Salvia sonomensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870868.1 · 17–90 bp · −
psbA · PV870868.1 · 410–1,468 bp · −
trnK-UUU · PV870868.1 · 1,695–4,274 bp · −
matK · PV870868.1 · 2,007–3,536 bp · −
rps16 · PV870868.1 · 4,833–5,930 bp · −
trnQ-UUG · PV870868.1 · 6,844–6,915 bp · −
trnS-GCU · PV870868.1 · 8,171–8,258 bp · −
atpA · PV870868.1 · 10,066–11,589 bp · −
atpF · PV870868.1 · 11,691–12,933 bp · −
atpH · PV870868.1 · 13,206–13,451 bp · −
atpI · PV870868.1 · 14,486–15,229 bp · −
rps2 · PV870868.1 · 15,454–16,164 bp · −
rpoC2 · PV870868.1 · 16,366–20,553 bp · −
rpoC1 · PV870868.1 · 20,719–23,533 bp · −
rpoB · PV870868.1 · 23,560–26,772 bp · −
psbM · PV870868.1 · 29,253–29,357 bp · −
trnD-GUC · PV870868.1 · 29,873–29,946 bp · −
trnY-GUA · PV870868.1 · 30,057–30,140 bp · −
trnE-UUC · PV870868.1 · 30,212–30,284 bp · −
trnS-UGA · PV870868.1 · 34,958–35,050 bp · −
trnfM-CAU · PV870868.1 · 36,066–36,139 bp · −
rps14 · PV870868.1 · 36,284–36,586 bp · −
psaB · PV870868.1 · 36,709–38,913 bp · −
psaA · PV870868.1 · 38,939–41,191 bp · −
ycf3 · PV870868.1 · 41,967–43,910 bp · −
rps4 · PV870868.1 · 45,102–45,707 bp · −
trnT-UGU · PV870868.1 · 46,068–46,140 bp · −
ndhJ · PV870868.1 · 48,307–48,783 bp · −
ndhK · PV870868.1 · 48,894–49,571 bp · −
ndhC · PV870868.1 · 49,623–49,985 bp · −
trnV-UAC · PV870868.1 · 50,931–51,572 bp · −
atpE · PV870868.1 · 52,035–52,436 bp · −
atpB · PV870868.1 · 52,433–53,929 bp · −
psbJ · PV870868.1 · 63,475–63,597 bp · −
psbL · PV870868.1 · 63,732–63,848 bp · −
psbF · PV870868.1 · 63,872–63,991 bp · −
psbE · PV870868.1 · 64,006–64,257 bp · −
trnW-CCA · PV870868.1 · 65,577–65,650 bp · −
trnP-UGG · PV870868.1 · 65,825–65,898 bp · −
rpl20 · PV870868.1 · 67,671–68,057 bp · −
rps12 · PV870868.1 · 68,859–68,972 bp · −
rps12 · PV870868.1 · 96,245–97,038 bp · −
clpP · PV870868.1 · 69,096–71,007 bp · −
psbN · PV870868.1 · 73,321–73,452 bp · −
rpoA · PV870868.1 · 76,834–77,841 bp · −
rps11 · PV870868.1 · 77,912–78,328 bp · −
rpl36 · PV870868.1 · 78,439–78,552 bp · −
infA · PV870868.1 · 78,652–78,885 bp · −
rps8 · PV870868.1 · 79,005–79,409 bp · −
rpl14 · PV870868.1 · 79,591–79,959 bp · −
rpl16 · PV870868.1 · 80,091–81,372 bp · −
rps3 · PV870868.1 · 81,515–82,177 bp · −
rpl22 · PV870868.1 · 82,162–82,629 bp · −
rps19 · PV870868.1 · 82,699–82,977 bp · −
rpl2 · PV870868.1 · 83,037–84,522 bp · −
rpl23 · PV870868.1 · 84,541–84,822 bp · −
trnI-CAU · PV870868.1 · 84,988–85,061 bp · −
trnL-CAA · PV870868.1 · 92,607–92,687 bp · −
ndhB · PV870868.1 · 93,248–95,395 bp · −
rps7 · PV870868.1 · 95,724–96,191 bp · −
trnN-GUU · PV870868.1 · 107,089–107,160 bp · −
ndhF · PV870868.1 · 108,508–110,739 bp · −
ndhD · PV870868.1 · 113,006–114,547 bp · −
psaC · PV870868.1 · 114,641–114,886 bp · −
ndhE · PV870868.1 · 115,137–115,442 bp · −
ndhG · PV870868.1 · 115,655–116,185 bp · −
ndhI · PV870868.1 · 116,566–117,072 bp · −
ndhA · PV870868.1 · 117,154–119,258 bp · −
ndhH · PV870868.1 · 119,260–120,441 bp · −
rps15 · PV870868.1 · 120,541–120,813 bp · −
ycf1 · PV870868.1 · 121,231–126,762 bp · −
trnR-ACG · PV870868.1 · 127,666–127,739 bp · −
rrn5S · PV870868.1 · 127,983–128,103 bp · −
rrn4.5S · PV870868.1 · 128,359–128,461 bp · −
rrn23S · PV870868.1 · 128,560–131,370 bp · −
trnA-UGC · PV870868.1 · 131,530–132,406 bp · −
trnI-GAU · PV870868.1 · 132,471–133,489 bp · −
rrn16S · PV870868.1 · 133,788–135,278 bp · −
trnV-GAC · PV870868.1 · 135,505–135,576 bp · −
ycf15 · PV870868.1 · 141,906–142,103 bp · −
ycf2 · PV870868.1 · 142,245–149,102 bp · −
psbK · PV870868.1 · 7,302–7,487 bp · +
psbI · PV870868.1 · 7,889–7,999 bp · +
trnG-UCC · PV870868.1 · 8,952–9,706 bp · +
trnR-UCU · PV870868.1 · 9,887–9,958 bp · +
trnC-GCA · PV870868.1 · 27,934–28,004 bp · +
petN · PV870868.1 · 28,160–28,249 bp · +
trnT-GGU · PV870868.1 · 30,843–30,914 bp · +
psbD · PV870868.1 · 32,280–33,341 bp · +
psbC · PV870868.1 · 33,289–34,710 bp · +
psbZ · PV870868.1 · 35,378–35,566 bp · +
trnG-GCC · PV870868.1 · 35,844–35,914 bp · +
trnS-GGA · PV870868.1 · 44,735–44,821 bp · +
trnL-UAA · PV870868.1 · 46,815–47,398 bp · +
trnF-GAA · PV870868.1 · 47,701–47,773 bp · +
trnM-CAU · PV870868.1 · 51,753–51,825 bp · +
rbcL · PV870868.1 · 54,725–56,158 bp · +
accD · PV870868.1 · 56,858–58,339 bp · +
psaI · PV870868.1 · 58,804–58,914 bp · +
ycf4 · PV870868.1 · 59,360–59,914 bp · +
cemA · PV870868.1 · 60,564–61,253 bp · +
petA · PV870868.1 · 61,479–62,441 bp · +
petL · PV870868.1 · 65,075–65,170 bp · +
petG · PV870868.1 · 65,349–65,462 bp · +
psaJ · PV870868.1 · 66,183–66,317 bp · +
rpl33 · PV870868.1 · 66,758–66,958 bp · +
rps18 · PV870868.1 · 67,131–67,436 bp · +
rps12 · PV870868.1 · 137,214–138,007 bp · +
psbB · PV870868.1 · 71,446–72,972 bp · +
psbT · PV870868.1 · 73,154–73,255 bp · +
psbH · PV870868.1 · 73,558–73,779 bp · +
petB · PV870868.1 · 73,905–75,279 bp · +
petD · PV870868.1 · 75,467–76,657 bp · +
ycf2 · PV870868.1 · 85,150–92,007 bp · +
ycf15 · PV870868.1 · 92,149–92,346 bp · +
trnV-GAC · PV870868.1 · 98,676–98,747 bp · +
rrn16S · PV870868.1 · 98,974–100,464 bp · +
trnI-GAU · PV870868.1 · 100,763–101,781 bp · +
trnA-UGC · PV870868.1 · 101,846–102,722 bp · +
rrn23S · PV870868.1 · 102,882–105,692 bp · +
rrn4.5S · PV870868.1 · 105,791–105,893 bp · +
rrn5S · PV870868.1 · 106,149–106,269 bp · +
trnR-ACG · PV870868.1 · 106,513–106,586 bp · +
rpl32 · PV870868.1 · 111,173–111,343 bp · +
trnL-UAG · PV870868.1 · 111,647–111,726 bp · +
ccsA · PV870868.1 · 111,823–112,800 bp · +
trnN-GUU · PV870868.1 · 127,092–127,163 bp · +
rps7 · PV870868.1 · 138,061–138,528 bp · +
ndhB · PV870868.1 · 138,857–141,004 bp · +
trnL-CAA · PV870868.1 · 141,565–141,645 bp · +
trnI-CAU · PV870868.1 · 149,191–149,264 bp · +
rpl23 · PV870868.1 · 149,430–149,711 bp · +
rpl2 · PV870868.1 · 149,730–151,215 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia sonomensis
ANNOTATED PLASTOME
PV870868.1
151,317 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37829 75658 113488 151317 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 17 90 74 Locate
psbA gene − 410 1468 1059 Locate
trnK-UUU gene − 1695 4274 2580 Locate
matK gene − 2007 3536 1530 Locate
rps16 gene − 4833 5930 1098 Locate
trnQ-UUG gene − 6844 6915 72 Locate
psbK gene + 7302 7487 186 Locate
psbI gene + 7889 7999 111 Locate
trnS-GCU gene − 8171 8258 88 Locate
trnG-UCC gene + 8952 9706 755 Locate
trnR-UCU gene + 9887 9958 72 Locate
atpA gene − 10066 11589 1524 Locate
atpF gene − 11691 12933 1243 Locate
atpH gene − 13206 13451 246 Locate
atpI gene − 14486 15229 744 Locate
rps2 gene − 15454 16164 711 Locate
rpoC2 gene − 16366 20553 4188 Locate
rpoC1 gene − 20719 23533 2815 Locate
rpoB gene − 23560 26772 3213 Locate
trnC-GCA gene + 27934 28004 71 Locate
petN gene + 28160 28249 90 Locate
psbM gene − 29253 29357 105 Locate
trnD-GUC gene − 29873 29946 74 Locate
trnY-GUA gene − 30057 30140 84 Locate
trnE-UUC gene − 30212 30284 73 Locate
trnT-GGU gene + 30843 30914 72 Locate
psbD gene + 32280 33341 1062 Locate
psbC gene + 33289 34710 1422 Locate
trnS-UGA gene − 34958 35050 93 Locate
psbZ gene + 35378 35566 189 Locate
trnG-GCC gene + 35844 35914 71 Locate
trnfM-CAU gene − 36066 36139 74 Locate
rps14 gene − 36284 36586 303 Locate
psaB gene − 36709 38913 2205 Locate
psaA gene − 38939 41191 2253 Locate
ycf3 gene − 41967 43910 1944 Locate
trnS-GGA gene + 44735 44821 87 Locate
rps4 gene − 45102 45707 606 Locate
trnT-UGU gene − 46068 46140 73 Locate
trnL-UAA gene + 46815 47398 584 Locate
trnF-GAA gene + 47701 47773 73 Locate
ndhJ gene − 48307 48783 477 Locate
ndhK gene − 48894 49571 678 Locate
ndhC gene − 49623 49985 363 Locate
trnV-UAC gene − 50931 51572 642 Locate
trnM-CAU gene + 51753 51825 73 Locate
atpE gene − 52035 52436 402 Locate
atpB gene − 52433 53929 1497 Locate
rbcL gene + 54725 56158 1434 Locate
accD gene + 56858 58339 1482 Locate
psaI gene + 58804 58914 111 Locate
ycf4 gene + 59360 59914 555 Locate
cemA gene + 60564 61253 690 Locate
petA gene + 61479 62441 963 Locate
psbJ gene − 63475 63597 123 Locate
psbL gene − 63732 63848 117 Locate
psbF gene − 63872 63991 120 Locate
psbE gene − 64006 64257 252 Locate
petL gene + 65075 65170 96 Locate
petG gene + 65349 65462 114 Locate
trnW-CCA gene − 65577 65650 74 Locate
trnP-UGG gene − 65825 65898 74 Locate
psaJ gene + 66183 66317 135 Locate
rpl33 gene + 66758 66958 201 Locate
rps18 gene + 67131 67436 306 Locate
rpl20 gene − 67671 68057 387 Locate
rps12 gene − 68859 68972 114 Locate
clpP gene − 69096 71007 1912 Locate
psbB gene + 71446 72972 1527 Locate
psbT gene + 73154 73255 102 Locate
psbN gene − 73321 73452 132 Locate
psbH gene + 73558 73779 222 Locate
petB gene + 73905 75279 1375 Locate
petD gene + 75467 76657 1191 Locate
rpoA gene − 76834 77841 1008 Locate
rps11 gene − 77912 78328 417 Locate
rpl36 gene − 78439 78552 114 Locate
infA gene − 78652 78885 234 Locate
rps8 gene − 79005 79409 405 Locate
rpl14 gene − 79591 79959 369 Locate
rpl16 gene − 80091 81372 1282 Locate
rps3 gene − 81515 82177 663 Locate
rpl22 gene − 82162 82629 468 Locate
rps19 gene − 82699 82977 279 Locate
rpl2 gene − 83037 84522 1486 Locate
rpl23 gene − 84541 84822 282 Locate
trnI-CAU gene − 84988 85061 74 Locate
ycf2 gene + 85150 92007 6858 Locate
ycf15 gene + 92149 92346 198 Locate
trnL-CAA gene − 92607 92687 81 Locate
ndhB gene − 93248 95395 2148 Locate
rps7 gene − 95724 96191 468 Locate
rps12 gene − 96245 97038 794 Locate
trnV-GAC gene + 98676 98747 72 Locate
rrn16S gene + 98974 100464 1491 Locate
trnI-GAU gene + 100763 101781 1019 Locate
trnA-UGC gene + 101846 102722 877 Locate
rrn23S gene + 102882 105692 2811 Locate
rrn4.5S gene + 105791 105893 103 Locate
rrn5S gene + 106149 106269 121 Locate
trnR-ACG gene + 106513 106586 74 Locate
trnN-GUU gene − 107089 107160 72 Locate
ndhF gene − 108508 110739 2232 Locate
rpl32 gene + 111173 111343 171 Locate
trnL-UAG gene + 111647 111726 80 Locate
ccsA gene + 111823 112800 978 Locate
ndhD gene − 113006 114547 1542 Locate
psaC gene − 114641 114886 246 Locate
ndhE gene − 115137 115442 306 Locate
ndhG gene − 115655 116185 531 Locate
ndhI gene − 116566 117072 507 Locate
ndhA gene − 117154 119258 2105 Locate
ndhH gene − 119260 120441 1182 Locate
rps15 gene − 120541 120813 273 Locate
ycf1 gene − 121231 126762 5532 Locate
trnN-GUU gene + 127092 127163 72 Locate
trnR-ACG gene − 127666 127739 74 Locate
rrn5S gene − 127983 128103 121 Locate
rrn4.5S gene − 128359 128461 103 Locate
rrn23S gene − 128560 131370 2811 Locate
trnA-UGC gene − 131530 132406 877 Locate
trnI-GAU gene − 132471 133489 1019 Locate
rrn16S gene − 133788 135278 1491 Locate
trnV-GAC gene − 135505 135576 72 Locate
rps12 gene + 137214 138007 794 Locate
rps7 gene + 138061 138528 468 Locate
ndhB gene + 138857 141004 2148 Locate
trnL-CAA gene + 141565 141645 81 Locate
ycf15 gene − 141906 142103 198 Locate
ycf2 gene − 142245 149102 6858 Locate
trnI-CAU gene + 149191 149264 74 Locate
rpl23 gene + 149430 149711 282 Locate
rpl2 gene + 149730 151215 1486 Locate
Status Available
Accession PV870868.1
Length 151,317 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources