Salvia multicaulis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR684571.1 · 11–85 bp · −
psbA · OR684571.1 · 414–1,472 bp · −
trnK-UUU · OR684571.1 · 1,709–4,297 bp · −
matK · OR684571.1 · 2,029–3,558 bp · −
rps16 · OR684571.1 · 4,868–5,977 bp · −
trnQ-UUG · OR684571.1 · 6,531–6,602 bp · −
trnS-GCU · OR684571.1 · 7,841–7,928 bp · −
atpA · OR684571.1 · 9,758–11,281 bp · −
atpF · OR684571.1 · 11,377–12,636 bp · −
atpH · OR684571.1 · 12,916–13,161 bp · −
atpI · OR684571.1 · 14,190–14,933 bp · −
rps2 · OR684571.1 · 15,159–15,869 bp · −
rpoC2 · OR684571.1 · 16,079–20,248 bp · −
rpoC1 · OR684571.1 · 20,425–23,241 bp · −
rpoB · OR684571.1 · 23,268–26,480 bp · −
psbM · OR684571.1 · 28,885–28,989 bp · −
trnD-GUC · OR684571.1 · 29,509–29,582 bp · −
trnY-GUA · OR684571.1 · 29,693–29,776 bp · −
trnE-UUC · OR684571.1 · 29,847–29,919 bp · −
trnS-UGA · OR684571.1 · 34,586–34,678 bp · −
trnfM-CAU · OR684571.1 · 35,734–35,807 bp · −
rps14 · OR684571.1 · 35,966–36,268 bp · −
psaB · OR684571.1 · 36,391–38,595 bp · −
psaA · OR684571.1 · 38,621–40,873 bp · −
pafI · OR684571.1 · 41,653–43,605 bp · −
rps4 · OR684571.1 · 44,775–45,380 bp · −
trnT-UGU · OR684571.1 · 45,722–45,794 bp · −
ndhJ · OR684571.1 · 48,072–48,548 bp · −
ndhK · OR684571.1 · 48,659–49,336 bp · −
ndhC · OR684571.1 · 49,388–49,750 bp · −
trnV-UAC · OR684571.1 · 50,709–51,356 bp · −
atpE · OR684571.1 · 51,820–52,221 bp · −
atpB · OR684571.1 · 52,218–53,714 bp · −
psbJ · OR684571.1 · 63,162–63,284 bp · −
psbL · OR684571.1 · 63,414–63,530 bp · −
psbF · OR684571.1 · 63,554–63,673 bp · −
psbE · OR684571.1 · 63,688–63,939 bp · −
trnW-CCA · OR684571.1 · 65,337–65,410 bp · −
trnP-UGG · OR684571.1 · 65,585–65,658 bp · −
rpl20 · OR684571.1 · 67,426–67,812 bp · −
rps12 · OR684571.1 · 68,607–68,720 bp · −
rps12 · OR684571.1 · 95,966–96,759 bp · −
clpP1 · OR684571.1 · 68,843–70,770 bp · −
pbf1 · OR684571.1 · 73,101–73,232 bp · −
rpoA · OR684571.1 · 76,606–77,613 bp · −
rps11 · OR684571.1 · 77,684–78,100 bp · −
rpl36 · OR684571.1 · 78,210–78,323 bp · −
infA · OR684571.1 · 78,419–78,652 bp · −
rps8 · OR684571.1 · 78,773–79,177 bp · −
rpl14 · OR684571.1 · 79,355–79,723 bp · −
rpl16 · OR684571.1 · 79,853–81,120 bp · −
rps3 · OR684571.1 · 81,263–81,925 bp · −
rpl22 · OR684571.1 · 81,910–82,377 bp · −
rps19 · OR684571.1 · 82,447–82,725 bp · −
rpl2 · OR684571.1 · 82,785–84,272 bp · −
rpl23 · OR684571.1 · 84,291–84,572 bp · −
trnI-CAU · OR684571.1 · 84,738–84,811 bp · −
ndhB · OR684571.1 · 92,963–95,170 bp · −
rps7 · OR684571.1 · 95,445–95,912 bp · −
trnN-GUU · OR684571.1 · 106,814–106,885 bp · −
ndhF · OR684571.1 · 108,212–110,470 bp · −
ndhD · OR684571.1 · 113,171–114,571 bp · −
psaC · OR684571.1 · 114,803–115,048 bp · −
ndhE · OR684571.1 · 115,299–115,604 bp · −
ndhG · OR684571.1 · 115,784–116,314 bp · −
ndhI · OR684571.1 · 116,688–117,194 bp · −
ndhA · OR684571.1 · 117,275–119,373 bp · −
ndhH · OR684571.1 · 119,375–120,556 bp · −
rps15 · OR684571.1 · 120,656–120,928 bp · −
ycf1 · OR684571.1 · 121,310–126,841 bp · −
trnR-ACG · OR684571.1 · 127,767–127,840 bp · −
rrn5 · OR684571.1 · 128,084–128,204 bp · −
rrn4.5 · OR684571.1 · 128,454–128,556 bp · −
rrn23 · OR684571.1 · 128,655–131,465 bp · −
trnA-UGC · OR684571.1 · 131,631–132,508 bp · −
trnI-GAU · OR684571.1 · 132,573–133,594 bp · −
rrn16 · OR684571.1 · 133,893–135,383 bp · −
trnV-GAC · OR684571.1 · 135,610–135,681 bp · −
ycf15 · OR684571.1 · 141,987–142,235 bp · −
ycf2 · OR684571.1 · 142,326–149,156 bp · −
psbK · OR684571.1 · 6,989–7,168 bp · +
psbI · OR684571.1 · 7,567–7,677 bp · +
trnG-UCC · OR684571.1 · 8,646–9,376 bp · +
trnR-UCU · OR684571.1 · 9,580–9,651 bp · +
trnC-GCA · OR684571.1 · 27,619–27,689 bp · +
petN · OR684571.1 · 27,853–27,942 bp · +
trnT-GGU · OR684571.1 · 30,488–30,559 bp · +
psbD · OR684571.1 · 31,911–32,972 bp · +
psbC · OR684571.1 · 32,956–34,341 bp · +
psbZ · OR684571.1 · 35,024–35,212 bp · +
trnG-GCC · OR684571.1 · 35,490–35,560 bp · +
trnS-GGA · OR684571.1 · 44,431–44,517 bp · +
trnL-UAA · OR684571.1 · 46,474–47,047 bp · +
trnF-GAA · OR684571.1 · 47,331–47,403 bp · +
trnM-CAU · OR684571.1 · 51,537–51,609 bp · +
rbcL · OR684571.1 · 54,501–55,946 bp · +
accD · OR684571.1 · 56,621–58,099 bp · +
psaI · OR684571.1 · 58,567–58,677 bp · +
pafII · OR684571.1 · 59,110–59,664 bp · +
cemA · OR684571.1 · 60,319–61,008 bp · +
petA · OR684571.1 · 61,211–62,173 bp · +
petL · OR684571.1 · 64,833–64,928 bp · +
petG · OR684571.1 · 65,108–65,221 bp · +
psaJ · OR684571.1 · 65,937–66,071 bp · +
rpl33 · OR684571.1 · 66,516–66,716 bp · +
rps18 · OR684571.1 · 66,887–67,192 bp · +
rps12 · OR684571.1 · 137,300–138,090 bp · +
psbB · OR684571.1 · 71,224–72,750 bp · +
psbT · OR684571.1 · 72,933–73,040 bp · +
psbH · OR684571.1 · 73,338–73,559 bp · +
petB · OR684571.1 · 73,685–75,068 bp · +
petD · OR684571.1 · 75,252–76,429 bp · +
ycf2 · OR684571.1 · 84,900–91,730 bp · +
ycf15 · OR684571.1 · 91,821–92,069 bp · +
trnL-CAA · OR684571.1 · 92,330–92,410 bp · +
trnV-GAC · OR684571.1 · 98,375–98,446 bp · +
rrn16 · OR684571.1 · 98,673–100,163 bp · +
trnI-GAU · OR684571.1 · 101,449–101,585 bp · +
trnA-UGC · OR684571.1 · 101,548–102,425 bp · +
rrn23 · OR684571.1 · 102,591–105,401 bp · +
rrn4.5 · OR684571.1 · 105,500–105,602 bp · +
rrn5 · OR684571.1 · 105,852–105,972 bp · +
trnR-ACG · OR684571.1 · 106,216–106,289 bp · +
ycf1 · OR684571.1 · 107,215–108,372 bp · +
rpl32 · OR684571.1 · 110,916–111,077 bp · +
trnL-UAG · OR684571.1 · 111,789–111,868 bp · +
ccsA · OR684571.1 · 111,965–112,936 bp · +
trnN-GUU · OR684571.1 · 127,171–127,242 bp · +
rps7 · OR684571.1 · 138,144–138,611 bp · +
ndhB · OR684571.1 · 138,886–141,093 bp · +
trnL-CAA · OR684571.1 · 141,646–141,726 bp · +
trnI-CAU · OR684571.1 · 149,245–149,318 bp · +
rpl23 · OR684571.1 · 149,484–149,765 bp · +
rpl2 · OR684571.1 · 149,784–151,271 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia multicaulis
ANNOTATED PLASTOME
OR684571.1
151,373 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37843 75686 113530 151373 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnL-CAA trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 414 1472 1059 Locate
trnK-UUU gene − 1709 4297 2589 Locate
matK gene − 2029 3558 1530 Locate
rps16 gene − 4868 5977 1110 Locate
trnQ-UUG gene − 6531 6602 72 Locate
psbK gene + 6989 7168 180 Locate
psbI gene + 7567 7677 111 Locate
trnS-GCU gene − 7841 7928 88 Locate
trnG-UCC gene + 8646 9376 731 Locate
trnR-UCU gene + 9580 9651 72 Locate
atpA gene − 9758 11281 1524 Locate
atpF gene − 11377 12636 1260 Locate
atpH gene − 12916 13161 246 Locate
atpI gene − 14190 14933 744 Locate
rps2 gene − 15159 15869 711 Locate
rpoC2 gene − 16079 20248 4170 Locate
rpoC1 gene − 20425 23241 2817 Locate
rpoB gene − 23268 26480 3213 Locate
trnC-GCA gene + 27619 27689 71 Locate
petN gene + 27853 27942 90 Locate
psbM gene − 28885 28989 105 Locate
trnD-GUC gene − 29509 29582 74 Locate
trnY-GUA gene − 29693 29776 84 Locate
trnE-UUC gene − 29847 29919 73 Locate
trnT-GGU gene + 30488 30559 72 Locate
psbD gene + 31911 32972 1062 Locate
psbC gene + 32956 34341 1386 Locate
trnS-UGA gene − 34586 34678 93 Locate
psbZ gene + 35024 35212 189 Locate
trnG-GCC gene + 35490 35560 71 Locate
trnfM-CAU gene − 35734 35807 74 Locate
rps14 gene − 35966 36268 303 Locate
psaB gene − 36391 38595 2205 Locate
psaA gene − 38621 40873 2253 Locate
pafI gene − 41653 43605 1953 Locate
trnS-GGA gene + 44431 44517 87 Locate
rps4 gene − 44775 45380 606 Locate
trnT-UGU gene − 45722 45794 73 Locate
trnL-UAA gene + 46474 47047 574 Locate
trnF-GAA gene + 47331 47403 73 Locate
ndhJ gene − 48072 48548 477 Locate
ndhK gene − 48659 49336 678 Locate
ndhC gene − 49388 49750 363 Locate
trnV-UAC gene − 50709 51356 648 Locate
trnM-CAU gene + 51537 51609 73 Locate
atpE gene − 51820 52221 402 Locate
atpB gene − 52218 53714 1497 Locate
rbcL gene + 54501 55946 1446 Locate
accD gene + 56621 58099 1479 Locate
psaI gene + 58567 58677 111 Locate
pafII gene + 59110 59664 555 Locate
cemA gene + 60319 61008 690 Locate
petA gene + 61211 62173 963 Locate
psbJ gene − 63162 63284 123 Locate
psbL gene − 63414 63530 117 Locate
psbF gene − 63554 63673 120 Locate
psbE gene − 63688 63939 252 Locate
petL gene + 64833 64928 96 Locate
petG gene + 65108 65221 114 Locate
trnW-CCA gene − 65337 65410 74 Locate
trnP-UGG gene − 65585 65658 74 Locate
psaJ gene + 65937 66071 135 Locate
rpl33 gene + 66516 66716 201 Locate
rps18 gene + 66887 67192 306 Locate
rpl20 gene − 67426 67812 387 Locate
rps12 gene − 68607 68720 114 Locate
clpP1 gene − 68843 70770 1928 Locate
psbB gene + 71224 72750 1527 Locate
psbT gene + 72933 73040 108 Locate
pbf1 gene − 73101 73232 132 Locate
psbH gene + 73338 73559 222 Locate
petB gene + 73685 75068 1384 Locate
petD gene + 75252 76429 1178 Locate
rpoA gene − 76606 77613 1008 Locate
rps11 gene − 77684 78100 417 Locate
rpl36 gene − 78210 78323 114 Locate
infA gene − 78419 78652 234 Locate
rps8 gene − 78773 79177 405 Locate
rpl14 gene − 79355 79723 369 Locate
rpl16 gene − 79853 81120 1268 Locate
rps3 gene − 81263 81925 663 Locate
rpl22 gene − 81910 82377 468 Locate
rps19 gene − 82447 82725 279 Locate
rpl2 gene − 82785 84272 1488 Locate
rpl23 gene − 84291 84572 282 Locate
trnI-CAU gene − 84738 84811 74 Locate
ycf2 gene + 84900 91730 6831 Locate
ycf15 gene + 91821 92069 249 Locate
trnL-CAA gene + 92330 92410 81 Locate
ndhB gene − 92963 95170 2208 Locate
rps7 gene − 95445 95912 468 Locate
rps12 gene − 95966 96759 794 Locate
trnV-GAC gene + 98375 98446 72 Locate
rrn16 gene + 98673 100163 1491 Locate
trnI-GAU gene + 101449 101585 137 Locate
trnA-UGC gene + 101548 102425 878 Locate
rrn23 gene + 102591 105401 2811 Locate
rrn4.5 gene + 105500 105602 103 Locate
rrn5 gene + 105852 105972 121 Locate
trnR-ACG gene + 106216 106289 74 Locate
trnN-GUU gene − 106814 106885 72 Locate
ycf1 gene + 107215 108372 1158 Locate
ndhF gene − 108212 110470 2259 Locate
rpl32 gene + 110916 111077 162 Locate
trnL-UAG gene + 111789 111868 80 Locate
ccsA gene + 111965 112936 972 Locate
ndhD gene − 113171 114571 1401 Locate
psaC gene − 114803 115048 246 Locate
ndhE gene − 115299 115604 306 Locate
ndhG gene − 115784 116314 531 Locate
ndhI gene − 116688 117194 507 Locate
ndhA gene − 117275 119373 2099 Locate
ndhH gene − 119375 120556 1182 Locate
rps15 gene − 120656 120928 273 Locate
ycf1 gene − 121310 126841 5532 Locate
trnN-GUU gene + 127171 127242 72 Locate
trnR-ACG gene − 127767 127840 74 Locate
rrn5 gene − 128084 128204 121 Locate
rrn4.5 gene − 128454 128556 103 Locate
rrn23 gene − 128655 131465 2811 Locate
trnA-UGC gene − 131631 132508 878 Locate
trnI-GAU gene − 132573 133594 1022 Locate
rrn16 gene − 133893 135383 1491 Locate
trnV-GAC gene − 135610 135681 72 Locate
rps12 gene + 137300 138090 791 Locate
rps7 gene + 138144 138611 468 Locate
ndhB gene + 138886 141093 2208 Locate
trnL-CAA gene + 141646 141726 81 Locate
ycf15 gene − 141987 142235 249 Locate
ycf2 gene − 142326 149156 6831 Locate
trnI-CAU gene + 149245 149318 74 Locate
rpl23 gene + 149484 149765 282 Locate
rpl2 gene + 149784 151271 1488 Locate
Status Available
Accession OR684571.1
Length 151,373 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources