LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 gene sequences

Coordinate-aware organelle record

Schnabelia oligophylla chloroplast dna

Available NC_088036.1 156,944 bp 136 genes
DNA resources Accession record
Schnabelia oligophylla chloroplast Biopython GenomeDiagram 1.79; GenBank local location segments. IR IR IR IR IR IR IR IR IR IR IR IR IR IR IR IR trnH-GUG · NC_088036.1 · 1–75 bp · − psbA · NC_088036.1 · 386–1,444 bp · − trnK-UUU · NC_088036.1 · 1,689–4,280 bp · − matK · NC_088036.1 · 2,010–3,545 bp · − rps16 · NC_088036.1 · 5,235–6,449 bp · − trnQ-UUG · NC_088036.1 · 7,622–7,693 bp · − trnS-GCU · NC_088036.1 · 8,828–8,915 bp · − atpA · NC_088036.1 · 10,812–12,335 bp · − atpF · NC_088036.1 · 12,446–13,693 bp · − atpH · NC_088036.1 · 14,062–14,307 bp · − atpI · NC_088036.1 · 15,263–16,006 bp · − rps2 · NC_088036.1 · 16,230–16,940 bp · − rpoC2 · NC_088036.1 · 17,202–21,350 bp · − rpoC1 · NC_088036.1 · 21,511–24,347 bp · − rpoB · NC_088036.1 · 24,374–27,586 bp · − psbM · NC_088036.1 · 30,466–30,570 bp · − trnD-GUC · NC_088036.1 · 31,090–31,163 bp · − trnY-GUA · NC_088036.1 · 31,273–31,356 bp · − trnE-UUC · NC_088036.1 · 31,416–31,488 bp · − trnS-UGA · NC_088036.1 · 36,024–36,115 bp · − trnfM-CAU · NC_088036.1 · 37,141–37,214 bp · − rps14 · NC_088036.1 · 37,359–37,661 bp · − psaB · NC_088036.1 · 37,768–39,972 bp · − psaA · NC_088036.1 · 39,998–42,250 bp · − ycf3 · NC_088036.1 · 42,974–44,918 bp · − rps4 · NC_088036.1 · 45,916–46,521 bp · − trnT-UGU · NC_088036.1 · 46,881–46,953 bp · − ndhJ · NC_088036.1 · 49,285–49,761 bp · − ndhK · NC_088036.1 · 49,876–50,553 bp · − ndhC · NC_088036.1 · 50,607–50,969 bp · − trnV-UAC · NC_088036.1 · 51,598–52,270 bp · − atpE · NC_088036.1 · 52,723–53,124 bp · − atpB · NC_088036.1 · 53,121–54,617 bp · − psbJ · NC_088036.1 · 63,808–63,930 bp · − psbL · NC_088036.1 · 64,072–64,188 bp · − psbF · NC_088036.1 · 64,212–64,331 bp · − psbE · NC_088036.1 · 64,346–64,597 bp · − trnW-CCA · NC_088036.1 · 66,030–66,103 bp · − trnP-GGG · NC_088036.1 · 66,263–66,333 bp · − rpl20 · NC_088036.1 · 68,202–68,588 bp · − rps12 · NC_088036.1 · 69,435–69,548 bp · − rps12 · NC_088036.1 · 95,590–96,386 bp · − clpP · NC_088036.1 · 69,680–71,643 bp · − psbN · NC_088036.1 · 73,976–74,107 bp · − rpoA · NC_088036.1 · 77,489–78,541 bp · − rps11 · NC_088036.1 · 78,747–79,067 bp · − rpl36 · NC_088036.1 · 79,154–79,267 bp · − infA · NC_088036.1 · 79,371–79,604 bp · − rps8 · NC_088036.1 · 79,726–80,136 bp · − rpl14 · NC_088036.1 · 80,319–80,687 bp · − rpl16 · NC_088036.1 · 80,814–82,030 bp · − rps3 · NC_088036.1 · 82,198–82,848 bp · − rpl22 · NC_088036.1 · 82,833–83,306 bp · − rps19 · NC_088036.1 · 83,366–83,515 bp · − rpl2 · NC_088036.1 · 83,704–85,205 bp · − rpl23 · NC_088036.1 · 85,224–85,505 bp · − trnI-CAU · NC_088036.1 · 85,671–85,744 bp · − trnL-CAA · NC_088036.1 · 91,946–92,026 bp · − ndhB · NC_088036.1 · 92,589–94,800 bp · − rps7 · NC_088036.1 · 95,069–95,536 bp · − trnN-GUU · NC_088036.1 · 106,512–106,584 bp · − ndhF · NC_088036.1 · 115,239–117,476 bp · − ndhD · NC_088036.1 · 119,990–121,300 bp · − psaC · NC_088036.1 · 121,602–121,847 bp · − ndhE · NC_088036.1 · 122,105–122,410 bp · − ndhG · NC_088036.1 · 122,581–123,111 bp · − ndhI · NC_088036.1 · 123,437–123,943 bp · − ndhA · NC_088036.1 · 124,024–126,145 bp · − ndhH · NC_088036.1 · 126,147–127,328 bp · − rps15 · NC_088036.1 · 127,425–127,697 bp · − ycf1 · NC_088036.1 · 128,104–133,335 bp · − trnR-ACG · NC_088036.1 · 134,554–134,627 bp · − rrn5S · NC_088036.1 · 134,863–134,983 bp · − rrn4.5S · NC_088036.1 · 135,244–135,346 bp · − rrn23S · NC_088036.1 · 135,447–138,263 bp · − trnA-UGC · NC_088036.1 · 138,425–139,308 bp · − trnI-GAU · NC_088036.1 · 139,373–140,392 bp · − ycf68 · NC_088036.1 · 139,944–140,237 bp · − rrn16S · NC_088036.1 · 140,691–142,181 bp · − trnV-GAC · NC_088036.1 · 142,411–142,482 bp · − ycf15 · NC_088036.1 · 148,836–148,982 bp · − ycf2 · NC_088036.1 · 149,047–154,461 bp · − psbK · NC_088036.1 · 8,032–8,232 bp · + psbI · NC_088036.1 · 8,624–8,734 bp · + trnG-UCC · NC_088036.1 · 9,611–10,403 bp · + trnR-UCU · NC_088036.1 · 10,613–10,684 bp · + trnC-GCA · NC_088036.1 · 28,779–28,849 bp · + petN · NC_088036.1 · 29,579–29,668 bp · + trnM-CAU · NC_088036.1 · 32,043–32,114 bp · + psbD · NC_088036.1 · 33,334–34,395 bp · + psbC · NC_088036.1 · 34,541–35,764 bp · + psbZ · NC_088036.1 · 36,436–36,624 bp · + trnG-UCC · NC_088036.1 · 36,893–36,963 bp · + trnS-GGA · NC_088036.1 · 45,508–45,594 bp · + trnL-UAA · NC_088036.1 · 47,670–48,222 bp · + trnF-GAA · NC_088036.1 · 48,535–48,607 bp · + trnM-CAU · NC_088036.1 · 52,451–52,523 bp · + rbcL · NC_088036.1 · 55,408–56,871 bp · + accD · NC_088036.1 · 57,548–58,885 bp · + psaI · NC_088036.1 · 59,288–59,398 bp · + ycf4 · NC_088036.1 · 59,811–60,365 bp · + cemA · NC_088036.1 · 60,995–61,684 bp · + petA · NC_088036.1 · 61,883–62,845 bp · + petL · NC_088036.1 · 65,512–65,607 bp · + petG · NC_088036.1 · 65,781–65,894 bp · + psaJ · NC_088036.1 · 66,628–66,762 bp · + rpl33 · NC_088036.1 · 67,275–67,475 bp · + rps18 · NC_088036.1 · 67,659–67,970 bp · + rps12 · NC_088036.1 · 144,126–144,922 bp · + psbB · NC_088036.1 · 72,099–73,625 bp · + psbT · NC_088036.1 · 73,801–73,908 bp · + psbH · NC_088036.1 · 74,213–74,425 bp · + petB · NC_088036.1 · 74,546–75,915 bp · + petD · NC_088036.1 · 76,118–77,344 bp · + ycf2 · NC_088036.1 · 86,051–91,465 bp · + ycf15 · NC_088036.1 · 91,530–91,676 bp · + trnV-GAC · NC_088036.1 · 98,030–98,101 bp · + rrn16S · NC_088036.1 · 98,331–99,821 bp · + trnI-GAU · NC_088036.1 · 100,120–101,139 bp · + trnA-UGC · NC_088036.1 · 101,204–102,087 bp · + rrn23S · NC_088036.1 · 102,249–105,065 bp · + rrn4.5S · NC_088036.1 · 105,166–105,268 bp · + rrn5S · NC_088036.1 · 105,529–105,649 bp · + trnR-ACG · NC_088036.1 · 105,885–105,958 bp · + ycf1 · NC_088036.1 · 107,177–112,408 bp · + rps15 · NC_088036.1 · 112,815–113,087 bp · + ndhH · NC_088036.1 · 113,184–114,365 bp · + rpl32 · NC_088036.1 · 117,995–118,153 bp · + trnL-UAG · NC_088036.1 · 118,617–118,696 bp · + ccsA · NC_088036.1 · 118,780–119,760 bp · + trnN-GUU · NC_088036.1 · 133,928–133,999 bp · + rps7 · NC_088036.1 · 144,976–145,443 bp · + ndhB · NC_088036.1 · 145,712–147,923 bp · + trnL-CAA · NC_088036.1 · 148,486–148,566 bp · + trnI-CAU · NC_088036.1 · 154,768–154,841 bp · + rpl23 · NC_088036.1 · 155,007–155,288 bp · + rpl2 · NC_088036.1 · 155,307–156,808 bp · + 0 kb 13 kb 26 kb 39 kb 52 kb 65 kb 78 kb 91 kb 104 kb 117 kb 130 kb 143 kb Schnabelia oligophylla ANNOTATED PLASTOME NC_088036.1 156,944 bp · 136 genes Gene function Transfer RNA Photosystem II Other Ribosomal protein ATP synthase RNA polymerase Cytochrome Photosystem I NADH dehydrogenase Ribosomal RNA

Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram.

Gene-position browser

Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.

137 local segments
GeneTypeGroupStrandStartEndLength
trnH-GUGgenetranslation-rna−17575
psbAgenephotosystem-ii−38614441059
trnK-UUUgenetranslation-rna−168942802592
matKgeneother−201035451536
rps16generibosomal-protein−523564491215
trnQ-UUGgenetranslation-rna−7622769372
psbKgenephotosystem-ii+80328232201
psbIgenephotosystem-ii+86248734111
trnS-GCUgenetranslation-rna−8828891588
trnG-UCCgenetranslation-rna+961110403793
trnR-UCUgenetranslation-rna+106131068472
atpAgeneatp-synthase−10812123351524
atpFgeneatp-synthase−12446136931248
atpHgeneatp-synthase−1406214307246
atpIgeneatp-synthase−1526316006744
rps2generibosomal-protein−1623016940711
rpoC2generna-polymerase−17202213504149
rpoC1generna-polymerase−21511243472837
rpoBgenerna-polymerase−24374275863213
trnC-GCAgenetranslation-rna+287792884971
petNgenecytochrome+295792966890
psbMgenephotosystem-ii−3046630570105
trnD-GUCgenetranslation-rna−310903116374
trnY-GUAgenetranslation-rna−312733135684
trnE-UUCgenetranslation-rna−314163148873
trnM-CAUgenetranslation-rna+320433211472
psbDgenephotosystem-ii+33334343951062
psbCgenephotosystem-ii+34541357641224
trnS-UGAgenetranslation-rna−360243611592
psbZgenephotosystem-ii+3643636624189
trnG-UCCgenetranslation-rna+368933696371
trnfM-CAUgenetranslation-rna−371413721474
rps14generibosomal-protein−3735937661303
psaBgenephotosystem-i−37768399722205
psaAgenephotosystem-i−39998422502253
ycf3geneother−42974449181945
trnS-GGAgenetranslation-rna+455084559487
rps4generibosomal-protein−4591646521606
trnT-UGUgenetranslation-rna−468814695373
trnL-UAAgenetranslation-rna+4767048222553
trnF-GAAgenetranslation-rna+485354860773
ndhJgenenad-dehydrogenase−4928549761477
ndhKgenenad-dehydrogenase−4987650553678
ndhCgenenad-dehydrogenase−5060750969363
trnV-UACgenetranslation-rna−5159852270673
trnM-CAUgenetranslation-rna+524515252373
atpEgeneatp-synthase−5272353124402
atpBgeneatp-synthase−53121546171497
rbcLgeneother+55408568711464
accDgeneother+57548588851338
psaIgenephotosystem-i+5928859398111
ycf4geneother+5981160365555
cemAgeneother+6099561684690
petAgenecytochrome+6188362845963
psbJgenephotosystem-ii−6380863930123
psbLgenephotosystem-ii−6407264188117
psbFgenephotosystem-ii−6421264331120
psbEgenephotosystem-ii−6434664597252
petLgenecytochrome+655126560796
petGgenecytochrome+6578165894114
trnW-CCAgenetranslation-rna−660306610374
trnP-GGGgenetranslation-rna−662636633371
psaJgenephotosystem-i+6662866762135
rpl33generibosomal-protein+6727567475201
rps18generibosomal-protein+6765967970312
rpl20generibosomal-protein−6820268588387
rps12generibosomal-protein−6943569548114
clpPgeneother−69680716431964
psbBgenephotosystem-ii+72099736251527
psbTgenephotosystem-ii+7380173908108
psbNgenephotosystem-ii−7397674107132
psbHgenephotosystem-ii+7421374425213
petBgenecytochrome+74546759151370
petDgenecytochrome+76118773441227
rpoAgenerna-polymerase−77489785411053
rps11generibosomal-protein−7874779067321
rpl36generibosomal-protein−7915479267114
infAgeneother−7937179604234
rps8generibosomal-protein−7972680136411
rpl14generibosomal-protein−8031980687369
rpl16generibosomal-protein−80814820301217
rps3generibosomal-protein−8219882848651
rpl22generibosomal-protein−8283383306474
rps19generibosomal-protein−8336683515150
rpl2generibosomal-protein−83704852051502
rpl23generibosomal-protein−8522485505282
trnI-CAUgenetranslation-rna−856718574474
ycf2geneother+86051914655415
ycf15geneother+9153091676147
trnL-CAAgenetranslation-rna−919469202681
ndhBgenenad-dehydrogenase−92589948002212
rps7generibosomal-protein−9506995536468
rps12generibosomal-protein−9559096386797
trnV-GACgenetranslation-rna+980309810172
rrn16Sgeneribosomal-rna+98331998211491
trnI-GAUgenetranslation-rna+1001201011391020
trnA-UGCgenetranslation-rna+101204102087884
rrn23Sgeneribosomal-rna+1022491050652817
rrn4.5Sgeneribosomal-rna+105166105268103
rrn5Sgeneribosomal-rna+105529105649121
trnR-ACGgenetranslation-rna+10588510595874
trnN-GUUgenetranslation-rna−10651210658473
ycf1geneother+1071771124085232
rps15generibosomal-protein+112815113087273
ndhHgenenad-dehydrogenase+1131841143651182
ndhFgenenad-dehydrogenase−1152391174762238
rpl32generibosomal-protein+117995118153159
trnL-UAGgenetranslation-rna+11861711869680
ccsAgeneother+118780119760981
ndhDgenenad-dehydrogenase−1199901213001311
psaCgenephotosystem-i−121602121847246
ndhEgenenad-dehydrogenase−122105122410306
ndhGgenenad-dehydrogenase−122581123111531
ndhIgenenad-dehydrogenase−123437123943507
ndhAgenenad-dehydrogenase−1240241261452122
ndhHgenenad-dehydrogenase−1261471273281182
rps15generibosomal-protein−127425127697273
ycf1geneother−1281041333355232
trnN-GUUgenetranslation-rna+13392813399972
trnR-ACGgenetranslation-rna−13455413462774
rrn5Sgeneribosomal-rna−134863134983121
rrn4.5Sgeneribosomal-rna−135244135346103
rrn23Sgeneribosomal-rna−1354471382632817
trnA-UGCgenetranslation-rna−138425139308884
trnI-GAUgenetranslation-rna−1393731403921020
ycf68geneother−139944140237294
rrn16Sgeneribosomal-rna−1406911421811491
trnV-GACgenetranslation-rna−14241114248272
rps12generibosomal-protein+144126144922797
rps7generibosomal-protein+144976145443468
ndhBgenenad-dehydrogenase+1457121479232212
trnL-CAAgenetranslation-rna+14848614856681
ycf15geneother−148836148982147
ycf2geneother−1490471544615415
trnI-CAUgenetranslation-rna+15476815484174
rpl23generibosomal-protein+155007155288282
rpl2generibosomal-protein+1553071568081502

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources
Chloroplast DNANC_088036.1DNA · accDNC_088036DNA · atpBNC_088036DNA · matKNC_088036DNA · ndhFNC_088036DNA · psbANC_088036DNA · rbcLNC_088036DNA · rps12NC_088036DNA · ycf1NC_088036