43,523 bp · −
rps4 · PX971244.1 · 44,708–45,313 bp · −
trnT-UGU · PX971244.1 · 45,674–45,746 bp · −
ndhJ · PX971244.1 · 47,914–48,390 bp · −
ndhK · PX971244.1 · 48,501–49,178 bp · −
ndhC · PX971244.1 · 49,230–49,592 bp · −
trnV-UAC · PX971244.1 · 50,539–51,180 bp · −
atpE · PX971244.1 · 51,643–52,044 bp · −
atpB · PX971244.1 · 52,041–53,537 bp · −
psbJ · PX971244.1 · 63,063–63,185 bp · −
psbL · PX971244.1 · 63,320–63,436 bp · −
psbF · PX971244.1 · 63,460–63,579 bp · −
psbE · PX971244.1 · 63,594–63,845 bp · −
trnW-CCA · PX971244.1 · 65,165–65,238 bp · −
trnP-UGG · PX971244.1 · 65,413–65,486 bp · −
rpl20 · PX971244.1 · 67,259–67,645 bp · −
rps12 · PX971244.1 · 68,447–68,560 bp · −
rps12 · PX971244.1 · 95,835–96,628 bp · −
clpP · PX971244.1 · 68,684–70,594 bp · −
psbN · PX971244.1 · 72,907–73,038 bp · −
rpoA · PX971244.1 · 76,437–77,444 bp · −
rps11 · PX971244.1 · 77,515–77,931 bp · −
rpl36 · PX971244.1 · 78,042–78,155 bp · −
infA · PX971244.1 · 78,255–78,488 bp · −
rps8 · PX971244.1 · 78,608–79,012 bp · −
rpl14 · PX971244.1 · 79,193–79,561 bp · −
rpl16 · PX971244.1 · 79,693–80,962 bp · −
rps3 · PX971244.1 · 81,105–81,767 bp · −
rpl22 · PX971244.1 · 81,752–82,219 bp · −
rps19 · PX971244.1 · 82,289–82,567 bp · −
rpl2 · PX971244.1 · 82,627–84,112 bp · −
rpl23 · PX971244.1 · 84,131–84,412 bp · −
trnI-CAU · PX971244.1 · 84,578–84,651 bp · −
trnL-CAA · PX971244.1 · 92,197–92,277 bp · −
ndhB · PX971244.1 · 92,838–94,985 bp · −
rps7 · PX971244.1 · 95,314–95,781 bp · −
trnN-GUU · PX971244.1 · 106,679–106,750 bp · −
ndhF · PX971244.1 · 108,098–110,329 bp · −
ndhD · PX971244.1 · 113,029–114,570 bp · −
psaC · PX971244.1 · 114,665–114,910 bp · −
ndhE · PX971244.1 · 115,161–115,466 bp · −
ndhG · PX971244.1 · 115,679–116,209 bp · −
ndhI · PX971244.1 · 116,589–117,095 bp · −
ndhA · PX971244.1 · 117,177–119,281 bp · −
ndhH · PX971244.1 · 119,283–120,464 bp · −
rps15 · PX971244.1 · 120,564–120,836 bp · −
ycf1 · PX971244.1 · 121,254–126,785 bp · −
trnR-ACG · PX971244.1 · 127,689–127,762 bp · −
rrn5S · PX971244.1 · 128,006–128,126 bp · −
rrn4.5S · PX971244.1 · 128,382–128,484 bp · −
rrn23S · PX971244.1 · 128,583–131,393 bp · −
trnA-UGC · PX971244.1 · 131,553–132,429 bp · −
trnI-GAU · PX971244.1 · 132,494–133,512 bp · −
rrn16S · PX971244.1 · 133,811–135,301 bp · −
trnV-GAC · PX971244.1 · 135,528–135,599 bp · −
ycf15 · PX971244.1 · 141,929–142,126 bp · −
ycf2 · PX971244.1 · 142,268–149,125 bp · −
psbK · PX971244.1 · 6,932–7,117 bp · +
psbI · PX971244.1 · 7,519–7,629 bp · +
trnG-UCC · PX971244.1 · 8,564–9,318 bp · +
trnR-UCU · PX971244.1 · 9,499–9,570 bp · +
trnC-GCA · PX971244.1 · 27,550–27,620 bp · +
petN · PX971244.1 · 27,776–27,865 bp · +
trnT-GGU · PX971244.1 · 30,458–30,529 bp · +
psbD · PX971244.1 · 31,895–32,956 bp · +
psbC · PX971244.1 · 32,904–34,325 bp · +
psbZ · PX971244.1 · 34,994–35,182 bp · +
trnG-GCC · PX971244.1 · 35,460–35,530 bp · +
trnS-GGA · PX971244.1 · 44,348–44,434 bp · +
trnL-UAA · PX971244.1 · 46,422–47,005 bp · +
trnF-GAA · PX971244.1 · 47,308–47,380 bp · +
trnM-CAU · PX971244.1 · 51,361–51,433 bp · +
rbcL · PX971244.1 · 54,330–55,763 bp · +
accD · PX971244.1 · 56,463–57,944 bp · +
psaI · PX971244.1 · 58,386–58,496 bp · +
ycf4 · PX971244.1 · 58,942–59,496 bp · +
cemA · PX971244.1 · 60,146–60,835 bp · +
petA · PX971244.1 · 61,061–62,023 bp · +
petL · PX971244.1 · 64,663–64,758 bp · +
petG · PX971244.1 · 64,937–65,050 bp · +
psaJ · PX971244.1 · 65,771–65,905 bp · +
rpl33 · PX971244.1 · 66,346–66,546 bp · +
rps18 · PX971244.1 · 66,719–67,024 bp · +
rps12 · PX971244.1 · 137,237–138,030 bp · +
psbB · PX971244.1 · 71,032–72,558 bp · +
psbT · PX971244.1 · 72,740–72,841 bp · +
psbH · PX971244.1 · 73,144–73,365 bp · +
petB · PX971244.1 · 73,491–74,882 bp · +
petD · PX971244.1 · 75,070–76,260 bp · +
ycf2 · PX971244.1 · 84,740–91,597 bp · +
ycf15 · PX971244.1 · 91,739–91,936 bp · +
trnV-GAC · PX971244.1 · 98,266–98,337 bp · +
rrn16S · PX971244.1 · 98,564–100,054 bp · +
trnI-GAU · PX971244.1 · 100,353–101,371 bp · +
trnA-UGC · PX971244.1 · 101,436–102,312 bp · +
rrn23S · PX971244.1 · 102,472–105,282 bp · +
rrn4.5S · PX971244.1 · 105,381–105,483 bp · +
rrn5S · PX971244.1 · 105,739–105,859 bp · +
trnR-ACG · PX971244.1 · 106,103–106,176 bp · +
rpl32 · PX971244.1 · 110,763–110,933 bp · +
trnL-UAG · PX971244.1 · 111,670–111,749 bp · +
ccsA · PX971244.1 · 111,846–112,823 bp · +
trnN-GUU · PX971244.1 · 127,115–127,186 bp · +
rps7 · PX971244.1 · 138,084–138,551 bp · +
ndhB · PX971244.1 · 138,880–141,027 bp · +
trnL-CAA · PX971244.1 · 141,588–141,668 bp · +
trnI-CAU · PX971244.1 · 149,214–149,287 bp · +
rpl23 · PX971244.1 · 149,453–149,734 bp · +
rpl2 · PX971244.1 · 149,753–151,238 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia brandegeei
ANNOTATED PLASTOME
PX971244.1
151,340 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37835 75670 113505 151340 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1680 4259 2580 Locate
matK gene − 1992 3521 1530 Locate
rps16 gene − 4819 5916 1098 Locate
trnQ-UUG gene − 6474 6545 72 Locate
psbK gene + 6932 7117 186 Locate
psbI gene + 7519 7629 111 Locate
trnS-GCU gene − 7783 7870 88 Locate
trnG-UCC gene + 8564 9318 755 Locate
trnR-UCU gene + 9499 9570 72 Locate
atpA gene − 9678 11201 1524 Locate
atpF gene − 11303 12545 1243 Locate
atpH gene − 12818 13063 246 Locate
atpI gene − 14093 14836 744 Locate
rps2 gene − 15061 15771 711 Locate
rpoC2 gene − 15973 20160 4188 Locate
rpoC1 gene − 20325 23139 2815 Locate
rpoB gene − 23166 26378 3213 Locate
trnC-GCA gene + 27550 27620 71 Locate
petN gene + 27776 27865 90 Locate
psbM gene − 28868 28972 105 Locate
trnD-GUC gene − 29488 29561 74 Locate
trnY-GUA gene − 29672 29755 84 Locate
trnE-UUC gene − 29827 29899 73 Locate
trnT-GGU gene + 30458 30529 72 Locate
psbD gene + 31895 32956 1062 Locate
psbC gene + 32904 34325 1422 Locate
trnS-UGA gene − 34574 34666 93 Locate
psbZ gene + 34994 35182 189 Locate
trnG-GCC gene + 35460 35530 71 Locate
trnM-CAU gene − 35682 35755 74 Locate
rps14 gene − 35900 36202 303 Locate
psaB gene − 36325 38529 2205 Locate
psaA gene − 38555 40807 2253 Locate
ycf3 gene − 41578 43523 1946 Locate
trnS-GGA gene + 44348 44434 87 Locate
rps4 gene − 44708 45313 606 Locate
trnT-UGU gene − 45674 45746 73 Locate
trnL-UAA gene + 46422 47005 584 Locate
trnF-GAA gene + 47308 47380 73 Locate
ndhJ gene − 47914 48390 477 Locate
ndhK gene − 48501 49178 678 Locate
ndhC gene − 49230 49592 363 Locate
trnV-UAC gene − 50539 51180 642 Locate
trnM-CAU gene + 51361 51433 73 Locate
atpE gene − 51643 52044 402 Locate
atpB gene − 52041 53537 1497 Locate
rbcL gene + 54330 55763 1434 Locate
accD gene + 56463 57944 1482 Locate
psaI gene + 58386 58496 111 Locate
ycf4 gene + 58942 59496 555 Locate
cemA gene + 60146 60835 690 Locate
petA gene + 61061 62023 963 Locate
psbJ gene − 63063 63185 123 Locate
psbL gene − 63320 63436 117 Locate
psbF gene − 63460 63579 120 Locate
psbE gene − 63594 63845 252 Locate
petL gene + 64663 64758 96 Locate
petG gene + 64937 65050 114 Locate
trnW-CCA gene − 65165 65238 74 Locate
trnP-UGG gene − 65413 65486 74 Locate
psaJ gene + 65771 65905 135 Locate
rpl33 gene + 66346 66546 201 Locate
rps18 gene + 66719 67024 306 Locate
rpl20 gene − 67259 67645 387 Locate
rps12 gene − 68447 68560 114 Locate
clpP gene − 68684 70594 1911 Locate
psbB gene + 71032 72558 1527 Locate
psbT gene + 72740 72841 102 Locate
psbN gene − 72907 73038 132 Locate
psbH gene + 73144 73365 222 Locate
petB gene + 73491 74882 1392 Locate
petD gene + 75070 76260 1191 Locate
rpoA gene − 76437 77444 1008 Locate
rps11 gene − 77515 77931 417 Locate
rpl36 gene − 78042 78155 114 Locate
infA gene − 78255 78488 234 Locate
rps8 gene − 78608 79012 405 Locate
rpl14 gene − 79193 79561 369 Locate
rpl16 gene − 79693 80962 1270 Locate
rps3 gene − 81105 81767 663 Locate
rpl22 gene − 81752 82219 468 Locate
rps19 gene − 82289 82567 279 Locate
rpl2 gene − 82627 84112 1486 Locate
rpl23 gene − 84131 84412 282 Locate
trnI-CAU gene − 84578 84651 74 Locate
ycf2 gene + 84740 91597 6858 Locate
ycf15 gene + 91739 91936 198 Locate
trnL-CAA gene − 92197 92277 81 Locate
ndhB gene − 92838 94985 2148 Locate
rps7 gene − 95314 95781 468 Locate
rps12 gene − 95835 96628 794 Locate
trnV-GAC gene + 98266 98337 72 Locate
rrn16S gene + 98564 100054 1491 Locate
trnI-GAU gene + 100353 101371 1019 Locate
trnA-UGC gene + 101436 102312 877 Locate
rrn23S gene + 102472 105282 2811 Locate
rrn4.5S gene + 105381 105483 103 Locate
rrn5S gene + 105739 105859 121 Locate
trnR-ACG gene + 106103 106176 74 Locate
trnN-GUU gene − 106679 106750 72 Locate
ndhF gene − 108098 110329 2232 Locate
rpl32 gene + 110763 110933 171 Locate
trnL-UAG gene + 111670 111749 80 Locate
ccsA gene + 111846 112823 978 Locate
ndhD gene − 113029 114570 1542 Locate
psaC gene − 114665 114910 246 Locate
ndhE gene − 115161 115466 306 Locate
ndhG gene − 115679 116209 531 Locate
ndhI gene − 116589 117095 507 Locate
ndhA gene − 117177 119281 2105 Locate
ndhH gene − 119283 120464 1182 Locate
rps15 gene − 120564 120836 273 Locate
ycf1 gene − 121254 126785 5532 Locate
trnN-GUU gene + 127115 127186 72 Locate
trnR-ACG gene − 127689 127762 74 Locate
rrn5S gene − 128006 128126 121 Locate
rrn4.5S gene − 128382 128484 103 Locate
rrn23S gene − 128583 131393 2811 Locate
trnA-UGC gene − 131553 132429 877 Locate
trnI-GAU gene − 132494 133512 1019 Locate
rrn16S gene − 133811 135301 1491 Locate
trnV-GAC gene − 135528 135599 72 Locate
rps12 gene + 137237 138030 794 Locate
rps7 gene + 138084 138551 468 Locate
ndhB gene + 138880 141027 2148 Locate
trnL-CAA gene + 141588 141668 81 Locate
ycf15 gene − 141929 142126 198 Locate
ycf2 gene − 142268 149125 6858 Locate
trnI-CAU gene + 149214 149287 74 Locate
rpl23 gene + 149453 149734 282 Locate
rpl2 gene + 149753 151238 1486 Locate
Status Available
Accession PX971244.1
Length 151,340 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources