Salvia spathacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV870869.1 · 4–77 bp · −
psbA · PV870869.1 · 397–1,455 bp · −
trnK-UUU · PV870869.1 · 1,682–4,261 bp · −
matK · PV870869.1 · 1,994–3,523 bp · −
rps16 · PV870869.1 · 4,821–5,918 bp · −
trnQ-UUG · PV870869.1 · 6,880–6,951 bp · −
trnS-GCU · PV870869.1 · 8,205–8,292 bp · −
atpA · PV870869.1 · 10,100–11,623 bp · −
atpF · PV870869.1 · 11,725–12,967 bp · −
atpH · PV870869.1 · 13,240–13,485 bp · −
atpI · PV870869.1 · 14,521–15,264 bp · −
rps2 · PV870869.1 · 15,494–16,204 bp · −
rpoC2 · PV870869.1 · 16,405–20,592 bp · −
rpoC1 · PV870869.1 · 20,751–23,565 bp · −
rpoB · PV870869.1 · 23,592–26,804 bp · −
psbM · PV870869.1 · 29,288–29,392 bp · −
trnD-GUC · PV870869.1 · 29,908–29,981 bp · −
trnY-GUA · PV870869.1 · 30,092–30,175 bp · −
trnE-UUC · PV870869.1 · 30,248–30,320 bp · −
trnS-UGA · PV870869.1 · 34,993–35,085 bp · −
trnfM-CAU · PV870869.1 · 36,101–36,174 bp · −
rps14 · PV870869.1 · 36,319–36,621 bp · −
psaB · PV870869.1 · 36,744–38,948 bp · −
psaA · PV870869.1 · 38,974–41,226 bp · −
ycf3 · PV870869.1 · 42,002–43,947 bp · −
rps4 · PV870869.1 · 45,132–45,737 bp · −
trnT-UGU · PV870869.1 · 46,110–46,182 bp · −
ndhJ · PV870869.1 · 48,322–48,798 bp · −
ndhK · PV870869.1 · 48,905–49,582 bp · −
ndhC · PV870869.1 · 49,634–49,996 bp · −
trnV-UAC · PV870869.1 · 50,942–51,583 bp · −
atpE · PV870869.1 · 52,046–52,447 bp · −
atpB · PV870869.1 · 52,444–53,940 bp · −
psbJ · PV870869.1 · 63,498–63,620 bp · −
psbL · PV870869.1 · 63,755–63,871 bp · −
psbF · PV870869.1 · 63,895–64,014 bp · −
psbE · PV870869.1 · 64,029–64,280 bp · −
trnW-CCA · PV870869.1 · 65,600–65,673 bp · −
trnP-UGG · PV870869.1 · 65,848–65,921 bp · −
rpl20 · PV870869.1 · 67,695–68,081 bp · −
rps12 · PV870869.1 · 68,881–68,994 bp · −
rps12 · PV870869.1 · 96,273–97,066 bp · −
clpP · PV870869.1 · 69,118–71,029 bp · −
psbN · PV870869.1 · 73,344–73,475 bp · −
rpoA · PV870869.1 · 76,873–77,880 bp · −
rps11 · PV870869.1 · 77,951–78,367 bp · −
rpl36 · PV870869.1 · 78,478–78,591 bp · −
infA · PV870869.1 · 78,691–78,924 bp · −
rps8 · PV870869.1 · 79,044–79,448 bp · −
rpl14 · PV870869.1 · 79,631–79,999 bp · −
rpl16 · PV870869.1 · 80,131–81,400 bp · −
rps3 · PV870869.1 · 81,543–82,205 bp · −
rpl22 · PV870869.1 · 82,190–82,657 bp · −
rps19 · PV870869.1 · 82,727–83,005 bp · −
rpl2 · PV870869.1 · 83,065–84,550 bp · −
rpl23 · PV870869.1 · 84,569–84,850 bp · −
trnI-CAU · PV870869.1 · 85,016–85,089 bp · −
trnL-CAA · PV870869.1 · 92,635–92,715 bp · −
ndhB · PV870869.1 · 93,276–95,423 bp · −
rps7 · PV870869.1 · 95,752–96,219 bp · −
trnN-GUU · PV870869.1 · 107,117–107,188 bp · −
ndhF · PV870869.1 · 108,536–110,767 bp · −
ndhD · PV870869.1 · 113,469–115,010 bp · −
psaC · PV870869.1 · 115,105–115,350 bp · −
ndhE · PV870869.1 · 115,601–115,906 bp · −
ndhG · PV870869.1 · 116,119–116,649 bp · −
ndhI · PV870869.1 · 117,033–117,539 bp · −
ndhA · PV870869.1 · 117,621–119,724 bp · −
ndhH · PV870869.1 · 119,726–120,907 bp · −
rps15 · PV870869.1 · 121,007–121,279 bp · −
ycf1 · PV870869.1 · 121,697–127,228 bp · −
trnR-ACG · PV870869.1 · 128,132–128,205 bp · −
rrn5S · PV870869.1 · 128,449–128,569 bp · −
rrn4.5S · PV870869.1 · 128,825–128,927 bp · −
rrn23S · PV870869.1 · 129,026–131,836 bp · −
trnA-UGC · PV870869.1 · 131,996–132,872 bp · −
trnI-GAU · PV870869.1 · 132,937–133,955 bp · −
rrn16S · PV870869.1 · 134,254–135,744 bp · −
trnV-GAC · PV870869.1 · 135,971–136,042 bp · −
ycf15 · PV870869.1 · 142,372–142,569 bp · −
ycf2 · PV870869.1 · 142,711–149,568 bp · −
psbK · PV870869.1 · 7,338–7,523 bp · +
psbI · PV870869.1 · 7,925–8,035 bp · +
trnG-UCC · PV870869.1 · 8,986–9,740 bp · +
trnR-UCU · PV870869.1 · 9,921–9,992 bp · +
trnC-GCA · PV870869.1 · 27,970–28,040 bp · +
petN · PV870869.1 · 28,196–28,285 bp · +
trnT-GGU · PV870869.1 · 30,879–30,950 bp · +
psbD · PV870869.1 · 32,317–33,378 bp · +
psbC · PV870869.1 · 33,326–34,747 bp · +
psbZ · PV870869.1 · 35,413–35,601 bp · +
trnG-GCC · PV870869.1 · 35,879–35,949 bp · +
trnS-GGA · PV870869.1 · 44,772–44,858 bp · +
trnL-UAA · PV870869.1 · 46,843–47,413 bp · +
trnF-GAA · PV870869.1 · 47,716–47,788 bp · +
trnM-CAU · PV870869.1 · 51,764–51,836 bp · +
rbcL · PV870869.1 · 54,741–56,174 bp · +
accD · PV870869.1 · 56,874–58,355 bp · +
psaI · PV870869.1 · 58,820–58,930 bp · +
ycf4 · PV870869.1 · 59,376–59,930 bp · +
cemA · PV870869.1 · 60,581–61,270 bp · +
petA · PV870869.1 · 61,496–62,458 bp · +
petL · PV870869.1 · 65,098–65,193 bp · +
petG · PV870869.1 · 65,372–65,485 bp · +
psaJ · PV870869.1 · 66,206–66,340 bp · +
rpl33 · PV870869.1 · 66,781–66,981 bp · +
rps18 · PV870869.1 · 67,154–67,459 bp · +
rps12 · PV870869.1 · 137,680–138,473 bp · +
psbB · PV870869.1 · 71,468–72,994 bp · +
psbT · PV870869.1 · 73,177–73,278 bp · +
psbH · PV870869.1 · 73,581–73,802 bp · +
petB · PV870869.1 · 73,928–75,318 bp · +
petD · PV870869.1 · 75,506–76,696 bp · +
ycf2 · PV870869.1 · 85,178–92,035 bp · +
ycf15 · PV870869.1 · 92,177–92,374 bp · +
trnV-GAC · PV870869.1 · 98,704–98,775 bp · +
rrn16S · PV870869.1 · 99,002–100,492 bp · +
trnI-GAU · PV870869.1 · 100,791–101,809 bp · +
trnA-UGC · PV870869.1 · 101,874–102,750 bp · +
rrn23S · PV870869.1 · 102,910–105,720 bp · +
rrn4.5S · PV870869.1 · 105,819–105,921 bp · +
rrn5S · PV870869.1 · 106,177–106,297 bp · +
trnR-ACG · PV870869.1 · 106,541–106,614 bp · +
rpl32 · PV870869.1 · 111,202–111,372 bp · +
trnL-UAG · PV870869.1 · 112,110–112,189 bp · +
ccsA · PV870869.1 · 112,286–113,263 bp · +
trnN-GUU · PV870869.1 · 127,558–127,629 bp · +
rps7 · PV870869.1 · 138,527–138,994 bp · +
ndhB · PV870869.1 · 139,323–141,470 bp · +
trnL-CAA · PV870869.1 · 142,031–142,111 bp · +
trnI-CAU · PV870869.1 · 149,657–149,730 bp · +
rpl23 · PV870869.1 · 149,896–150,177 bp · +
rpl2 · PV870869.1 · 150,196–151,681 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia spathacea
ANNOTATED PLASTOME
PV870869.1
151,727 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37932 75864 113795 151727 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1682 4261 2580 Locate
matK gene − 1994 3523 1530 Locate
rps16 gene − 4821 5918 1098 Locate
trnQ-UUG gene − 6880 6951 72 Locate
psbK gene + 7338 7523 186 Locate
psbI gene + 7925 8035 111 Locate
trnS-GCU gene − 8205 8292 88 Locate
trnG-UCC gene + 8986 9740 755 Locate
trnR-UCU gene + 9921 9992 72 Locate
atpA gene − 10100 11623 1524 Locate
atpF gene − 11725 12967 1243 Locate
atpH gene − 13240 13485 246 Locate
atpI gene − 14521 15264 744 Locate
rps2 gene − 15494 16204 711 Locate
rpoC2 gene − 16405 20592 4188 Locate
rpoC1 gene − 20751 23565 2815 Locate
rpoB gene − 23592 26804 3213 Locate
trnC-GCA gene + 27970 28040 71 Locate
petN gene + 28196 28285 90 Locate
psbM gene − 29288 29392 105 Locate
trnD-GUC gene − 29908 29981 74 Locate
trnY-GUA gene − 30092 30175 84 Locate
trnE-UUC gene − 30248 30320 73 Locate
trnT-GGU gene + 30879 30950 72 Locate
psbD gene + 32317 33378 1062 Locate
psbC gene + 33326 34747 1422 Locate
trnS-UGA gene − 34993 35085 93 Locate
psbZ gene + 35413 35601 189 Locate
trnG-GCC gene + 35879 35949 71 Locate
trnfM-CAU gene − 36101 36174 74 Locate
rps14 gene − 36319 36621 303 Locate
psaB gene − 36744 38948 2205 Locate
psaA gene − 38974 41226 2253 Locate
ycf3 gene − 42002 43947 1946 Locate
trnS-GGA gene + 44772 44858 87 Locate
rps4 gene − 45132 45737 606 Locate
trnT-UGU gene − 46110 46182 73 Locate
trnL-UAA gene + 46843 47413 571 Locate
trnF-GAA gene + 47716 47788 73 Locate
ndhJ gene − 48322 48798 477 Locate
ndhK gene − 48905 49582 678 Locate
ndhC gene − 49634 49996 363 Locate
trnV-UAC gene − 50942 51583 642 Locate
trnM-CAU gene + 51764 51836 73 Locate
atpE gene − 52046 52447 402 Locate
atpB gene − 52444 53940 1497 Locate
rbcL gene + 54741 56174 1434 Locate
accD gene + 56874 58355 1482 Locate
psaI gene + 58820 58930 111 Locate
ycf4 gene + 59376 59930 555 Locate
cemA gene + 60581 61270 690 Locate
petA gene + 61496 62458 963 Locate
psbJ gene − 63498 63620 123 Locate
psbL gene − 63755 63871 117 Locate
psbF gene − 63895 64014 120 Locate
psbE gene − 64029 64280 252 Locate
petL gene + 65098 65193 96 Locate
petG gene + 65372 65485 114 Locate
trnW-CCA gene − 65600 65673 74 Locate
trnP-UGG gene − 65848 65921 74 Locate
psaJ gene + 66206 66340 135 Locate
rpl33 gene + 66781 66981 201 Locate
rps18 gene + 67154 67459 306 Locate
rpl20 gene − 67695 68081 387 Locate
rps12 gene − 68881 68994 114 Locate
clpP gene − 69118 71029 1912 Locate
psbB gene + 71468 72994 1527 Locate
psbT gene + 73177 73278 102 Locate
psbN gene − 73344 73475 132 Locate
psbH gene + 73581 73802 222 Locate
petB gene + 73928 75318 1391 Locate
petD gene + 75506 76696 1191 Locate
rpoA gene − 76873 77880 1008 Locate
rps11 gene − 77951 78367 417 Locate
rpl36 gene − 78478 78591 114 Locate
infA gene − 78691 78924 234 Locate
rps8 gene − 79044 79448 405 Locate
rpl14 gene − 79631 79999 369 Locate
rpl16 gene − 80131 81400 1270 Locate
rps3 gene − 81543 82205 663 Locate
rpl22 gene − 82190 82657 468 Locate
rps19 gene − 82727 83005 279 Locate
rpl2 gene − 83065 84550 1486 Locate
rpl23 gene − 84569 84850 282 Locate
trnI-CAU gene − 85016 85089 74 Locate
ycf2 gene + 85178 92035 6858 Locate
ycf15 gene + 92177 92374 198 Locate
trnL-CAA gene − 92635 92715 81 Locate
ndhB gene − 93276 95423 2148 Locate
rps7 gene − 95752 96219 468 Locate
rps12 gene − 96273 97066 794 Locate
trnV-GAC gene + 98704 98775 72 Locate
rrn16S gene + 99002 100492 1491 Locate
trnI-GAU gene + 100791 101809 1019 Locate
trnA-UGC gene + 101874 102750 877 Locate
rrn23S gene + 102910 105720 2811 Locate
rrn4.5S gene + 105819 105921 103 Locate
rrn5S gene + 106177 106297 121 Locate
trnR-ACG gene + 106541 106614 74 Locate
trnN-GUU gene − 107117 107188 72 Locate
ndhF gene − 108536 110767 2232 Locate
rpl32 gene + 111202 111372 171 Locate
trnL-UAG gene + 112110 112189 80 Locate
ccsA gene + 112286 113263 978 Locate
ndhD gene − 113469 115010 1542 Locate
psaC gene − 115105 115350 246 Locate
ndhE gene − 115601 115906 306 Locate
ndhG gene − 116119 116649 531 Locate
ndhI gene − 117033 117539 507 Locate
ndhA gene − 117621 119724 2104 Locate
ndhH gene − 119726 120907 1182 Locate
rps15 gene − 121007 121279 273 Locate
ycf1 gene − 121697 127228 5532 Locate
trnN-GUU gene + 127558 127629 72 Locate
trnR-ACG gene − 128132 128205 74 Locate
rrn5S gene − 128449 128569 121 Locate
rrn4.5S gene − 128825 128927 103 Locate
rrn23S gene − 129026 131836 2811 Locate
trnA-UGC gene − 131996 132872 877 Locate
trnI-GAU gene − 132937 133955 1019 Locate
rrn16S gene − 134254 135744 1491 Locate
trnV-GAC gene − 135971 136042 72 Locate
rps12 gene + 137680 138473 794 Locate
rps7 gene + 138527 138994 468 Locate
ndhB gene + 139323 141470 2148 Locate
trnL-CAA gene + 142031 142111 81 Locate
ycf15 gene − 142372 142569 198 Locate
ycf2 gene − 142711 149568 6858 Locate
trnI-CAU gene + 149657 149730 74 Locate
rpl23 gene + 149896 150177 282 Locate
rpl2 gene + 150196 151681 1486 Locate
Status Available
Accession PV870869.1
Length 151,727 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources