Salvia farinacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ359435.1 · 2–75 bp · −
psbA · PQ359435.1 · 392–1,450 bp · −
trnK-UUU · PQ359435.1 · 1,682–4,247 bp · −
matK · PQ359435.1 · 1,986–3,509 bp · −
rps16 · PQ359435.1 · 4,817–5,915 bp · −
trnQ-UUG · PQ359435.1 · 6,672–6,743 bp · −
trnS-GCU · PQ359435.1 · 7,967–8,054 bp · −
atpA · PQ359435.1 · 9,878–11,401 bp · −
atpF · PQ359435.1 · 11,499–12,757 bp · −
atpH · PQ359435.1 · 13,031–13,276 bp · −
atpI · PQ359435.1 · 14,290–15,033 bp · −
rps2 · PQ359435.1 · 15,257–15,967 bp · −
rpoC2 · PQ359435.1 · 16,173–20,360 bp · −
rpoC1 · PQ359435.1 · 20,527–23,338 bp · −
rpoB · PQ359435.1 · 23,365–26,577 bp · −
psbM · PQ359435.1 · 29,036–29,140 bp · −
trnD-GUC · PQ359435.1 · 29,511–29,584 bp · −
trnY-GUA · PQ359435.1 · 29,697–29,780 bp · −
trnE-UUC · PQ359435.1 · 29,850–29,922 bp · −
trnS-UGA · PQ359435.1 · 34,577–34,669 bp · −
trnfM-CAU · PQ359435.1 · 35,690–35,763 bp · −
rps14 · PQ359435.1 · 35,908–36,210 bp · −
psaB · PQ359435.1 · 36,333–38,537 bp · −
psaA · PQ359435.1 · 38,563–40,815 bp · −
ycf3 · PQ359435.1 · 41,546–43,482 bp · −
rps4 · PQ359435.1 · 44,673–45,278 bp · −
trnT-UGU · PQ359435.1 · 45,638–45,710 bp · −
ndhJ · PQ359435.1 · 47,783–48,259 bp · −
ndhK · PQ359435.1 · 48,370–49,047 bp · −
ndhC · PQ359435.1 · 49,099–49,461 bp · −
trnV-UAC · PQ359435.1 · 50,265–50,910 bp · −
atpE · PQ359435.1 · 51,353–51,754 bp · −
atpB · PQ359435.1 · 51,751–53,247 bp · −
psbJ · PQ359435.1 · 62,658–62,780 bp · −
psbL · PQ359435.1 · 62,910–63,026 bp · −
psbF · PQ359435.1 · 63,050–63,169 bp · −
psbE · PQ359435.1 · 63,184–63,435 bp · −
trnW-CCA · PQ359435.1 · 64,836–64,909 bp · −
trnP-UGG · PQ359435.1 · 65,085–65,158 bp · −
rpl20 · PQ359435.1 · 66,924–67,310 bp · −
rps12 · PQ359435.1 · 68,118–68,231 bp · −
rps12 · PQ359435.1 · 95,471–96,264 bp · −
clpP · PQ359435.1 · 68,355–70,263 bp · −
psbN · PQ359435.1 · 72,592–72,723 bp · −
rpoA · PQ359435.1 · 76,091–77,098 bp · −
rps11 · PQ359435.1 · 77,168–77,584 bp · −
rpl36 · PQ359435.1 · 77,696–77,809 bp · −
infA · PQ359435.1 · 77,905–78,138 bp · −
rps8 · PQ359435.1 · 78,260–78,664 bp · −
rpl14 · PQ359435.1 · 78,838–79,206 bp · −
rpl16 · PQ359435.1 · 79,337–80,612 bp · −
rps3 · PQ359435.1 · 80,755–81,417 bp · −
rpl22 · PQ359435.1 · 81,402–81,869 bp · −
rps19 · PQ359435.1 · 81,939–82,217 bp · −
rpl2 · PQ359435.1 · 82,280–83,771 bp · −
rpl23 · PQ359435.1 · 83,790–84,071 bp · −
trnI-CAU · PQ359435.1 · 84,237–84,310 bp · −
trnL-CAA · PQ359435.1 · 91,838–91,918 bp · −
ndhB · PQ359435.1 · 92,468–94,621 bp · −
rps7 · PQ359435.1 · 94,950–95,417 bp · −
trnN-GUU · PQ359435.1 · 106,357–106,428 bp · −
ndhF · PQ359435.1 · 107,776–110,007 bp · −
ndhD · PQ359435.1 · 112,671–114,212 bp · −
psaC · PQ359435.1 · 114,307–114,552 bp · −
ndhE · PQ359435.1 · 114,803–115,108 bp · −
ndhG · PQ359435.1 · 115,320–115,850 bp · −
ndhI · PQ359435.1 · 116,217–116,723 bp · −
ndhA · PQ359435.1 · 116,804–118,903 bp · −
ndhH · PQ359435.1 · 118,905–120,086 bp · −
rps15 · PQ359435.1 · 120,186–120,458 bp · −
ycf1 · PQ359435.1 · 120,865–126,390 bp · −
trnR-ACG · PQ359435.1 · 127,294–127,367 bp · −
rrn5S · PQ359435.1 · 127,611–127,731 bp · −
rrn4.5S · PQ359435.1 · 127,987–128,089 bp · −
rrn23S · PQ359435.1 · 128,188–130,998 bp · −
trnA-UGC · PQ359435.1 · 131,164–132,040 bp · −
trnI-GAU · PQ359435.1 · 132,105–133,123 bp · −
rrn16S · PQ359435.1 · 133,422–134,912 bp · −
trnV-GAC · PQ359435.1 · 135,139–135,210 bp · −
ycf15 · PQ359435.1 · 141,571–141,768 bp · −
ycf2 · PQ359435.1 · 141,910–148,749 bp · −
psbK · PQ359435.1 · 7,129–7,314 bp · +
psbI · PQ359435.1 · 7,706–7,816 bp · +
trnG-UCC · PQ359435.1 · 8,761–9,521 bp · +
trnR-UCU · PQ359435.1 · 9,697–9,768 bp · +
trnC-GCA · PQ359435.1 · 27,737–27,807 bp · +
petN · PQ359435.1 · 27,963–28,052 bp · +
trnT-GGU · PQ359435.1 · 30,464–30,535 bp · +
psbD · PQ359435.1 · 31,908–32,969 bp · +
psbC · PQ359435.1 · 32,917–34,338 bp · +
psbZ · PQ359435.1 · 34,997–35,185 bp · +
trnG-GCC · PQ359435.1 · 35,463–35,533 bp · +
trnS-GGA · PQ359435.1 · 44,309–44,395 bp · +
trnL-UAA · PQ359435.1 · 46,372–46,946 bp · +
trnF-GAA · PQ359435.1 · 47,234–47,306 bp · +
trnM-CAU · PQ359435.1 · 51,091–51,163 bp · +
rbcL · PQ359435.1 · 54,043–55,476 bp · +
accD · PQ359435.1 · 56,148–57,575 bp · +
psaI · PQ359435.1 · 58,039–58,149 bp · +
ycf4 · PQ359435.1 · 58,595–59,149 bp · +
cemA · PQ359435.1 · 59,792–60,481 bp · +
petA · PQ359435.1 · 60,703–61,665 bp · +
petL · PQ359435.1 · 64,335–64,430 bp · +
petG · PQ359435.1 · 64,608–64,721 bp · +
psaJ · PQ359435.1 · 65,435–65,569 bp · +
rpl33 · PQ359435.1 · 66,008–66,208 bp · +
rps18 · PQ359435.1 · 66,381–66,686 bp · +
rps12 · PQ359435.1 · 136,884–137,677 bp · +
psbB · PQ359435.1 · 70,708–72,234 bp · +
psbT · PQ359435.1 · 72,425–72,526 bp · +
psbH · PQ359435.1 · 72,829–73,050 bp · +
petB · PQ359435.1 · 73,184–74,543 bp · +
petD · PQ359435.1 · 74,731–75,914 bp · +
ycf2 · PQ359435.1 · 84,399–91,238 bp · +
ycf15 · PQ359435.1 · 91,380–91,577 bp · +
trnV-GAC · PQ359435.1 · 97,938–98,009 bp · +
rrn16S · PQ359435.1 · 98,236–99,726 bp · +
trnI-GAU · PQ359435.1 · 100,025–101,043 bp · +
trnA-UGC · PQ359435.1 · 101,108–101,984 bp · +
rrn23S · PQ359435.1 · 102,150–104,960 bp · +
rrn4.5S · PQ359435.1 · 105,059–105,161 bp · +
rrn5S · PQ359435.1 · 105,417–105,537 bp · +
trnR-ACG · PQ359435.1 · 105,781–105,854 bp · +
rpl32 · PQ359435.1 · 110,462–110,632 bp · +
trnL-UAG · PQ359435.1 · 111,280–111,359 bp · +
ccsA · PQ359435.1 · 111,456–112,433 bp · +
trnN-GUU · PQ359435.1 · 126,720–126,791 bp · +
rps7 · PQ359435.1 · 137,731–138,198 bp · +
ndhB · PQ359435.1 · 138,527–140,680 bp · +
trnL-CAA · PQ359435.1 · 141,230–141,310 bp · +
trnI-CAU · PQ359435.1 · 148,838–148,911 bp · +
rpl23 · PQ359435.1 · 149,077–149,358 bp · +
rpl2 · PQ359435.1 · 149,377–150,868 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia farinacea
ANNOTATED PLASTOME
PQ359435.1
150,919 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37730 75460 113189 150919 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1682 4247 2566 Locate
matK gene − 1986 3509 1524 Locate
rps16 gene − 4817 5915 1099 Locate
trnQ-UUG gene − 6672 6743 72 Locate
psbK gene + 7129 7314 186 Locate
psbI gene + 7706 7816 111 Locate
trnS-GCU gene − 7967 8054 88 Locate
trnG-UCC gene + 8761 9521 761 Locate
trnR-UCU gene + 9697 9768 72 Locate
atpA gene − 9878 11401 1524 Locate
atpF gene − 11499 12757 1259 Locate
atpH gene − 13031 13276 246 Locate
atpI gene − 14290 15033 744 Locate
rps2 gene − 15257 15967 711 Locate
rpoC2 gene − 16173 20360 4188 Locate
rpoC1 gene − 20527 23338 2812 Locate
rpoB gene − 23365 26577 3213 Locate
trnC-GCA gene + 27737 27807 71 Locate
petN gene + 27963 28052 90 Locate
psbM gene − 29036 29140 105 Locate
trnD-GUC gene − 29511 29584 74 Locate
trnY-GUA gene − 29697 29780 84 Locate
trnE-UUC gene − 29850 29922 73 Locate
trnT-GGU gene + 30464 30535 72 Locate
psbD gene + 31908 32969 1062 Locate
psbC gene + 32917 34338 1422 Locate
trnS-UGA gene − 34577 34669 93 Locate
psbZ gene + 34997 35185 189 Locate
trnG-GCC gene + 35463 35533 71 Locate
trnfM-CAU gene − 35690 35763 74 Locate
rps14 gene − 35908 36210 303 Locate
psaB gene − 36333 38537 2205 Locate
psaA gene − 38563 40815 2253 Locate
ycf3 gene − 41546 43482 1937 Locate
trnS-GGA gene + 44309 44395 87 Locate
rps4 gene − 44673 45278 606 Locate
trnT-UGU gene − 45638 45710 73 Locate
trnL-UAA gene + 46372 46946 575 Locate
trnF-GAA gene + 47234 47306 73 Locate
ndhJ gene − 47783 48259 477 Locate
ndhK gene − 48370 49047 678 Locate
ndhC gene − 49099 49461 363 Locate
trnV-UAC gene − 50265 50910 646 Locate
trnM-CAU gene + 51091 51163 73 Locate
atpE gene − 51353 51754 402 Locate
atpB gene − 51751 53247 1497 Locate
rbcL gene + 54043 55476 1434 Locate
accD gene + 56148 57575 1428 Locate
psaI gene + 58039 58149 111 Locate
ycf4 gene + 58595 59149 555 Locate
cemA gene + 59792 60481 690 Locate
petA gene + 60703 61665 963 Locate
psbJ gene − 62658 62780 123 Locate
psbL gene − 62910 63026 117 Locate
psbF gene − 63050 63169 120 Locate
psbE gene − 63184 63435 252 Locate
petL gene + 64335 64430 96 Locate
petG gene + 64608 64721 114 Locate
trnW-CCA gene − 64836 64909 74 Locate
trnP-UGG gene − 65085 65158 74 Locate
psaJ gene + 65435 65569 135 Locate
rpl33 gene + 66008 66208 201 Locate
rps18 gene + 66381 66686 306 Locate
rpl20 gene − 66924 67310 387 Locate
rps12 gene − 68118 68231 114 Locate
clpP gene − 68355 70263 1909 Locate
psbB gene + 70708 72234 1527 Locate
psbT gene + 72425 72526 102 Locate
psbN gene − 72592 72723 132 Locate
psbH gene + 72829 73050 222 Locate
petB gene + 73184 74543 1360 Locate
petD gene + 74731 75914 1184 Locate
rpoA gene − 76091 77098 1008 Locate
rps11 gene − 77168 77584 417 Locate
rpl36 gene − 77696 77809 114 Locate
infA gene − 77905 78138 234 Locate
rps8 gene − 78260 78664 405 Locate
rpl14 gene − 78838 79206 369 Locate
rpl16 gene − 79337 80612 1276 Locate
rps3 gene − 80755 81417 663 Locate
rpl22 gene − 81402 81869 468 Locate
rps19 gene − 81939 82217 279 Locate
rpl2 gene − 82280 83771 1492 Locate
rpl23 gene − 83790 84071 282 Locate
trnI-CAU gene − 84237 84310 74 Locate
ycf2 gene + 84399 91238 6840 Locate
ycf15 gene + 91380 91577 198 Locate
trnL-CAA gene − 91838 91918 81 Locate
ndhB gene − 92468 94621 2154 Locate
rps7 gene − 94950 95417 468 Locate
rps12 gene − 95471 96264 794 Locate
trnV-GAC gene + 97938 98009 72 Locate
rrn16S gene + 98236 99726 1491 Locate
trnI-GAU gene + 100025 101043 1019 Locate
trnA-UGC gene + 101108 101984 877 Locate
rrn23S gene + 102150 104960 2811 Locate
rrn4.5S gene + 105059 105161 103 Locate
rrn5S gene + 105417 105537 121 Locate
trnR-ACG gene + 105781 105854 74 Locate
trnN-GUU gene − 106357 106428 72 Locate
ndhF gene − 107776 110007 2232 Locate
rpl32 gene + 110462 110632 171 Locate
trnL-UAG gene + 111280 111359 80 Locate
ccsA gene + 111456 112433 978 Locate
ndhD gene − 112671 114212 1542 Locate
psaC gene − 114307 114552 246 Locate
ndhE gene − 114803 115108 306 Locate
ndhG gene − 115320 115850 531 Locate
ndhI gene − 116217 116723 507 Locate
ndhA gene − 116804 118903 2100 Locate
ndhH gene − 118905 120086 1182 Locate
rps15 gene − 120186 120458 273 Locate
ycf1 gene − 120865 126390 5526 Locate
trnN-GUU gene + 126720 126791 72 Locate
trnR-ACG gene − 127294 127367 74 Locate
rrn5S gene − 127611 127731 121 Locate
rrn4.5S gene − 127987 128089 103 Locate
rrn23S gene − 128188 130998 2811 Locate
trnA-UGC gene − 131164 132040 877 Locate
trnI-GAU gene − 132105 133123 1019 Locate
rrn16S gene − 133422 134912 1491 Locate
trnV-GAC gene − 135139 135210 72 Locate
rps12 gene + 136884 137677 794 Locate
rps7 gene + 137731 138198 468 Locate
ndhB gene + 138527 140680 2154 Locate
trnL-CAA gene + 141230 141310 81 Locate
ycf15 gene − 141571 141768 198 Locate
ycf2 gene − 141910 148749 6840 Locate
trnI-CAU gene + 148838 148911 74 Locate
rpl23 gene + 149077 149358 282 Locate
rpl2 gene + 149377 150868 1492 Locate
Status Available
Accession PQ359435.1
Length 150,919 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources