Scutellaria caryopteroides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_072112.1 · 3–76 bp · −
psbA · NC_072112.1 · 375–1,433 bp · −
trnK-UUU · NC_072112.1 · 1,675–4,262 bp · −
matK · NC_072112.1 · 1,954–3,315 bp · −
rps16 · NC_072112.1 · 5,135–6,298 bp · −
trnQ-UUG · NC_072112.1 · 7,312–7,383 bp · −
trnS-GCU · NC_072112.1 · 8,514–8,601 bp · −
atpA · NC_072112.1 · 10,392–11,915 bp · −
atpF · NC_072112.1 · 11,998–13,225 bp · −
atpH · NC_072112.1 · 13,581–13,826 bp · −
atpI · NC_072112.1 · 14,822–15,565 bp · −
rps2 · NC_072112.1 · 15,914–16,624 bp · −
rpoC2 · NC_072112.1 · 16,841–21,046 bp · −
rpoC1 · NC_072112.1 · 21,201–24,034 bp · −
rpoB · NC_072112.1 · 24,061–27,273 bp · −
psbM · NC_072112.1 · 30,349–30,453 bp · −
trnD-GUC · NC_072112.1 · 30,980–31,053 bp · −
trnY-GUA · NC_072112.1 · 31,167–31,250 bp · −
trnS-UGA · NC_072112.1 · 36,002–36,093 bp · −
trnfM-CAU · NC_072112.1 · 37,096–37,169 bp · −
rps14 · NC_072112.1 · 37,319–37,621 bp · −
psaB · NC_072112.1 · 37,749–39,953 bp · −
psaA · NC_072112.1 · 39,979–42,231 bp · −
ycf3 · NC_072112.1 · 42,901–44,823 bp · −
rps4 · NC_072112.1 · 46,079–46,684 bp · −
trnT-UGU · NC_072112.1 · 47,025–47,097 bp · −
ndhJ · NC_072112.1 · 49,371–49,847 bp · −
ndhK · NC_072112.1 · 49,955–50,632 bp · −
ndhC · NC_072112.1 · 50,686–51,048 bp · −
trnV-UAC · NC_072112.1 · 51,904–52,556 bp · −
atpE · NC_072112.1 · 53,025–53,426 bp · −
atpB · NC_072112.1 · 53,423–54,910 bp · −
psbJ · NC_072112.1 · 64,543–64,665 bp · −
psbL · NC_072112.1 · 64,799–64,915 bp · −
psbF · NC_072112.1 · 64,939–65,058 bp · −
psbE · NC_072112.1 · 65,073–65,324 bp · −
trnW-CCA · NC_072112.1 · 66,735–66,808 bp · −
trnP-UGG · NC_072112.1 · 66,978–67,051 bp · −
rpl20 · NC_072112.1 · 68,850–69,236 bp · −
rps12 · NC_072112.1 · 70,022–70,147 bp · −
rps12 · NC_072112.1 · 97,325–98,115 bp · −
clpP · NC_072112.1 · 70,290–72,222 bp · −
psbN · NC_072112.1 · 74,560–74,691 bp · −
rpoA · NC_072112.1 · 78,061–79,074 bp · −
rps11 · NC_072112.1 · 79,146–79,562 bp · −
rpl36 · NC_072112.1 · 79,664–79,777 bp · −
infA · NC_072112.1 · 79,873–80,106 bp · −
rps8 · NC_072112.1 · 80,226–80,636 bp · −
rpl14 · NC_072112.1 · 80,810–81,178 bp · −
rpl16 · NC_072112.1 · 81,305–82,531 bp · −
rps3 · NC_072112.1 · 82,686–83,348 bp · −
rpl22 · NC_072112.1 · 83,350–83,805 bp · −
rps19 · NC_072112.1 · 83,865–84,143 bp · −
rpl2 · NC_072112.1 · 84,198–85,680 bp · −
rpl23 · NC_072112.1 · 85,699–85,980 bp · −
trnI-CAU · NC_072112.1 · 86,140–86,213 bp · −
trnL-CAA · NC_072112.1 · 93,706–93,786 bp · −
ndhB · NC_072112.1 · 94,329–96,540 bp · −
rps7 · NC_072112.1 · 96,804–97,271 bp · −
trnN-GUU · NC_072112.1 · 108,152–108,223 bp · −
ndhF · NC_072112.1 · 109,300–111,540 bp · −
psaC · NC_072112.1 · 115,687–115,932 bp · −
ndhE · NC_072112.1 · 116,189–116,494 bp · −
ndhG · NC_072112.1 · 116,715–117,245 bp · −
ndhI · NC_072112.1 · 117,611–118,111 bp · −
ndhA · NC_072112.1 · 118,192–120,273 bp · −
ndhH · NC_072112.1 · 120,275–121,456 bp · −
rps15 · NC_072112.1 · 121,559–121,831 bp · −
ycf1 · NC_072112.1 · 122,098–127,623 bp · −
trnR-ACG · NC_072112.1 · 128,571–128,644 bp · −
rrn5S · NC_072112.1 · 128,879–128,999 bp · −
rrn4.5S · NC_072112.1 · 129,247–129,349 bp · −
rrn23S · NC_072112.1 · 129,448–132,260 bp · −
trnA-UGC · NC_072112.1 · 132,430–133,310 bp · −
trnI-GAU · NC_072112.1 · 133,375–134,395 bp · −
rrn16S · NC_072112.1 · 134,694–136,184 bp · −
trnV-GAC · NC_072112.1 · 136,412–136,483 bp · −
ycf15 · NC_072112.1 · 142,726–142,923 bp · −
ycf2 · NC_072112.1 · 143,065–149,874 bp · −
psbK · NC_072112.1 · 7,708–7,893 bp · +
psbI · NC_072112.1 · 8,285–8,395 bp · +
trnG-UCC · NC_072112.1 · 9,292–10,052 bp · +
trnR-UCU · NC_072112.1 · 10,223–10,294 bp · +
trnC-GCA · NC_072112.1 · 28,442–28,512 bp · +
petN · NC_072112.1 · 29,224–29,313 bp · +
trnT-GGU · NC_072112.1 · 31,958–32,029 bp · +
psbD · NC_072112.1 · 33,336–34,397 bp · +
psbC · NC_072112.1 · 34,345–35,766 bp · +
psbZ · NC_072112.1 · 36,413–36,601 bp · +
trnG-GCC · NC_072112.1 · 36,873–36,943 bp · +
trnS-GGA · NC_072112.1 · 45,707–45,793 bp · +
trnL-UAA · NC_072112.1 · 47,783–48,343 bp · +
trnF-GAA · NC_072112.1 · 48,650–48,722 bp · +
trnM-CAU · NC_072112.1 · 52,737–52,809 bp · +
rbcL · NC_072112.1 · 55,698–57,140 bp · +
accD · NC_072112.1 · 57,874–59,340 bp · +
psaI · NC_072112.1 · 59,914–60,024 bp · +
ycf4 · NC_072112.1 · 60,450–61,004 bp · +
cemA · NC_072112.1 · 61,742–62,341 bp · +
petA · NC_072112.1 · 62,548–63,510 bp · +
petL · NC_072112.1 · 66,232–66,327 bp · +
petG · NC_072112.1 · 66,503–66,616 bp · +
psaJ · NC_072112.1 · 67,324–67,458 bp · +
rpl33 · NC_072112.1 · 67,932–68,132 bp · +
rps18 · NC_072112.1 · 68,307–68,612 bp · +
rps12 · NC_072112.1 · 138,061–138,851 bp · +
psbB · NC_072112.1 · 72,667–74,193 bp · +
psbT · NC_072112.1 · 74,385–74,486 bp · +
psbH · NC_072112.1 · 74,795–75,016 bp · +
petB · NC_072112.1 · 75,141–76,508 bp · +
petD · NC_072112.1 · 76,697–77,898 bp · +
ycf2 · NC_072112.1 · 86,302–93,111 bp · +
ycf15 · NC_072112.1 · 93,253–93,450 bp · +
trnV-GAC · NC_072112.1 · 99,693–99,764 bp · +
rrn16S · NC_072112.1 · 99,992–101,482 bp · +
trnI-GAU · NC_072112.1 · 101,781–102,801 bp · +
trnA-UGC · NC_072112.1 · 102,866–103,746 bp · +
rrn23S · NC_072112.1 · 103,916–106,728 bp · +
rrn4.5S · NC_072112.1 · 106,827–106,929 bp · +
rrn5S · NC_072112.1 · 107,177–107,297 bp · +
trnR-ACG · NC_072112.1 · 107,532–107,605 bp · +
rpl32 · NC_072112.1 · 112,061–112,237 bp · +
trnL-UAG · NC_072112.1 · 112,682–112,761 bp · +
ccsA · NC_072112.1 · 112,858–113,832 bp · +
trnN-GUU · NC_072112.1 · 127,953–128,024 bp · +
rps7 · NC_072112.1 · 138,905–139,372 bp · +
ndhB · NC_072112.1 · 139,636–141,847 bp · +
trnL-CAA · NC_072112.1 · 142,390–142,470 bp · +
trnI-CAU · NC_072112.1 · 149,963–150,036 bp · +
rpl23 · NC_072112.1 · 150,196–150,477 bp · +
rpl2 · NC_072112.1 · 150,496–151,978 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria caryopteroides
ANNOTATED PLASTOME
NC_072112.1
152,073 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38018 76036 114055 152073 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4262 2588 Locate
matK gene − 1954 3315 1362 Locate
rps16 gene − 5135 6298 1164 Locate
trnQ-UUG gene − 7312 7383 72 Locate
psbK gene + 7708 7893 186 Locate
psbI gene + 8285 8395 111 Locate
trnS-GCU gene − 8514 8601 88 Locate
trnG-UCC gene + 9292 10052 761 Locate
trnR-UCU gene + 10223 10294 72 Locate
atpA gene − 10392 11915 1524 Locate
atpF gene − 11998 13225 1228 Locate
atpH gene − 13581 13826 246 Locate
atpI gene − 14822 15565 744 Locate
rps2 gene − 15914 16624 711 Locate
rpoC2 gene − 16841 21046 4206 Locate
rpoC1 gene − 21201 24034 2834 Locate
rpoB gene − 24061 27273 3213 Locate
trnC-GCA gene + 28442 28512 71 Locate
petN gene + 29224 29313 90 Locate
psbM gene − 30349 30453 105 Locate
trnD-GUC gene − 30980 31053 74 Locate
trnY-GUA gene − 31167 31250 84 Locate
trnT-GGU gene + 31958 32029 72 Locate
psbD gene + 33336 34397 1062 Locate
psbC gene + 34345 35766 1422 Locate
trnS-UGA gene − 36002 36093 92 Locate
psbZ gene + 36413 36601 189 Locate
trnG-GCC gene + 36873 36943 71 Locate
trnfM-CAU gene − 37096 37169 74 Locate
rps14 gene − 37319 37621 303 Locate
psaB gene − 37749 39953 2205 Locate
psaA gene − 39979 42231 2253 Locate
ycf3 gene − 42901 44823 1923 Locate
trnS-GGA gene + 45707 45793 87 Locate
rps4 gene − 46079 46684 606 Locate
trnT-UGU gene − 47025 47097 73 Locate
trnL-UAA gene + 47783 48343 561 Locate
trnF-GAA gene + 48650 48722 73 Locate
ndhJ gene − 49371 49847 477 Locate
ndhK gene − 49955 50632 678 Locate
ndhC gene − 50686 51048 363 Locate
trnV-UAC gene − 51904 52556 653 Locate
trnM-CAU gene + 52737 52809 73 Locate
atpE gene − 53025 53426 402 Locate
atpB gene − 53423 54910 1488 Locate
rbcL gene + 55698 57140 1443 Locate
accD gene + 57874 59340 1467 Locate
psaI gene + 59914 60024 111 Locate
ycf4 gene + 60450 61004 555 Locate
cemA gene + 61742 62341 600 Locate
petA gene + 62548 63510 963 Locate
psbJ gene − 64543 64665 123 Locate
psbL gene − 64799 64915 117 Locate
psbF gene − 64939 65058 120 Locate
psbE gene − 65073 65324 252 Locate
petL gene + 66232 66327 96 Locate
petG gene + 66503 66616 114 Locate
trnW-CCA gene − 66735 66808 74 Locate
trnP-UGG gene − 66978 67051 74 Locate
psaJ gene + 67324 67458 135 Locate
rpl33 gene + 67932 68132 201 Locate
rps18 gene + 68307 68612 306 Locate
rpl20 gene − 68850 69236 387 Locate
rps12 gene − 70022 70147 126 Locate
clpP gene − 70290 72222 1933 Locate
psbB gene + 72667 74193 1527 Locate
psbT gene + 74385 74486 102 Locate
psbN gene − 74560 74691 132 Locate
psbH gene + 74795 75016 222 Locate
petB gene + 75141 76508 1368 Locate
petD gene + 76697 77898 1202 Locate
rpoA gene − 78061 79074 1014 Locate
rps11 gene − 79146 79562 417 Locate
rpl36 gene − 79664 79777 114 Locate
infA gene − 79873 80106 234 Locate
rps8 gene − 80226 80636 411 Locate
rpl14 gene − 80810 81178 369 Locate
rpl16 gene − 81305 82531 1227 Locate
rps3 gene − 82686 83348 663 Locate
rpl22 gene − 83350 83805 456 Locate
rps19 gene − 83865 84143 279 Locate
rpl2 gene − 84198 85680 1483 Locate
rpl23 gene − 85699 85980 282 Locate
trnI-CAU gene − 86140 86213 74 Locate
ycf2 gene + 86302 93111 6810 Locate
ycf15 gene + 93253 93450 198 Locate
trnL-CAA gene − 93706 93786 81 Locate
ndhB gene − 94329 96540 2212 Locate
rps7 gene − 96804 97271 468 Locate
rps12 gene − 97325 98115 791 Locate
trnV-GAC gene + 99693 99764 72 Locate
rrn16S gene + 99992 101482 1491 Locate
trnI-GAU gene + 101781 102801 1021 Locate
trnA-UGC gene + 102866 103746 881 Locate
rrn23S gene + 103916 106728 2813 Locate
rrn4.5S gene + 106827 106929 103 Locate
rrn5S gene + 107177 107297 121 Locate
trnR-ACG gene + 107532 107605 74 Locate
trnN-GUU gene − 108152 108223 72 Locate
ndhF gene − 109300 111540 2241 Locate
rpl32 gene + 112061 112237 177 Locate
trnL-UAG gene + 112682 112761 80 Locate
ccsA gene + 112858 113832 975 Locate
psaC gene − 115687 115932 246 Locate
ndhE gene − 116189 116494 306 Locate
ndhG gene − 116715 117245 531 Locate
ndhI gene − 117611 118111 501 Locate
ndhA gene − 118192 120273 2082 Locate
ndhH gene − 120275 121456 1182 Locate
rps15 gene − 121559 121831 273 Locate
ycf1 gene − 122098 127623 5526 Locate
trnN-GUU gene + 127953 128024 72 Locate
trnR-ACG gene − 128571 128644 74 Locate
rrn5S gene − 128879 128999 121 Locate
rrn4.5S gene − 129247 129349 103 Locate
rrn23S gene − 129448 132260 2813 Locate
trnA-UGC gene − 132430 133310 881 Locate
trnI-GAU gene − 133375 134395 1021 Locate
rrn16S gene − 134694 136184 1491 Locate
trnV-GAC gene − 136412 136483 72 Locate
rps12 gene + 138061 138851 791 Locate
rps7 gene + 138905 139372 468 Locate
ndhB gene + 139636 141847 2212 Locate
trnL-CAA gene + 142390 142470 81 Locate
ycf15 gene − 142726 142923 198 Locate
ycf2 gene − 143065 149874 6810 Locate
trnI-CAU gene + 149963 150036 74 Locate
rpl23 gene + 150196 150477 282 Locate
rpl2 gene + 150496 151978 1483 Locate
Status Available
Accession NC_072112.1
Length 152,073 bp
GC content 38.4%
Annotated genes 130
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources