Schnabelia nepetifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_088035.1 · 1–76 bp · −
psbA · NC_088035.1 · 385–1,443 bp · −
trnK-UUU · NC_088035.1 · 1,688–4,286 bp · −
matK · NC_088035.1 · 2,017–3,552 bp · −
rps16 · NC_088035.1 · 5,228–6,446 bp · −
trnQ-UUG · NC_088035.1 · 6,976–7,047 bp · −
trnS-GCU · NC_088035.1 · 8,187–8,274 bp · −
atpA · NC_088035.1 · 10,180–11,703 bp · −
atpF · NC_088035.1 · 11,794–13,037 bp · −
atpH · NC_088035.1 · 13,409–13,654 bp · −
atpI · NC_088035.1 · 14,620–15,363 bp · −
rps2 · NC_088035.1 · 15,596–16,306 bp · −
rpoC2 · NC_088035.1 · 16,573–20,718 bp · −
rpoC1 · NC_088035.1 · 20,884–23,709 bp · −
rpoB · NC_088035.1 · 23,736–26,948 bp · −
psbM · NC_088035.1 · 29,956–30,060 bp · −
trnD-GUC · NC_088035.1 · 30,573–30,646 bp · −
trnY-GUA · NC_088035.1 · 30,751–30,834 bp · −
trnE-UUC · NC_088035.1 · 30,894–30,966 bp · −
trnS-UGA · NC_088035.1 · 35,598–35,689 bp · −
trnfM-CAU · NC_088035.1 · 36,715–36,788 bp · −
rps14 · NC_088035.1 · 36,933–37,235 bp · −
psaB · NC_088035.1 · 37,350–39,554 bp · −
psaA · NC_088035.1 · 39,580–41,832 bp · −
ycf3 · NC_088035.1 · 42,581–44,528 bp · −
rps4 · NC_088035.1 · 45,507–46,112 bp · −
trnT-UGU · NC_088035.1 · 46,472–46,544 bp · −
ndhJ · NC_088035.1 · 48,612–49,088 bp · −
ndhK · NC_088035.1 · 49,206–49,883 bp · −
ndhC · NC_088035.1 · 49,937–50,299 bp · −
trnV-UAC · NC_088035.1 · 50,935–51,605 bp · −
atpE · NC_088035.1 · 52,059–52,460 bp · −
atpB · NC_088035.1 · 52,457–53,953 bp · −
psbJ · NC_088035.1 · 62,964–63,086 bp · −
psbL · NC_088035.1 · 63,228–63,344 bp · −
psbF · NC_088035.1 · 63,368–63,487 bp · −
psbE · NC_088035.1 · 63,502–63,753 bp · −
trnW-CCA · NC_088035.1 · 65,181–65,254 bp · −
trnP-GGG · NC_088035.1 · 65,418–65,491 bp · −
rpl20 · NC_088035.1 · 67,322–67,708 bp · −
rps12 · NC_088035.1 · 68,572–68,685 bp · −
rps12 · NC_088035.1 · 94,668–95,464 bp · −
clpP · NC_088035.1 · 68,820–70,772 bp · −
psbN · NC_088035.1 · 73,085–73,216 bp · −
rpoA · NC_088035.1 · 76,611–77,663 bp · −
rps11 · NC_088035.1 · 77,870–78,166 bp · −
rpl36 · NC_088035.1 · 78,253–78,366 bp · −
infA · NC_088035.1 · 78,476–78,709 bp · −
rps8 · NC_088035.1 · 78,831–79,241 bp · −
rpl14 · NC_088035.1 · 79,424–79,792 bp · −
rpl16 · NC_088035.1 · 79,919–81,124 bp · −
rps3 · NC_088035.1 · 81,297–81,947 bp · −
rpl22 · NC_088035.1 · 81,932–82,399 bp · −
rps19 · NC_088035.1 · 82,459–82,608 bp · −
rpl2 · NC_088035.1 · 82,798–84,298 bp · −
rpl23 · NC_088035.1 · 84,317–84,598 bp · −
trnI-CAU · NC_088035.1 · 84,764–84,837 bp · −
trnL-CAA · NC_088035.1 · 91,031–91,111 bp · −
ndhB · NC_088035.1 · 91,661–93,872 bp · −
rps7 · NC_088035.1 · 94,147–94,614 bp · −
trnN-GUU · NC_088035.1 · 105,536–105,607 bp · −
ndhF · NC_088035.1 · 114,177–116,414 bp · −
ndhD · NC_088035.1 · 118,935–120,245 bp · −
psaC · NC_088035.1 · 120,545–120,790 bp · −
ndhE · NC_088035.1 · 121,048–121,350 bp · −
ndhG · NC_088035.1 · 121,524–122,054 bp · −
ndhI · NC_088035.1 · 122,378–122,884 bp · −
ndhA · NC_088035.1 · 122,965–125,071 bp · −
ndhH · NC_088035.1 · 125,073–126,254 bp · −
rps15 · NC_088035.1 · 126,351–126,623 bp · −
ycf1 · NC_088035.1 · 127,031–132,262 bp · −
trnR-ACG · NC_088035.1 · 133,390–133,463 bp · −
rrn5S · NC_088035.1 · 133,708–133,828 bp · −
rrn4.5S · NC_088035.1 · 134,058–134,160 bp · −
rrn23S · NC_088035.1 · 134,261–137,077 bp · −
trnA-UGC · NC_088035.1 · 137,239–138,115 bp · −
trnI-GAU · NC_088035.1 · 138,180–139,200 bp · −
ycf68 · NC_088035.1 · 138,752–139,045 bp · −
rrn16S · NC_088035.1 · 139,499–140,989 bp · −
trnV-GAC · NC_088035.1 · 141,218–141,289 bp · −
ycf15 · NC_088035.1 · 147,668–147,775 bp · −
ycf2 · NC_088035.1 · 147,836–153,247 bp · −
psbK · NC_088035.1 · 7,395–7,580 bp · +
psbI · NC_088035.1 · 7,979–8,089 bp · +
trnG-UCC · NC_088035.1 · 9,018–9,787 bp · +
trnR-UCU · NC_088035.1 · 9,999–10,070 bp · +
trnC-GCA · NC_088035.1 · 28,111–28,181 bp · +
petN · NC_088035.1 · 28,910–28,999 bp · +
trnM-CAU · NC_088035.1 · 31,529–31,600 bp · +
psbD · NC_088035.1 · 32,915–33,976 bp · +
psbC · NC_088035.1 · 34,122–35,345 bp · +
psbZ · NC_088035.1 · 36,017–36,205 bp · +
trnG-UCC · NC_088035.1 · 36,475–36,545 bp · +
trnS-GGA · NC_088035.1 · 45,124–45,210 bp · +
trnL-UAA · NC_088035.1 · 47,265–47,818 bp · +
trnF-GAA · NC_088035.1 · 48,124–48,196 bp · +
trnM-CAU · NC_088035.1 · 51,787–51,859 bp · +
rbcL · NC_088035.1 · 54,715–56,178 bp · +
accD · NC_088035.1 · 56,835–58,196 bp · +
psaI · NC_088035.1 · 58,591–58,701 bp · +
ycf4 · NC_088035.1 · 59,068–59,622 bp · +
cemA · NC_088035.1 · 60,251–60,940 bp · +
petA · NC_088035.1 · 61,140–62,102 bp · +
petL · NC_088035.1 · 64,661–64,756 bp · +
petG · NC_088035.1 · 64,930–65,043 bp · +
psaJ · NC_088035.1 · 65,775–65,909 bp · +
rpl33 · NC_088035.1 · 66,394–66,594 bp · +
rps18 · NC_088035.1 · 66,777–67,082 bp · +
rps12 · NC_088035.1 · 142,922–143,718 bp · +
psbB · NC_088035.1 · 71,221–72,747 bp · +
psbT · NC_088035.1 · 72,917–73,024 bp · +
psbH · NC_088035.1 · 73,299–73,529 bp · +
petB · NC_088035.1 · 73,650–75,051 bp · +
petD · NC_088035.1 · 75,241–76,456 bp · +
ycf2 · NC_088035.1 · 85,139–90,550 bp · +
ycf15 · NC_088035.1 · 90,611–90,718 bp · +
trnV-GAC · NC_088035.1 · 97,097–97,168 bp · +
rrn16S · NC_088035.1 · 97,397–98,887 bp · +
trnI-GAU · NC_088035.1 · 99,186–100,206 bp · +
trnA-UGC · NC_088035.1 · 100,271–101,147 bp · +
rrn23S · NC_088035.1 · 101,309–104,125 bp · +
rrn4.5S · NC_088035.1 · 104,226–104,328 bp · +
rrn5S · NC_088035.1 · 104,558–104,678 bp · +
trnR-ACG · NC_088035.1 · 104,923–104,996 bp · +
ycf1 · NC_088035.1 · 106,124–111,355 bp · +
rps15 · NC_088035.1 · 111,763–112,035 bp · +
ndhH · NC_088035.1 · 112,132–113,313 bp · +
rpl32 · NC_088035.1 · 116,933–117,091 bp · +
trnL-UAG · NC_088035.1 · 117,563–117,642 bp · +
ccsA · NC_088035.1 · 117,738–118,718 bp · +
trnN-GUU · NC_088035.1 · 132,779–132,850 bp · +
rps7 · NC_088035.1 · 143,772–144,239 bp · +
ndhB · NC_088035.1 · 144,514–146,725 bp · +
trnL-CAA · NC_088035.1 · 147,275–147,355 bp · +
trnI-CAU · NC_088035.1 · 153,549–153,622 bp · +
rpl23 · NC_088035.1 · 153,788–154,069 bp · +
rpl2 · NC_088035.1 · 154,088–155,588 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Schnabelia nepetifolia
ANNOTATED PLASTOME
NC_088035.1
155,733 bp · 136 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38933 77866 116800 155733 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnM-CAU psbD psbC psbZ trnG-UCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rps15 ndhH rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-GGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU ycf68 rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
137 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 76 76 Locate
psbA gene − 385 1443 1059 Locate
trnK-UUU gene − 1688 4286 2599 Locate
matK gene − 2017 3552 1536 Locate
rps16 gene − 5228 6446 1219 Locate
trnQ-UUG gene − 6976 7047 72 Locate
psbK gene + 7395 7580 186 Locate
psbI gene + 7979 8089 111 Locate
trnS-GCU gene − 8187 8274 88 Locate
trnG-UCC gene + 9018 9787 770 Locate
trnR-UCU gene + 9999 10070 72 Locate
atpA gene − 10180 11703 1524 Locate
atpF gene − 11794 13037 1244 Locate
atpH gene − 13409 13654 246 Locate
atpI gene − 14620 15363 744 Locate
rps2 gene − 15596 16306 711 Locate
rpoC2 gene − 16573 20718 4146 Locate
rpoC1 gene − 20884 23709 2826 Locate
rpoB gene − 23736 26948 3213 Locate
trnC-GCA gene + 28111 28181 71 Locate
petN gene + 28910 28999 90 Locate
psbM gene − 29956 30060 105 Locate
trnD-GUC gene − 30573 30646 74 Locate
trnY-GUA gene − 30751 30834 84 Locate
trnE-UUC gene − 30894 30966 73 Locate
trnM-CAU gene + 31529 31600 72 Locate
psbD gene + 32915 33976 1062 Locate
psbC gene + 34122 35345 1224 Locate
trnS-UGA gene − 35598 35689 92 Locate
psbZ gene + 36017 36205 189 Locate
trnG-UCC gene + 36475 36545 71 Locate
trnfM-CAU gene − 36715 36788 74 Locate
rps14 gene − 36933 37235 303 Locate
psaB gene − 37350 39554 2205 Locate
psaA gene − 39580 41832 2253 Locate
ycf3 gene − 42581 44528 1948 Locate
trnS-GGA gene + 45124 45210 87 Locate
rps4 gene − 45507 46112 606 Locate
trnT-UGU gene − 46472 46544 73 Locate
trnL-UAA gene + 47265 47818 554 Locate
trnF-GAA gene + 48124 48196 73 Locate
ndhJ gene − 48612 49088 477 Locate
ndhK gene − 49206 49883 678 Locate
ndhC gene − 49937 50299 363 Locate
trnV-UAC gene − 50935 51605 671 Locate
trnM-CAU gene + 51787 51859 73 Locate
atpE gene − 52059 52460 402 Locate
atpB gene − 52457 53953 1497 Locate
rbcL gene + 54715 56178 1464 Locate
accD gene + 56835 58196 1362 Locate
psaI gene + 58591 58701 111 Locate
ycf4 gene + 59068 59622 555 Locate
cemA gene + 60251 60940 690 Locate
petA gene + 61140 62102 963 Locate
psbJ gene − 62964 63086 123 Locate
psbL gene − 63228 63344 117 Locate
psbF gene − 63368 63487 120 Locate
psbE gene − 63502 63753 252 Locate
petL gene + 64661 64756 96 Locate
petG gene + 64930 65043 114 Locate
trnW-CCA gene − 65181 65254 74 Locate
trnP-GGG gene − 65418 65491 74 Locate
psaJ gene + 65775 65909 135 Locate
rpl33 gene + 66394 66594 201 Locate
rps18 gene + 66777 67082 306 Locate
rpl20 gene − 67322 67708 387 Locate
rps12 gene − 68572 68685 114 Locate
clpP gene − 68820 70772 1953 Locate
psbB gene + 71221 72747 1527 Locate
psbT gene + 72917 73024 108 Locate
psbN gene − 73085 73216 132 Locate
psbH gene + 73299 73529 231 Locate
petB gene + 73650 75051 1402 Locate
petD gene + 75241 76456 1216 Locate
rpoA gene − 76611 77663 1053 Locate
rps11 gene − 77870 78166 297 Locate
rpl36 gene − 78253 78366 114 Locate
infA gene − 78476 78709 234 Locate
rps8 gene − 78831 79241 411 Locate
rpl14 gene − 79424 79792 369 Locate
rpl16 gene − 79919 81124 1206 Locate
rps3 gene − 81297 81947 651 Locate
rpl22 gene − 81932 82399 468 Locate
rps19 gene − 82459 82608 150 Locate
rpl2 gene − 82798 84298 1501 Locate
rpl23 gene − 84317 84598 282 Locate
trnI-CAU gene − 84764 84837 74 Locate
ycf2 gene + 85139 90550 5412 Locate
ycf15 gene + 90611 90718 108 Locate
trnL-CAA gene − 91031 91111 81 Locate
ndhB gene − 91661 93872 2212 Locate
rps7 gene − 94147 94614 468 Locate
rps12 gene − 94668 95464 797 Locate
trnV-GAC gene + 97097 97168 72 Locate
rrn16S gene + 97397 98887 1491 Locate
trnI-GAU gene + 99186 100206 1021 Locate
trnA-UGC gene + 100271 101147 877 Locate
rrn23S gene + 101309 104125 2817 Locate
rrn4.5S gene + 104226 104328 103 Locate
rrn5S gene + 104558 104678 121 Locate
trnR-ACG gene + 104923 104996 74 Locate
trnN-GUU gene − 105536 105607 72 Locate
ycf1 gene + 106124 111355 5232 Locate
rps15 gene + 111763 112035 273 Locate
ndhH gene + 112132 113313 1182 Locate
ndhF gene − 114177 116414 2238 Locate
rpl32 gene + 116933 117091 159 Locate
trnL-UAG gene + 117563 117642 80 Locate
ccsA gene + 117738 118718 981 Locate
ndhD gene − 118935 120245 1311 Locate
psaC gene − 120545 120790 246 Locate
ndhE gene − 121048 121350 303 Locate
ndhG gene − 121524 122054 531 Locate
ndhI gene − 122378 122884 507 Locate
ndhA gene − 122965 125071 2107 Locate
ndhH gene − 125073 126254 1182 Locate
rps15 gene − 126351 126623 273 Locate
ycf1 gene − 127031 132262 5232 Locate
trnN-GUU gene + 132779 132850 72 Locate
trnR-ACG gene − 133390 133463 74 Locate
rrn5S gene − 133708 133828 121 Locate
rrn4.5S gene − 134058 134160 103 Locate
rrn23S gene − 134261 137077 2817 Locate
trnA-UGC gene − 137239 138115 877 Locate
trnI-GAU gene − 138180 139200 1021 Locate
ycf68 gene − 138752 139045 294 Locate
rrn16S gene − 139499 140989 1491 Locate
trnV-GAC gene − 141218 141289 72 Locate
rps12 gene + 142922 143718 797 Locate
rps7 gene + 143772 144239 468 Locate
ndhB gene + 144514 146725 2212 Locate
trnL-CAA gene + 147275 147355 81 Locate
ycf15 gene − 147668 147775 108 Locate
ycf2 gene − 147836 153247 5412 Locate
trnI-CAU gene + 153549 153622 74 Locate
rpl23 gene + 153788 154069 282 Locate
rpl2 gene + 154088 155588 1501 Locate
Status Available
Accession NC_088035.1
Length 155,733 bp
GC content 37.8%
Annotated genes 136
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 13 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources