Scutellaria angustifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420978.1 · 3–76 bp · −
psbA · MW420978.1 · 370–1,428 bp · −
trnK-UUU · MW420978.1 · 1,665–4,253 bp · −
matK · MW420978.1 · 1,956–3,302 bp · −
rps16 · MW420978.1 · 5,158–6,326 bp · −
trnQ-UUC · MW420978.1 · 7,437–7,508 bp · −
trnS-GCU · MW420978.1 · 8,636–8,723 bp · −
atpA · MW420978.1 · 10,504–12,027 bp · −
atpF · MW420978.1 · 12,101–13,327 bp · −
atpH · MW420978.1 · 13,694–13,939 bp · −
atpI · MW420978.1 · 14,936–15,679 bp · −
rps2 · MW420978.1 · 16,029–16,739 bp · −
rpoC2 · MW420978.1 · 16,956–21,161 bp · −
rpoC1 · MW420978.1 · 21,316–24,145 bp · −
rpoB · MW420978.1 · 24,172–27,384 bp · −
psbM · MW420978.1 · 30,415–30,519 bp · −
trnD-GUC · MW420978.1 · 31,045–31,118 bp · −
trnY-GUA · MW420978.1 · 31,232–31,315 bp · −
trnE-UUC · MW420978.1 · 31,375–31,447 bp · −
trnS-UCA · MW420978.1 · 36,085–36,177 bp · −
trnfM-CAU · MW420978.1 · 37,182–37,255 bp · −
rps14 · MW420978.1 · 37,405–37,707 bp · −
psaB · MW420978.1 · 37,833–40,037 bp · −
psaA · MW420978.1 · 40,063–42,315 bp · −
ycf3 · MW420978.1 · 42,989–44,911 bp · −
rps4 · MW420978.1 · 46,169–46,774 bp · −
trnT-UGU · MW420978.1 · 47,116–47,188 bp · −
ndhJ · MW420978.1 · 49,459–49,935 bp · −
ndhK · MW420978.1 · 50,044–50,721 bp · −
ndhC · MW420978.1 · 50,774–51,136 bp · −
trnV-UAC · MW420978.1 · 52,157–52,809 bp · −
atpE · MW420978.1 · 53,272–53,673 bp · −
atpB · MW420978.1 · 53,670–55,157 bp · −
psbJ · MW420978.1 · 64,912–65,034 bp · −
psbL · MW420978.1 · 65,168–65,284 bp · −
psbF · MW420978.1 · 65,308–65,427 bp · −
psbE · MW420978.1 · 65,442–65,693 bp · −
trnW-CCA · MW420978.1 · 67,104–67,177 bp · −
trnP-UGG · MW420978.1 · 67,347–67,420 bp · −
rpl20 · MW420978.1 · 69,217–69,603 bp · −
rps12 · MW420978.1 · 70,387–70,512 bp · −
rps12 · MW420978.1 · 97,758–98,548 bp · −
clpP · MW420978.1 · 70,655–72,591 bp · −
psbN · MW420978.1 · 74,970–75,101 bp · −
rpoA · MW420978.1 · 78,471–79,484 bp · −
rps11 · MW420978.1 · 79,556–79,972 bp · −
rpl36 · MW420978.1 · 80,074–80,187 bp · −
infA · MW420978.1 · 80,283–80,516 bp · −
rps8 · MW420978.1 · 80,636–81,046 bp · −
rpl14 · MW420978.1 · 81,215–81,583 bp · −
rpl16 · MW420978.1 · 81,710–82,953 bp · −
rps3 · MW420978.1 · 83,108–83,770 bp · −
rpl22 · MW420978.1 · 83,772–84,227 bp · −
rps19 · MW420978.1 · 84,287–84,436 bp · −
rpl2 · MW420978.1 · 84,620–86,102 bp · −
rpl23 · MW420978.1 · 86,121–86,402 bp · −
trnI-CAU · MW420978.1 · 86,562–86,635 bp · −
trnL-CAA · MW420978.1 · 94,128–94,208 bp · −
ndhB · MW420978.1 · 94,751–96,962 bp · −
rps7 · MW420978.1 · 97,237–97,704 bp · −
ndhF · MW420978.1 · 109,738–111,978 bp · −
ndhD · MW420978.1 · 114,487–115,797 bp · −
psaC · MW420978.1 · 116,109–116,354 bp · −
ndhE · MW420978.1 · 116,611–116,916 bp · −
ndhG · MW420978.1 · 117,137–117,667 bp · −
ndhI · MW420978.1 · 118,021–118,533 bp · −
ndhA · MW420978.1 · 118,614–120,706 bp · −
ndhH · MW420978.1 · 120,708–121,889 bp · −
rps15 · MW420978.1 · 121,992–122,264 bp · −
ycf1 · MW420978.1 · 122,530–128,073 bp · −
trnR-ACC · MW420978.1 · 129,022–129,095 bp · −
rrn5 · MW420978.1 · 129,330–129,450 bp · −
rrn4.5 · MW420978.1 · 129,698–129,800 bp · −
rrn23 · MW420978.1 · 129,899–132,711 bp · −
trnA-UGC · MW420978.1 · 132,881–133,765 bp · −
trnI-GAU · MW420978.1 · 133,831–134,850 bp · −
rrn16 · MW420978.1 · 135,149–136,639 bp · −
trnV-GAC · MW420978.1 · 136,867–136,938 bp · −
ycf15 · MW420978.1 · 143,192–143,389 bp · −
ycf2 · MW420978.1 · 143,531–150,340 bp · −
psbK · MW420978.1 · 7,833–8,018 bp · +
psbI · MW420978.1 · 8,409–8,519 bp · +
trnG-UCC · MW420978.1 · 9,400–10,161 bp · +
trnR-UCU · MW420978.1 · 10,336–10,407 bp · +
trnC-GCA · MW420978.1 · 28,539–28,609 bp · +
petN · MW420978.1 · 29,323–29,412 bp · +
trnT-GGU · MW420978.1 · 32,030–32,101 bp · +
psbD · MW420978.1 · 33,412–34,473 bp · +
psbC · MW420978.1 · 34,421–35,842 bp · +
psbZ · MW420978.1 · 36,498–36,686 bp · +
trnG-GCC · MW420978.1 · 36,958–37,028 bp · +
trnS-GGA · MW420978.1 · 45,797–45,883 bp · +
trnL-UAA · MW420978.1 · 47,864–48,433 bp · +
trnF-GAA · MW420978.1 · 48,738–48,810 bp · +
trnM-CAU · MW420978.1 · 52,990–53,062 bp · +
rbcL · MW420978.1 · 55,931–57,373 bp · +
accD · MW420978.1 · 58,103–59,569 bp · +
psaI · MW420978.1 · 60,286–60,396 bp · +
ycf4 · MW420978.1 · 60,822–61,376 bp · +
cemA · MW420978.1 · 62,062–62,721 bp · +
petA · MW420978.1 · 62,928–63,890 bp · +
petL · MW420978.1 · 66,601–66,696 bp · +
petG · MW420978.1 · 66,872–66,985 bp · +
psaJ · MW420978.1 · 67,693–67,827 bp · +
rpl33 · MW420978.1 · 68,299–68,499 bp · +
rps18 · MW420978.1 · 68,674–68,979 bp · +
rps12 · MW420978.1 · 138,516–139,306 bp · +
psbB · MW420978.1 · 73,065–74,591 bp · +
psbT · MW420978.1 · 74,795–74,896 bp · +
psbH · MW420978.1 · 75,205–75,426 bp · +
petB · MW420978.1 · 75,551–76,918 bp · +
petD · MW420978.1 · 77,107–78,308 bp · +
ycf2 · MW420978.1 · 86,724–93,533 bp · +
ycf15 · MW420978.1 · 93,675–93,872 bp · +
trnV-GAC · MW420978.1 · 100,126–100,197 bp · +
rrn16 · MW420978.1 · 100,425–101,915 bp · +
trnI-GAU · MW420978.1 · 102,214–103,233 bp · +
trnA-UGC · MW420978.1 · 103,299–104,183 bp · +
rrn23 · MW420978.1 · 104,353–107,165 bp · +
rrn4.5 · MW420978.1 · 107,264–107,366 bp · +
rrn5 · MW420978.1 · 107,614–107,734 bp · +
trnR-ACC · MW420978.1 · 107,969–108,042 bp · +
trnN-GUU · MW420978.1 · 108,590–108,661 bp · +
rpl32 · MW420978.1 · 112,502–112,678 bp · +
trnL-UAG · MW420978.1 · 113,104–113,183 bp · +
ccsA · MW420978.1 · 113,280–114,254 bp · +
trnN-GUU · MW420978.1 · 128,403–128,474 bp · +
rps7 · MW420978.1 · 139,360–139,827 bp · +
ndhB · MW420978.1 · 140,102–142,313 bp · +
trnL-CAA · MW420978.1 · 142,856–142,936 bp · +
trnI-CAU · MW420978.1 · 150,429–150,502 bp · +
rpl23 · MW420978.1 · 150,662–150,943 bp · +
rpl2 · MW420978.1 · 150,962–152,444 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria angustifolia
ANNOTATED PLASTOME
MW420978.1
152,539 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38135 76270 114404 152539 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1956 3302 1347 Locate
rps16 gene − 5158 6326 1169 Locate
trnQ-UUC gene − 7437 7508 72 Locate
psbK gene + 7833 8018 186 Locate
psbI gene + 8409 8519 111 Locate
trnS-GCU gene − 8636 8723 88 Locate
trnG-UCC gene + 9400 10161 762 Locate
trnR-UCU gene + 10336 10407 72 Locate
atpA gene − 10504 12027 1524 Locate
atpF gene − 12101 13327 1227 Locate
atpH gene − 13694 13939 246 Locate
atpI gene − 14936 15679 744 Locate
rps2 gene − 16029 16739 711 Locate
rpoC2 gene − 16956 21161 4206 Locate
rpoC1 gene − 21316 24145 2830 Locate
rpoB gene − 24172 27384 3213 Locate
trnC-GCA gene + 28539 28609 71 Locate
petN gene + 29323 29412 90 Locate
psbM gene − 30415 30519 105 Locate
trnD-GUC gene − 31045 31118 74 Locate
trnY-GUA gene − 31232 31315 84 Locate
trnE-UUC gene − 31375 31447 73 Locate
trnT-GGU gene + 32030 32101 72 Locate
psbD gene + 33412 34473 1062 Locate
psbC gene + 34421 35842 1422 Locate
trnS-UCA gene − 36085 36177 93 Locate
psbZ gene + 36498 36686 189 Locate
trnG-GCC gene + 36958 37028 71 Locate
trnfM-CAU gene − 37182 37255 74 Locate
rps14 gene − 37405 37707 303 Locate
psaB gene − 37833 40037 2205 Locate
psaA gene − 40063 42315 2253 Locate
ycf3 gene − 42989 44911 1923 Locate
trnS-GGA gene + 45797 45883 87 Locate
rps4 gene − 46169 46774 606 Locate
trnT-UGU gene − 47116 47188 73 Locate
trnL-UAA gene + 47864 48433 570 Locate
trnF-GAA gene + 48738 48810 73 Locate
ndhJ gene − 49459 49935 477 Locate
ndhK gene − 50044 50721 678 Locate
ndhC gene − 50774 51136 363 Locate
trnV-UAC gene − 52157 52809 653 Locate
trnM-CAU gene + 52990 53062 73 Locate
atpE gene − 53272 53673 402 Locate
atpB gene − 53670 55157 1488 Locate
rbcL gene + 55931 57373 1443 Locate
accD gene + 58103 59569 1467 Locate
psaI gene + 60286 60396 111 Locate
ycf4 gene + 60822 61376 555 Locate
cemA gene + 62062 62721 660 Locate
petA gene + 62928 63890 963 Locate
psbJ gene − 64912 65034 123 Locate
psbL gene − 65168 65284 117 Locate
psbF gene − 65308 65427 120 Locate
psbE gene − 65442 65693 252 Locate
petL gene + 66601 66696 96 Locate
petG gene + 66872 66985 114 Locate
trnW-CCA gene − 67104 67177 74 Locate
trnP-UGG gene − 67347 67420 74 Locate
psaJ gene + 67693 67827 135 Locate
rpl33 gene + 68299 68499 201 Locate
rps18 gene + 68674 68979 306 Locate
rpl20 gene − 69217 69603 387 Locate
rps12 gene − 70387 70512 126 Locate
clpP gene − 70655 72591 1937 Locate
psbB gene + 73065 74591 1527 Locate
psbT gene + 74795 74896 102 Locate
psbN gene − 74970 75101 132 Locate
psbH gene + 75205 75426 222 Locate
petB gene + 75551 76918 1368 Locate
petD gene + 77107 78308 1202 Locate
rpoA gene − 78471 79484 1014 Locate
rps11 gene − 79556 79972 417 Locate
rpl36 gene − 80074 80187 114 Locate
infA gene − 80283 80516 234 Locate
rps8 gene − 80636 81046 411 Locate
rpl14 gene − 81215 81583 369 Locate
rpl16 gene − 81710 82953 1244 Locate
rps3 gene − 83108 83770 663 Locate
rpl22 gene − 83772 84227 456 Locate
rps19 gene − 84287 84436 150 Locate
rpl2 gene − 84620 86102 1483 Locate
rpl23 gene − 86121 86402 282 Locate
trnI-CAU gene − 86562 86635 74 Locate
ycf2 gene + 86724 93533 6810 Locate
ycf15 gene + 93675 93872 198 Locate
trnL-CAA gene − 94128 94208 81 Locate
ndhB gene − 94751 96962 2212 Locate
rps7 gene − 97237 97704 468 Locate
rps12 gene − 97758 98548 791 Locate
trnV-GAC gene + 100126 100197 72 Locate
rrn16 gene + 100425 101915 1491 Locate
trnI-GAU gene + 102214 103233 1020 Locate
trnA-UGC gene + 103299 104183 885 Locate
rrn23 gene + 104353 107165 2813 Locate
rrn4.5 gene + 107264 107366 103 Locate
rrn5 gene + 107614 107734 121 Locate
trnR-ACC gene + 107969 108042 74 Locate
trnN-GUU gene + 108590 108661 72 Locate
ndhF gene − 109738 111978 2241 Locate
rpl32 gene + 112502 112678 177 Locate
trnL-UAG gene + 113104 113183 80 Locate
ccsA gene + 113280 114254 975 Locate
ndhD gene − 114487 115797 1311 Locate
psaC gene − 116109 116354 246 Locate
ndhE gene − 116611 116916 306 Locate
ndhG gene − 117137 117667 531 Locate
ndhI gene − 118021 118533 513 Locate
ndhA gene − 118614 120706 2093 Locate
ndhH gene − 120708 121889 1182 Locate
rps15 gene − 121992 122264 273 Locate
ycf1 gene − 122530 128073 5544 Locate
trnN-GUU gene + 128403 128474 72 Locate
trnR-ACC gene − 129022 129095 74 Locate
rrn5 gene − 129330 129450 121 Locate
rrn4.5 gene − 129698 129800 103 Locate
rrn23 gene − 129899 132711 2813 Locate
trnA-UGC gene − 132881 133765 885 Locate
trnI-GAU gene − 133831 134850 1020 Locate
rrn16 gene − 135149 136639 1491 Locate
trnV-GAC gene − 136867 136938 72 Locate
rps12 gene + 138516 139306 791 Locate
rps7 gene + 139360 139827 468 Locate
ndhB gene + 140102 142313 2212 Locate
trnL-CAA gene + 142856 142936 81 Locate
ycf15 gene − 143192 143389 198 Locate
ycf2 gene − 143531 150340 6810 Locate
trnI-CAU gene + 150429 150502 74 Locate
rpl23 gene + 150662 150943 282 Locate
rpl2 gene + 150962 152444 1483 Locate
Status Available
Accession MW420978.1
Length 152,539 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources