Salvia pachyphylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870865.1 · 4–77 bp · −
psbA · PV870865.1 · 397–1,455 bp · −
trnK-UUU · PV870865.1 · 1,682–4,261 bp · −
matK · PV870865.1 · 1,994–3,523 bp · −
rps16 · PV870865.1 · 4,820–5,917 bp · −
trnQ-UUG · PV870865.1 · 6,853–6,924 bp · −
trnS-GCU · PV870865.1 · 8,180–8,267 bp · −
atpA · PV870865.1 · 10,075–11,598 bp · −
atpF · PV870865.1 · 11,700–12,942 bp · −
atpH · PV870865.1 · 13,215–13,460 bp · −
atpI · PV870865.1 · 14,495–15,238 bp · −
rps2 · PV870865.1 · 15,463–16,173 bp · −
rpoC2 · PV870865.1 · 16,375–20,562 bp · −
rpoC1 · PV870865.1 · 20,728–23,542 bp · −
rpoB · PV870865.1 · 23,569–26,781 bp · −
psbM · PV870865.1 · 29,261–29,365 bp · −
trnD-GUC · PV870865.1 · 29,881–29,954 bp · −
trnY-GUA · PV870865.1 · 30,065–30,148 bp · −
trnE-UUC · PV870865.1 · 30,220–30,292 bp · −
trnS-UGA · PV870865.1 · 34,966–35,058 bp · −
trnfM-CAU · PV870865.1 · 36,074–36,146 bp · −
rps14 · PV870865.1 · 36,292–36,594 bp · −
psaB · PV870865.1 · 36,717–38,921 bp · −
psaA · PV870865.1 · 38,947–41,199 bp · −
ycf3 · PV870865.1 · 41,975–43,918 bp · −
rps4 · PV870865.1 · 45,110–45,715 bp · −
trnT-UGU · PV870865.1 · 46,077–46,149 bp · −
ndhJ · PV870865.1 · 48,316–48,792 bp · −
ndhK · PV870865.1 · 48,903–49,580 bp · −
ndhC · PV870865.1 · 49,632–49,994 bp · −
trnV-UAC · PV870865.1 · 50,940–51,581 bp · −
atpE · PV870865.1 · 52,044–52,445 bp · −
atpB · PV870865.1 · 52,442–53,938 bp · −
psbJ · PV870865.1 · 63,489–63,611 bp · −
psbL · PV870865.1 · 63,746–63,862 bp · −
psbF · PV870865.1 · 63,886–64,005 bp · −
psbE · PV870865.1 · 64,020–64,271 bp · −
trnW-CCA · PV870865.1 · 65,591–65,664 bp · −
trnP-UGG · PV870865.1 · 65,839–65,912 bp · −
rpl20 · PV870865.1 · 67,685–68,071 bp · −
rps12 · PV870865.1 · 68,873–68,986 bp · −
rps12 · PV870865.1 · 96,253–97,046 bp · −
clpP · PV870865.1 · 69,110–71,021 bp · −
psbN · PV870865.1 · 73,335–73,466 bp · −
rpoA · PV870865.1 · 76,848–77,855 bp · −
rps11 · PV870865.1 · 77,926–78,342 bp · −
rpl36 · PV870865.1 · 78,453–78,566 bp · −
infA · PV870865.1 · 78,666–78,899 bp · −
rps8 · PV870865.1 · 79,019–79,423 bp · −
rpl14 · PV870865.1 · 79,605–79,973 bp · −
rpl16 · PV870865.1 · 80,105–81,380 bp · −
rps3 · PV870865.1 · 81,523–82,185 bp · −
rpl22 · PV870865.1 · 82,170–82,637 bp · −
rps19 · PV870865.1 · 82,707–82,985 bp · −
rpl2 · PV870865.1 · 83,045–84,530 bp · −
rpl23 · PV870865.1 · 84,549–84,830 bp · −
trnI-CAU · PV870865.1 · 84,996–85,069 bp · −
trnL-CAA · PV870865.1 · 92,615–92,695 bp · −
ndhB · PV870865.1 · 93,256–95,403 bp · −
rps7 · PV870865.1 · 95,732–96,199 bp · −
trnN-GUU · PV870865.1 · 107,097–107,168 bp · −
ndhF · PV870865.1 · 108,516–110,747 bp · −
ndhD · PV870865.1 · 113,014–114,555 bp · −
psaC · PV870865.1 · 114,649–114,894 bp · −
ndhE · PV870865.1 · 115,145–115,450 bp · −
ndhG · PV870865.1 · 115,663–116,193 bp · −
ndhI · PV870865.1 · 116,574–117,080 bp · −
ndhA · PV870865.1 · 117,162–119,266 bp · −
ndhH · PV870865.1 · 119,268–120,449 bp · −
rps15 · PV870865.1 · 120,549–120,821 bp · −
ycf1 · PV870865.1 · 121,239–126,770 bp · −
trnR-ACG · PV870865.1 · 127,674–127,747 bp · −
rrn5S · PV870865.1 · 127,991–128,111 bp · −
rrn4.5S · PV870865.1 · 128,367–128,469 bp · −
rrn23S · PV870865.1 · 128,568–131,378 bp · −
trnA-UGC · PV870865.1 · 131,538–132,414 bp · −
trnI-GAU · PV870865.1 · 132,479–133,497 bp · −
rrn16S · PV870865.1 · 133,796–135,286 bp · −
trnV-GAC · PV870865.1 · 135,513–135,584 bp · −
ycf15 · PV870865.1 · 141,914–142,111 bp · −
ycf2 · PV870865.1 · 142,253–149,110 bp · −
psbK · PV870865.1 · 7,311–7,496 bp · +
psbI · PV870865.1 · 7,898–8,008 bp · +
trnG-UCC · PV870865.1 · 8,961–9,715 bp · +
trnR-UCU · PV870865.1 · 9,896–9,967 bp · +
trnC-GCA · PV870865.1 · 27,942–28,012 bp · +
petN · PV870865.1 · 28,168–28,257 bp · +
trnT-GGU · PV870865.1 · 30,851–30,922 bp · +
psbD · PV870865.1 · 32,288–33,349 bp · +
psbC · PV870865.1 · 33,297–34,718 bp · +
psbZ · PV870865.1 · 35,386–35,574 bp · +
trnG-GCC · PV870865.1 · 35,852–35,922 bp · +
trnS-GGA · PV870865.1 · 44,743–44,829 bp · +
trnL-UAA · PV870865.1 · 46,824–47,407 bp · +
trnF-GAA · PV870865.1 · 47,710–47,782 bp · +
trnM-CAU · PV870865.1 · 51,762–51,834 bp · +
rbcL · PV870865.1 · 54,739–56,172 bp · +
accD · PV870865.1 · 56,872–58,353 bp · +
psaI · PV870865.1 · 58,818–58,928 bp · +
ycf4 · PV870865.1 · 59,374–59,928 bp · +
cemA · PV870865.1 · 60,578–61,267 bp · +
petA · PV870865.1 · 61,493–62,455 bp · +
petL · PV870865.1 · 65,089–65,184 bp · +
petG · PV870865.1 · 65,363–65,476 bp · +
psaJ · PV870865.1 · 66,197–66,331 bp · +
rpl33 · PV870865.1 · 66,772–66,972 bp · +
rps18 · PV870865.1 · 67,145–67,450 bp · +
rps12 · PV870865.1 · 137,222–138,015 bp · +
psbB · PV870865.1 · 71,460–72,986 bp · +
psbT · PV870865.1 · 73,168–73,269 bp · +
psbH · PV870865.1 · 73,572–73,793 bp · +
petB · PV870865.1 · 73,919–75,293 bp · +
petD · PV870865.1 · 75,481–76,671 bp · +
ycf2 · PV870865.1 · 85,158–92,015 bp · +
ycf15 · PV870865.1 · 92,157–92,354 bp · +
trnV-GAC · PV870865.1 · 98,684–98,755 bp · +
rrn16S · PV870865.1 · 98,982–100,472 bp · +
trnI-GAU · PV870865.1 · 100,771–101,789 bp · +
trnA-UGC · PV870865.1 · 101,854–102,730 bp · +
rrn23S · PV870865.1 · 102,890–105,700 bp · +
rrn4.5S · PV870865.1 · 105,799–105,901 bp · +
rrn5S · PV870865.1 · 106,157–106,277 bp · +
trnR-ACG · PV870865.1 · 106,521–106,594 bp · +
rpl32 · PV870865.1 · 111,181–111,351 bp · +
trnL-UAG · PV870865.1 · 111,655–111,734 bp · +
ccsA · PV870865.1 · 111,831–112,808 bp · +
trnN-GUU · PV870865.1 · 127,100–127,171 bp · +
rps7 · PV870865.1 · 138,069–138,536 bp · +
ndhB · PV870865.1 · 138,865–141,012 bp · +
trnL-CAA · PV870865.1 · 141,573–141,653 bp · +
trnI-CAU · PV870865.1 · 149,199–149,272 bp · +
rpl23 · PV870865.1 · 149,438–149,719 bp · +
rpl2 · PV870865.1 · 149,738–151,223 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia pachyphylla
ANNOTATED PLASTOME
PV870865.1
151,269 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37817 75634 113452 151269 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1682 4261 2580 Locate
matK gene − 1994 3523 1530 Locate
rps16 gene − 4820 5917 1098 Locate
trnQ-UUG gene − 6853 6924 72 Locate
psbK gene + 7311 7496 186 Locate
psbI gene + 7898 8008 111 Locate
trnS-GCU gene − 8180 8267 88 Locate
trnG-UCC gene + 8961 9715 755 Locate
trnR-UCU gene + 9896 9967 72 Locate
atpA gene − 10075 11598 1524 Locate
atpF gene − 11700 12942 1243 Locate
atpH gene − 13215 13460 246 Locate
atpI gene − 14495 15238 744 Locate
rps2 gene − 15463 16173 711 Locate
rpoC2 gene − 16375 20562 4188 Locate
rpoC1 gene − 20728 23542 2815 Locate
rpoB gene − 23569 26781 3213 Locate
trnC-GCA gene + 27942 28012 71 Locate
petN gene + 28168 28257 90 Locate
psbM gene − 29261 29365 105 Locate
trnD-GUC gene − 29881 29954 74 Locate
trnY-GUA gene − 30065 30148 84 Locate
trnE-UUC gene − 30220 30292 73 Locate
trnT-GGU gene + 30851 30922 72 Locate
psbD gene + 32288 33349 1062 Locate
psbC gene + 33297 34718 1422 Locate
trnS-UGA gene − 34966 35058 93 Locate
psbZ gene + 35386 35574 189 Locate
trnG-GCC gene + 35852 35922 71 Locate
trnfM-CAU gene − 36074 36146 73 Locate
rps14 gene − 36292 36594 303 Locate
psaB gene − 36717 38921 2205 Locate
psaA gene − 38947 41199 2253 Locate
ycf3 gene − 41975 43918 1944 Locate
trnS-GGA gene + 44743 44829 87 Locate
rps4 gene − 45110 45715 606 Locate
trnT-UGU gene − 46077 46149 73 Locate
trnL-UAA gene + 46824 47407 584 Locate
trnF-GAA gene + 47710 47782 73 Locate
ndhJ gene − 48316 48792 477 Locate
ndhK gene − 48903 49580 678 Locate
ndhC gene − 49632 49994 363 Locate
trnV-UAC gene − 50940 51581 642 Locate
trnM-CAU gene + 51762 51834 73 Locate
atpE gene − 52044 52445 402 Locate
atpB gene − 52442 53938 1497 Locate
rbcL gene + 54739 56172 1434 Locate
accD gene + 56872 58353 1482 Locate
psaI gene + 58818 58928 111 Locate
ycf4 gene + 59374 59928 555 Locate
cemA gene + 60578 61267 690 Locate
petA gene + 61493 62455 963 Locate
psbJ gene − 63489 63611 123 Locate
psbL gene − 63746 63862 117 Locate
psbF gene − 63886 64005 120 Locate
psbE gene − 64020 64271 252 Locate
petL gene + 65089 65184 96 Locate
petG gene + 65363 65476 114 Locate
trnW-CCA gene − 65591 65664 74 Locate
trnP-UGG gene − 65839 65912 74 Locate
psaJ gene + 66197 66331 135 Locate
rpl33 gene + 66772 66972 201 Locate
rps18 gene + 67145 67450 306 Locate
rpl20 gene − 67685 68071 387 Locate
rps12 gene − 68873 68986 114 Locate
clpP gene − 69110 71021 1912 Locate
psbB gene + 71460 72986 1527 Locate
psbT gene + 73168 73269 102 Locate
psbN gene − 73335 73466 132 Locate
psbH gene + 73572 73793 222 Locate
petB gene + 73919 75293 1375 Locate
petD gene + 75481 76671 1191 Locate
rpoA gene − 76848 77855 1008 Locate
rps11 gene − 77926 78342 417 Locate
rpl36 gene − 78453 78566 114 Locate
infA gene − 78666 78899 234 Locate
rps8 gene − 79019 79423 405 Locate
rpl14 gene − 79605 79973 369 Locate
rpl16 gene − 80105 81380 1276 Locate
rps3 gene − 81523 82185 663 Locate
rpl22 gene − 82170 82637 468 Locate
rps19 gene − 82707 82985 279 Locate
rpl2 gene − 83045 84530 1486 Locate
rpl23 gene − 84549 84830 282 Locate
trnI-CAU gene − 84996 85069 74 Locate
ycf2 gene + 85158 92015 6858 Locate
ycf15 gene + 92157 92354 198 Locate
trnL-CAA gene − 92615 92695 81 Locate
ndhB gene − 93256 95403 2148 Locate
rps7 gene − 95732 96199 468 Locate
rps12 gene − 96253 97046 794 Locate
trnV-GAC gene + 98684 98755 72 Locate
rrn16S gene + 98982 100472 1491 Locate
trnI-GAU gene + 100771 101789 1019 Locate
trnA-UGC gene + 101854 102730 877 Locate
rrn23S gene + 102890 105700 2811 Locate
rrn4.5S gene + 105799 105901 103 Locate
rrn5S gene + 106157 106277 121 Locate
trnR-ACG gene + 106521 106594 74 Locate
trnN-GUU gene − 107097 107168 72 Locate
ndhF gene − 108516 110747 2232 Locate
rpl32 gene + 111181 111351 171 Locate
trnL-UAG gene + 111655 111734 80 Locate
ccsA gene + 111831 112808 978 Locate
ndhD gene − 113014 114555 1542 Locate
psaC gene − 114649 114894 246 Locate
ndhE gene − 115145 115450 306 Locate
ndhG gene − 115663 116193 531 Locate
ndhI gene − 116574 117080 507 Locate
ndhA gene − 117162 119266 2105 Locate
ndhH gene − 119268 120449 1182 Locate
rps15 gene − 120549 120821 273 Locate
ycf1 gene − 121239 126770 5532 Locate
trnN-GUU gene + 127100 127171 72 Locate
trnR-ACG gene − 127674 127747 74 Locate
rrn5S gene − 127991 128111 121 Locate
rrn4.5S gene − 128367 128469 103 Locate
rrn23S gene − 128568 131378 2811 Locate
trnA-UGC gene − 131538 132414 877 Locate
trnI-GAU gene − 132479 133497 1019 Locate
rrn16S gene − 133796 135286 1491 Locate
trnV-GAC gene − 135513 135584 72 Locate
rps12 gene + 137222 138015 794 Locate
rps7 gene + 138069 138536 468 Locate
ndhB gene + 138865 141012 2148 Locate
trnL-CAA gene + 141573 141653 81 Locate
ycf15 gene − 141914 142111 198 Locate
ycf2 gene − 142253 149110 6858 Locate
trnI-CAU gene + 149199 149272 74 Locate
rpl23 gene + 149438 149719 282 Locate
rpl2 gene + 149738 151223 1486 Locate
Status Available
Accession PV870865.1
Length 151,269 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources