Salvia columbariae chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PX971246.1 · 1–72 bp · −
psbA · PX971246.1 · 392–1,450 bp · −
trnK-UUU · PX971246.1 · 1,700–4,278 bp · −
matK · PX971246.1 · 2,012–3,541 bp · −
rps16 · PX971246.1 · 4,838–5,865 bp · −
trnQ-UUG · PX971246.1 · 6,427–6,498 bp · −
trnS-GCU · PX971246.1 · 7,729–7,816 bp · −
atpA · PX971246.1 · 9,617–11,140 bp · −
atpF · PX971246.1 · 11,235–12,477 bp · −
atpH · PX971246.1 · 12,754–12,999 bp · −
atpI · PX971246.1 · 14,029–14,772 bp · −
rps2 · PX971246.1 · 14,997–15,707 bp · −
rpoC2 · PX971246.1 · 15,909–20,096 bp · −
rpoC1 · PX971246.1 · 20,262–23,076 bp · −
rpoB · PX971246.1 · 23,103–26,315 bp · −
psbM · PX971246.1 · 28,831–28,935 bp · −
trnD-GUC · PX971246.1 · 29,452–29,525 bp · −
trnY-GUA · PX971246.1 · 29,636–29,719 bp · −
trnE-UUC · PX971246.1 · 29,791–29,863 bp · −
trnS-UGA · PX971246.1 · 34,541–34,633 bp · −
trnM-CAU · PX971246.1 · 35,655–35,728 bp · −
rps14 · PX971246.1 · 35,873–36,175 bp · −
psaB · PX971246.1 · 36,298–38,502 bp · −
psaA · PX971246.1 · 38,528–40,780 bp · −
ycf3 · PX971246.1 · 41,559–43,499 bp · −
rps4 · PX971246.1 · 44,689–45,294 bp · −
trnT-UGU · PX971246.1 · 45,656–45,728 bp · −
ndhJ · PX971246.1 · 47,888–48,364 bp · −
ndhK · PX971246.1 · 48,475–49,152 bp · −
ndhC · PX971246.1 · 49,204–49,566 bp · −
trnV-UAC · PX971246.1 · 50,512–51,152 bp · −
atpE · PX971246.1 · 51,610–52,011 bp · −
atpB · PX971246.1 · 52,008–53,504 bp · −
psbJ · PX971246.1 · 63,047–63,169 bp · −
psbL · PX971246.1 · 63,304–63,420 bp · −
psbF · PX971246.1 · 63,444–63,563 bp · −
psbE · PX971246.1 · 63,578–63,829 bp · −
trnW-CCA · PX971246.1 · 65,230–65,303 bp · −
trnP-UGG · PX971246.1 · 65,478–65,551 bp · −
rpl20 · PX971246.1 · 67,323–67,709 bp · −
rps12 · PX971246.1 · 68,508–68,621 bp · −
rps12 · PX971246.1 · 95,903–96,696 bp · −
clpP · PX971246.1 · 68,745–70,662 bp · −
psbN · PX971246.1 · 72,975–73,106 bp · −
rpoA · PX971246.1 · 76,490–77,497 bp · −
rps11 · PX971246.1 · 77,568–77,984 bp · −
rpl36 · PX971246.1 · 78,095–78,208 bp · −
infA · PX971246.1 · 78,304–78,537 bp · −
rps8 · PX971246.1 · 78,657–79,061 bp · −
rpl14 · PX971246.1 · 79,240–79,608 bp · −
rpl16 · PX971246.1 · 79,740–81,018 bp · −
rps3 · PX971246.1 · 81,161–81,823 bp · −
rpl22 · PX971246.1 · 81,808–82,281 bp · −
rps19 · PX971246.1 · 82,351–82,629 bp · −
rpl2 · PX971246.1 · 82,689–84,174 bp · −
rpl23 · PX971246.1 · 84,193–84,474 bp · −
trnI-CAU · PX971246.1 · 84,640–84,713 bp · −
trnL-CAA · PX971246.1 · 92,259–92,339 bp · −
ndhB · PX971246.1 · 92,900–95,053 bp · −
rps7 · PX971246.1 · 95,382–95,849 bp · −
trnN-GUU · PX971246.1 · 106,747–106,818 bp · −
ndhF · PX971246.1 · 108,166–110,397 bp · −
ndhD · PX971246.1 · 113,017–114,558 bp · −
psaC · PX971246.1 · 114,657–114,902 bp · −
ndhE · PX971246.1 · 115,153–115,458 bp · −
ndhG · PX971246.1 · 115,671–116,201 bp · −
ndhI · PX971246.1 · 116,582–117,088 bp · −
ndhA · PX971246.1 · 117,175–119,276 bp · −
ndhH · PX971246.1 · 119,278–120,459 bp · −
rps15 · PX971246.1 · 120,559–120,831 bp · −
ycf1 · PX971246.1 · 121,243–126,777 bp · −
trnR-ACG · PX971246.1 · 127,681–127,754 bp · −
rrn5S · PX971246.1 · 127,998–128,118 bp · −
rrn4.5S · PX971246.1 · 128,374–128,476 bp · −
rrn23S · PX971246.1 · 128,575–131,385 bp · −
trnA-UGC · PX971246.1 · 131,545–132,421 bp · −
trnI-GAU · PX971246.1 · 132,486–133,504 bp · −
rrn16S · PX971246.1 · 133,803–135,293 bp · −
trnV-GAC · PX971246.1 · 135,520–135,591 bp · −
ycf15 · PX971246.1 · 141,927–142,124 bp · −
ycf2 · PX971246.1 · 142,266–149,123 bp · −
psbK · PX971246.1 · 6,885–7,070 bp · +
psbI · PX971246.1 · 7,463–7,573 bp · +
trnG-UCC · PX971246.1 · 8,503–9,257 bp · +
trnR-UCU · PX971246.1 · 9,438–9,509 bp · +
trnC-GCA · PX971246.1 · 27,511–27,581 bp · +
petN · PX971246.1 · 27,737–27,826 bp · +
trnT-GGU · PX971246.1 · 30,422–30,493 bp · +
psbD · PX971246.1 · 31,866–32,927 bp · +
psbC · PX971246.1 · 32,875–34,296 bp · +
psbZ · PX971246.1 · 34,961–35,149 bp · +
trnG-GCC · PX971246.1 · 35,427–35,497 bp · +
trnS-GGA · PX971246.1 · 44,324–44,410 bp · +
trnL-UAA · PX971246.1 · 46,403–46,978 bp · +
trnF-GAA · PX971246.1 · 47,277–47,349 bp · +
trnM-CAU · PX971246.1 · 51,333–51,405 bp · +
rbcL · PX971246.1 · 54,300–55,733 bp · +
accD · PX971246.1 · 56,433–57,914 bp · +
psaI · PX971246.1 · 58,372–58,482 bp · +
ycf4 · PX971246.1 · 58,927–59,481 bp · +
cemA · PX971246.1 · 60,131–60,820 bp · +
petA · PX971246.1 · 61,046–62,008 bp · +
petL · PX971246.1 · 64,728–64,823 bp · +
petG · PX971246.1 · 65,002–65,115 bp · +
psaJ · PX971246.1 · 65,836–65,970 bp · +
rpl33 · PX971246.1 · 66,411–66,611 bp · +
rps18 · PX971246.1 · 66,784–67,089 bp · +
rps12 · PX971246.1 · 137,229–138,022 bp · +
psbB · PX971246.1 · 71,100–72,626 bp · +
psbT · PX971246.1 · 72,808–72,909 bp · +
psbH · PX971246.1 · 73,212–73,433 bp · +
petB · PX971246.1 · 73,559–74,935 bp · +
petD · PX971246.1 · 75,123–76,313 bp · +
ycf2 · PX971246.1 · 84,802–91,659 bp · +
ycf15 · PX971246.1 · 91,801–91,998 bp · +
trnV-GAC · PX971246.1 · 98,334–98,405 bp · +
rrn16S · PX971246.1 · 98,632–100,122 bp · +
trnI-GAU · PX971246.1 · 100,421–101,439 bp · +
trnA-UGC · PX971246.1 · 101,504–102,380 bp · +
rrn23S · PX971246.1 · 102,540–105,350 bp · +
rrn4.5S · PX971246.1 · 105,449–105,551 bp · +
rrn5S · PX971246.1 · 105,807–105,927 bp · +
trnR-ACG · PX971246.1 · 106,171–106,244 bp · +
rpl32 · PX971246.1 · 110,833–111,003 bp · +
trnL-UAG · PX971246.1 · 111,651–111,730 bp · +
ccsA · PX971246.1 · 111,827–112,804 bp · +
trnN-GUU · PX971246.1 · 127,107–127,178 bp · +
rps7 · PX971246.1 · 138,076–138,543 bp · +
ndhB · PX971246.1 · 138,872–141,025 bp · +
trnL-CAA · PX971246.1 · 141,586–141,666 bp · +
trnI-CAU · PX971246.1 · 149,212–149,285 bp · +
rpl23 · PX971246.1 · 149,451–149,732 bp · +
rpl2 · PX971246.1 · 149,751–151,236 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia columbariae
ANNOTATED PLASTOME
PX971246.1
151,338 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37834 75669 113504 151338 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 72 72 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1700 4278 2579 Locate
matK gene − 2012 3541 1530 Locate
rps16 gene − 4838 5865 1028 Locate
trnQ-UUG gene − 6427 6498 72 Locate
psbK gene + 6885 7070 186 Locate
psbI gene + 7463 7573 111 Locate
trnS-GCU gene − 7729 7816 88 Locate
trnG-UCC gene + 8503 9257 755 Locate
trnR-UCU gene + 9438 9509 72 Locate
atpA gene − 9617 11140 1524 Locate
atpF gene − 11235 12477 1243 Locate
atpH gene − 12754 12999 246 Locate
atpI gene − 14029 14772 744 Locate
rps2 gene − 14997 15707 711 Locate
rpoC2 gene − 15909 20096 4188 Locate
rpoC1 gene − 20262 23076 2815 Locate
rpoB gene − 23103 26315 3213 Locate
trnC-GCA gene + 27511 27581 71 Locate
petN gene + 27737 27826 90 Locate
psbM gene − 28831 28935 105 Locate
trnD-GUC gene − 29452 29525 74 Locate
trnY-GUA gene − 29636 29719 84 Locate
trnE-UUC gene − 29791 29863 73 Locate
trnT-GGU gene + 30422 30493 72 Locate
psbD gene + 31866 32927 1062 Locate
psbC gene + 32875 34296 1422 Locate
trnS-UGA gene − 34541 34633 93 Locate
psbZ gene + 34961 35149 189 Locate
trnG-GCC gene + 35427 35497 71 Locate
trnM-CAU gene − 35655 35728 74 Locate
rps14 gene − 35873 36175 303 Locate
psaB gene − 36298 38502 2205 Locate
psaA gene − 38528 40780 2253 Locate
ycf3 gene − 41559 43499 1941 Locate
trnS-GGA gene + 44324 44410 87 Locate
rps4 gene − 44689 45294 606 Locate
trnT-UGU gene − 45656 45728 73 Locate
trnL-UAA gene + 46403 46978 576 Locate
trnF-GAA gene + 47277 47349 73 Locate
ndhJ gene − 47888 48364 477 Locate
ndhK gene − 48475 49152 678 Locate
ndhC gene − 49204 49566 363 Locate
trnV-UAC gene − 50512 51152 641 Locate
trnM-CAU gene + 51333 51405 73 Locate
atpE gene − 51610 52011 402 Locate
atpB gene − 52008 53504 1497 Locate
rbcL gene + 54300 55733 1434 Locate
accD gene + 56433 57914 1482 Locate
psaI gene + 58372 58482 111 Locate
ycf4 gene + 58927 59481 555 Locate
cemA gene + 60131 60820 690 Locate
petA gene + 61046 62008 963 Locate
psbJ gene − 63047 63169 123 Locate
psbL gene − 63304 63420 117 Locate
psbF gene − 63444 63563 120 Locate
psbE gene − 63578 63829 252 Locate
petL gene + 64728 64823 96 Locate
petG gene + 65002 65115 114 Locate
trnW-CCA gene − 65230 65303 74 Locate
trnP-UGG gene − 65478 65551 74 Locate
psaJ gene + 65836 65970 135 Locate
rpl33 gene + 66411 66611 201 Locate
rps18 gene + 66784 67089 306 Locate
rpl20 gene − 67323 67709 387 Locate
rps12 gene − 68508 68621 114 Locate
clpP gene − 68745 70662 1918 Locate
psbB gene + 71100 72626 1527 Locate
psbT gene + 72808 72909 102 Locate
psbN gene − 72975 73106 132 Locate
psbH gene + 73212 73433 222 Locate
petB gene + 73559 74935 1377 Locate
petD gene + 75123 76313 1191 Locate
rpoA gene − 76490 77497 1008 Locate
rps11 gene − 77568 77984 417 Locate
rpl36 gene − 78095 78208 114 Locate
infA gene − 78304 78537 234 Locate
rps8 gene − 78657 79061 405 Locate
rpl14 gene − 79240 79608 369 Locate
rpl16 gene − 79740 81018 1279 Locate
rps3 gene − 81161 81823 663 Locate
rpl22 gene − 81808 82281 474 Locate
rps19 gene − 82351 82629 279 Locate
rpl2 gene − 82689 84174 1486 Locate
rpl23 gene − 84193 84474 282 Locate
trnI-CAU gene − 84640 84713 74 Locate
ycf2 gene + 84802 91659 6858 Locate
ycf15 gene + 91801 91998 198 Locate
trnL-CAA gene − 92259 92339 81 Locate
ndhB gene − 92900 95053 2154 Locate
rps7 gene − 95382 95849 468 Locate
rps12 gene − 95903 96696 794 Locate
trnV-GAC gene + 98334 98405 72 Locate
rrn16S gene + 98632 100122 1491 Locate
trnI-GAU gene + 100421 101439 1019 Locate
trnA-UGC gene + 101504 102380 877 Locate
rrn23S gene + 102540 105350 2811 Locate
rrn4.5S gene + 105449 105551 103 Locate
rrn5S gene + 105807 105927 121 Locate
trnR-ACG gene + 106171 106244 74 Locate
trnN-GUU gene − 106747 106818 72 Locate
ndhF gene − 108166 110397 2232 Locate
rpl32 gene + 110833 111003 171 Locate
trnL-UAG gene + 111651 111730 80 Locate
ccsA gene + 111827 112804 978 Locate
ndhD gene − 113017 114558 1542 Locate
psaC gene − 114657 114902 246 Locate
ndhE gene − 115153 115458 306 Locate
ndhG gene − 115671 116201 531 Locate
ndhI gene − 116582 117088 507 Locate
ndhA gene − 117175 119276 2102 Locate
ndhH gene − 119278 120459 1182 Locate
rps15 gene − 120559 120831 273 Locate
ycf1 gene − 121243 126777 5535 Locate
trnN-GUU gene + 127107 127178 72 Locate
trnR-ACG gene − 127681 127754 74 Locate
rrn5S gene − 127998 128118 121 Locate
rrn4.5S gene − 128374 128476 103 Locate
rrn23S gene − 128575 131385 2811 Locate
trnA-UGC gene − 131545 132421 877 Locate
trnI-GAU gene − 132486 133504 1019 Locate
rrn16S gene − 133803 135293 1491 Locate
trnV-GAC gene − 135520 135591 72 Locate
rps12 gene + 137229 138022 794 Locate
rps7 gene + 138076 138543 468 Locate
ndhB gene + 138872 141025 2154 Locate
trnL-CAA gene + 141586 141666 81 Locate
ycf15 gene − 141927 142124 198 Locate
ycf2 gene − 142266 149123 6858 Locate
trnI-CAU gene + 149212 149285 74 Locate
rpl23 gene + 149451 149732 282 Locate
rpl2 gene + 149751 151236 1486 Locate
Status Available
Accession PX971246.1
Length 151,338 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources