Salvia huberi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870860.1 · 11–84 bp · −
psbA · PV870860.1 · 414–1,472 bp · −
trnK-UUU · PV870860.1 · 1,704–4,292 bp · −
matK · PV870860.1 · 2,024–3,553 bp · −
rps16 · PV870860.1 · 4,864–5,973 bp · −
trnQ-UUG · PV870860.1 · 6,527–6,598 bp · −
trnS-GCU · PV870860.1 · 7,831–7,918 bp · −
atpA · PV870860.1 · 9,737–11,260 bp · −
atpF · PV870860.1 · 11,356–12,608 bp · −
atpH · PV870860.1 · 12,888–13,133 bp · −
atpI · PV870860.1 · 14,162–14,905 bp · −
rps2 · PV870860.1 · 15,130–15,840 bp · −
rpoC2 · PV870860.1 · 16,049–20,230 bp · −
rpoC1 · PV870860.1 · 20,395–23,211 bp · −
rpoB · PV870860.1 · 23,238–26,450 bp · −
psbM · PV870860.1 · 28,859–28,963 bp · −
trnD-GUC · PV870860.1 · 29,482–29,555 bp · −
trnY-GUA · PV870860.1 · 29,666–29,749 bp · −
trnE-UUC · PV870860.1 · 29,820–29,892 bp · −
trnS-UGA · PV870860.1 · 34,538–34,629 bp · −
trnfM-CAU · PV870860.1 · 35,685–35,758 bp · −
rps14 · PV870860.1 · 35,917–36,219 bp · −
psaB · PV870860.1 · 36,342–38,546 bp · −
psaA · PV870860.1 · 38,572–40,824 bp · −
ycf3 · PV870860.1 · 41,599–43,551 bp · −
rps4 · PV870860.1 · 44,455–45,060 bp · −
trnT-UGU · PV870860.1 · 45,422–45,494 bp · −
ndhJ · PV870860.1 · 47,749–48,225 bp · −
ndhK · PV870860.1 · 48,336–49,013 bp · −
ndhC · PV870860.1 · 49,065–49,427 bp · −
trnV-UAC · PV870860.1 · 50,387–51,034 bp · −
atpE · PV870860.1 · 51,498–51,899 bp · −
atpB · PV870860.1 · 51,896–53,392 bp · −
psbJ · PV870860.1 · 62,851–62,973 bp · −
psbL · PV870860.1 · 63,103–63,219 bp · −
psbF · PV870860.1 · 63,243–63,362 bp · −
psbE · PV870860.1 · 63,377–63,628 bp · −
trnW-CCA · PV870860.1 · 65,026–65,099 bp · −
trnP-UGG · PV870860.1 · 65,273–65,346 bp · −
rpl20 · PV870860.1 · 67,115–67,501 bp · −
rps12 · PV870860.1 · 68,298–68,411 bp · −
rps12 · PV870860.1 · 95,644–96,437 bp · −
clpP · PV870860.1 · 68,534–70,435 bp · −
psbN · PV870860.1 · 72,766–72,897 bp · −
rpoA · PV870860.1 · 76,277–77,284 bp · −
rps11 · PV870860.1 · 77,355–77,771 bp · −
rpl36 · PV870860.1 · 77,881–77,994 bp · −
infA · PV870860.1 · 78,090–78,323 bp · −
rps8 · PV870860.1 · 78,444–78,848 bp · −
rpl14 · PV870860.1 · 79,033–79,401 bp · −
rpl16 · PV870860.1 · 79,531–80,799 bp · −
rps3 · PV870860.1 · 80,942–81,604 bp · −
rpl22 · PV870860.1 · 81,589–82,056 bp · −
rps19 · PV870860.1 · 82,126–82,404 bp · −
rpl2 · PV870860.1 · 82,464–83,951 bp · −
rpl23 · PV870860.1 · 83,970–84,251 bp · −
trnI-CAU · PV870860.1 · 84,417–84,490 bp · −
trnL-CAA · PV870860.1 · 92,009–92,089 bp · −
ndhB · PV870860.1 · 92,641–94,848 bp · −
rps7 · PV870860.1 · 95,123–95,590 bp · −
trnN-GUU · PV870860.1 · 106,490–106,561 bp · −
ndhF · PV870860.1 · 107,915–110,146 bp · −
ndhD · PV870860.1 · 112,848–114,389 bp · −
psaC · PV870860.1 · 114,480–114,725 bp · −
ndhE · PV870860.1 · 114,976–115,281 bp · −
ndhG · PV870860.1 · 115,461–115,991 bp · −
ndhI · PV870860.1 · 116,366–116,872 bp · −
ndhA · PV870860.1 · 116,953–119,052 bp · −
ndhH · PV870860.1 · 119,054–120,235 bp · −
rps15 · PV870860.1 · 120,335–120,607 bp · −
ycf1 · PV870860.1 · 120,988–126,519 bp · −
trnR-ACG · PV870860.1 · 127,445–127,518 bp · −
rrn5S · PV870860.1 · 127,762–127,882 bp · −
rrn4.5S · PV870860.1 · 128,132–128,234 bp · −
rrn23S · PV870860.1 · 128,333–131,143 bp · −
trnA-UGC · PV870860.1 · 131,309–132,186 bp · −
trnI-GAU · PV870860.1 · 132,251–133,270 bp · −
rrn16S · PV870860.1 · 133,569–135,059 bp · −
trnV-GAC · PV870860.1 · 135,286–135,357 bp · −
ycf15 · PV870860.1 · 141,662–141,859 bp · −
ycf2 · PV870860.1 · 142,001–148,831 bp · −
psbK · PV870860.1 · 6,985–7,164 bp · +
psbI · PV870860.1 · 7,564–7,674 bp · +
trnG-UCC · PV870860.1 · 8,625–9,379 bp · +
trnR-UCU · PV870860.1 · 9,559–9,630 bp · +
trnC-GCA · PV870860.1 · 27,589–27,659 bp · +
petN · PV870860.1 · 27,823–27,912 bp · +
trnT-GGU · PV870860.1 · 30,439–30,510 bp · +
psbD · PV870860.1 · 31,861–32,922 bp · +
psbC · PV870860.1 · 32,870–34,291 bp · +
psbZ · PV870860.1 · 34,975–35,163 bp · +
trnG-GCC · PV870860.1 · 35,441–35,511 bp · +
trnS-GGA · PV870860.1 · 44,111–44,197 bp · +
trnL-UAA · PV870860.1 · 46,174–46,744 bp · +
trnF-GAA · PV870860.1 · 47,028–47,100 bp · +
trnM-CAU · PV870860.1 · 51,215–51,287 bp · +
rbcL · PV870860.1 · 54,184–55,629 bp · +
accD · PV870860.1 · 56,304–57,785 bp · +
psaI · PV870860.1 · 58,251–58,361 bp · +
ycf4 · PV870860.1 · 58,794–59,348 bp · +
cemA · PV870860.1 · 60,003–60,692 bp · +
petA · PV870860.1 · 60,900–61,862 bp · +
petL · PV870860.1 · 64,522–64,617 bp · +
petG · PV870860.1 · 64,797–64,910 bp · +
psaJ · PV870860.1 · 65,625–65,759 bp · +
rpl33 · PV870860.1 · 66,204–66,404 bp · +
rps18 · PV870860.1 · 66,575–66,880 bp · +
rps12 · PV870860.1 · 136,973–137,766 bp · +
psbB · PV870860.1 · 70,889–72,415 bp · +
psbT · PV870860.1 · 72,598–72,705 bp · +
psbH · PV870860.1 · 73,003–73,224 bp · +
petB · PV870860.1 · 73,350–74,726 bp · +
petD · PV870860.1 · 74,910–76,100 bp · +
ycf2 · PV870860.1 · 84,579–91,409 bp · +
ycf15 · PV870860.1 · 91,551–91,748 bp · +
trnV-GAC · PV870860.1 · 98,053–98,124 bp · +
rrn16S · PV870860.1 · 98,351–99,841 bp · +
trnI-GAU · PV870860.1 · 100,140–101,159 bp · +
trnA-UGC · PV870860.1 · 101,224–102,101 bp · +
rrn23S · PV870860.1 · 102,267–105,077 bp · +
rrn4.5S · PV870860.1 · 105,176–105,278 bp · +
rrn5S · PV870860.1 · 105,528–105,648 bp · +
trnR-ACG · PV870860.1 · 105,892–105,965 bp · +
rpl32 · PV870860.1 · 110,593–110,754 bp · +
trnL-UAG · PV870860.1 · 111,466–111,545 bp · +
ccsA · PV870860.1 · 111,642–112,613 bp · +
trnN-GUU · PV870860.1 · 126,849–126,920 bp · +
rps7 · PV870860.1 · 137,820–138,287 bp · +
ndhB · PV870860.1 · 138,562–140,769 bp · +
trnL-CAA · PV870860.1 · 141,321–141,401 bp · +
trnI-CAU · PV870860.1 · 148,920–148,993 bp · +
rpl23 · PV870860.1 · 149,159–149,440 bp · +
rpl2 · PV870860.1 · 149,459–150,946 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia huberi
ANNOTATED PLASTOME
PV870860.1
151,048 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37762 75524 113286 151048 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 414 1472 1059 Locate
trnK-UUU gene − 1704 4292 2589 Locate
matK gene − 2024 3553 1530 Locate
rps16 gene − 4864 5973 1110 Locate
trnQ-UUG gene − 6527 6598 72 Locate
psbK gene + 6985 7164 180 Locate
psbI gene + 7564 7674 111 Locate
trnS-GCU gene − 7831 7918 88 Locate
trnG-UCC gene + 8625 9379 755 Locate
trnR-UCU gene + 9559 9630 72 Locate
atpA gene − 9737 11260 1524 Locate
atpF gene − 11356 12608 1253 Locate
atpH gene − 12888 13133 246 Locate
atpI gene − 14162 14905 744 Locate
rps2 gene − 15130 15840 711 Locate
rpoC2 gene − 16049 20230 4182 Locate
rpoC1 gene − 20395 23211 2817 Locate
rpoB gene − 23238 26450 3213 Locate
trnC-GCA gene + 27589 27659 71 Locate
petN gene + 27823 27912 90 Locate
psbM gene − 28859 28963 105 Locate
trnD-GUC gene − 29482 29555 74 Locate
trnY-GUA gene − 29666 29749 84 Locate
trnE-UUC gene − 29820 29892 73 Locate
trnT-GGU gene + 30439 30510 72 Locate
psbD gene + 31861 32922 1062 Locate
psbC gene + 32870 34291 1422 Locate
trnS-UGA gene − 34538 34629 92 Locate
psbZ gene + 34975 35163 189 Locate
trnG-GCC gene + 35441 35511 71 Locate
trnfM-CAU gene − 35685 35758 74 Locate
rps14 gene − 35917 36219 303 Locate
psaB gene − 36342 38546 2205 Locate
psaA gene − 38572 40824 2253 Locate
ycf3 gene − 41599 43551 1953 Locate
trnS-GGA gene + 44111 44197 87 Locate
rps4 gene − 44455 45060 606 Locate
trnT-UGU gene − 45422 45494 73 Locate
trnL-UAA gene + 46174 46744 571 Locate
trnF-GAA gene + 47028 47100 73 Locate
ndhJ gene − 47749 48225 477 Locate
ndhK gene − 48336 49013 678 Locate
ndhC gene − 49065 49427 363 Locate
trnV-UAC gene − 50387 51034 648 Locate
trnM-CAU gene + 51215 51287 73 Locate
atpE gene − 51498 51899 402 Locate
atpB gene − 51896 53392 1497 Locate
rbcL gene + 54184 55629 1446 Locate
accD gene + 56304 57785 1482 Locate
psaI gene + 58251 58361 111 Locate
ycf4 gene + 58794 59348 555 Locate
cemA gene + 60003 60692 690 Locate
petA gene + 60900 61862 963 Locate
psbJ gene − 62851 62973 123 Locate
psbL gene − 63103 63219 117 Locate
psbF gene − 63243 63362 120 Locate
psbE gene − 63377 63628 252 Locate
petL gene + 64522 64617 96 Locate
petG gene + 64797 64910 114 Locate
trnW-CCA gene − 65026 65099 74 Locate
trnP-UGG gene − 65273 65346 74 Locate
psaJ gene + 65625 65759 135 Locate
rpl33 gene + 66204 66404 201 Locate
rps18 gene + 66575 66880 306 Locate
rpl20 gene − 67115 67501 387 Locate
rps12 gene − 68298 68411 114 Locate
clpP gene − 68534 70435 1902 Locate
psbB gene + 70889 72415 1527 Locate
psbT gene + 72598 72705 108 Locate
psbN gene − 72766 72897 132 Locate
psbH gene + 73003 73224 222 Locate
petB gene + 73350 74726 1377 Locate
petD gene + 74910 76100 1191 Locate
rpoA gene − 76277 77284 1008 Locate
rps11 gene − 77355 77771 417 Locate
rpl36 gene − 77881 77994 114 Locate
infA gene − 78090 78323 234 Locate
rps8 gene − 78444 78848 405 Locate
rpl14 gene − 79033 79401 369 Locate
rpl16 gene − 79531 80799 1269 Locate
rps3 gene − 80942 81604 663 Locate
rpl22 gene − 81589 82056 468 Locate
rps19 gene − 82126 82404 279 Locate
rpl2 gene − 82464 83951 1488 Locate
rpl23 gene − 83970 84251 282 Locate
trnI-CAU gene − 84417 84490 74 Locate
ycf2 gene + 84579 91409 6831 Locate
ycf15 gene + 91551 91748 198 Locate
trnL-CAA gene − 92009 92089 81 Locate
ndhB gene − 92641 94848 2208 Locate
rps7 gene − 95123 95590 468 Locate
rps12 gene − 95644 96437 794 Locate
trnV-GAC gene + 98053 98124 72 Locate
rrn16S gene + 98351 99841 1491 Locate
trnI-GAU gene + 100140 101159 1020 Locate
trnA-UGC gene + 101224 102101 878 Locate
rrn23S gene + 102267 105077 2811 Locate
rrn4.5S gene + 105176 105278 103 Locate
rrn5S gene + 105528 105648 121 Locate
trnR-ACG gene + 105892 105965 74 Locate
trnN-GUU gene − 106490 106561 72 Locate
ndhF gene − 107915 110146 2232 Locate
rpl32 gene + 110593 110754 162 Locate
trnL-UAG gene + 111466 111545 80 Locate
ccsA gene + 111642 112613 972 Locate
ndhD gene − 112848 114389 1542 Locate
psaC gene − 114480 114725 246 Locate
ndhE gene − 114976 115281 306 Locate
ndhG gene − 115461 115991 531 Locate
ndhI gene − 116366 116872 507 Locate
ndhA gene − 116953 119052 2100 Locate
ndhH gene − 119054 120235 1182 Locate
rps15 gene − 120335 120607 273 Locate
ycf1 gene − 120988 126519 5532 Locate
trnN-GUU gene + 126849 126920 72 Locate
trnR-ACG gene − 127445 127518 74 Locate
rrn5S gene − 127762 127882 121 Locate
rrn4.5S gene − 128132 128234 103 Locate
rrn23S gene − 128333 131143 2811 Locate
trnA-UGC gene − 131309 132186 878 Locate
trnI-GAU gene − 132251 133270 1020 Locate
rrn16S gene − 133569 135059 1491 Locate
trnV-GAC gene − 135286 135357 72 Locate
rps12 gene + 136973 137766 794 Locate
rps7 gene + 137820 138287 468 Locate
ndhB gene + 138562 140769 2208 Locate
trnL-CAA gene + 141321 141401 81 Locate
ycf15 gene − 141662 141859 198 Locate
ycf2 gene − 142001 148831 6831 Locate
trnI-CAU gene + 148920 148993 74 Locate
rpl23 gene + 149159 149440 282 Locate
rpl2 gene + 149459 150946 1488 Locate
Status Available
Accession PV870860.1
Length 151,048 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources