Coordinate-aware organelle record

Scutellaria caryopteroides chloroplast genome

Available NC_072112.1 152,073 bp 130 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

130 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	374	1433	1059
trnK-UUU	gene	translation-rna	−	1674	4262	2588
matK	gene	other	−	1953	3315	1362
rps16	gene	ribosomal-protein	−	5134	6298	1164
trnQ-UUG	gene	translation-rna	−	7311	7383	72
psbK	gene	photosystem-ii	+	7707	7893	186
psbI	gene	photosystem-ii	+	8284	8395	111
trnS-GCU	gene	translation-rna	−	8513	8601	88
trnG-UCC	gene	translation-rna	+	9291	10052	761
trnR-UCU	gene	translation-rna	+	10222	10294	72
atpA	gene	atp-synthase	−	10391	11915	1524
atpF	gene	atp-synthase	−	11997	13225	1228
atpH	gene	atp-synthase	−	13580	13826	246
atpI	gene	atp-synthase	−	14821	15565	744
rps2	gene	ribosomal-protein	−	15913	16624	711
rpoC2	gene	rna-polymerase	−	16840	21046	4206
rpoC1	gene	rna-polymerase	−	21200	24034	2834
rpoB	gene	rna-polymerase	−	24060	27273	3213
trnC-GCA	gene	translation-rna	+	28441	28512	71
petN	gene	cytochrome	+	29223	29313	90
psbM	gene	photosystem-ii	−	30348	30453	105
trnD-GUC	gene	translation-rna	−	30979	31053	74
trnY-GUA	gene	translation-rna	−	31166	31250	84
trnT-GGU	gene	translation-rna	+	31957	32029	72
psbD	gene	photosystem-ii	+	33335	34397	1062
psbC	gene	photosystem-ii	+	34344	35766	1422
trnS-UGA	gene	translation-rna	−	36001	36093	92
psbZ	gene	photosystem-ii	+	36412	36601	189
trnG-GCC	gene	translation-rna	+	36872	36943	71
trnfM-CAU	gene	translation-rna	−	37095	37169	74
rps14	gene	ribosomal-protein	−	37318	37621	303
psaB	gene	photosystem-i	−	37748	39953	2205
psaA	gene	photosystem-i	−	39978	42231	2253
ycf3	gene	other	−	42900	44823	1923
trnS-GGA	gene	translation-rna	+	45706	45793	87
rps4	gene	ribosomal-protein	−	46078	46684	606
trnT-UGU	gene	translation-rna	−	47024	47097	73
trnL-UAA	gene	translation-rna	+	47782	48343	561
trnF-GAA	gene	translation-rna	+	48649	48722	73
ndhJ	gene	nad-dehydrogenase	−	49370	49847	477
ndhK	gene	nad-dehydrogenase	−	49954	50632	678
ndhC	gene	nad-dehydrogenase	−	50685	51048	363
trnV-UAC	gene	translation-rna	−	51903	52556	653
trnM-CAU	gene	translation-rna	+	52736	52809	73
atpE	gene	atp-synthase	−	53024	53426	402
atpB	gene	atp-synthase	−	53422	54910	1488
rbcL	gene	other	+	55697	57140	1443
accD	gene	other	+	57873	59340	1467
psaI	gene	photosystem-i	+	59913	60024	111
ycf4	gene	other	+	60449	61004	555
cemA	gene	other	+	61741	62341	600
petA	gene	cytochrome	+	62547	63510	963
psbJ	gene	photosystem-ii	−	64542	64665	123
psbL	gene	photosystem-ii	−	64798	64915	117
psbF	gene	photosystem-ii	−	64938	65058	120
psbE	gene	photosystem-ii	−	65072	65324	252
petL	gene	cytochrome	+	66231	66327	96
petG	gene	cytochrome	+	66502	66616	114
trnW-CCA	gene	translation-rna	−	66734	66808	74
trnP-UGG	gene	translation-rna	−	66977	67051	74
psaJ	gene	photosystem-i	+	67323	67458	135
rpl33	gene	ribosomal-protein	+	67931	68132	201
rps18	gene	ribosomal-protein	+	68306	68612	306
rpl20	gene	ribosomal-protein	−	68849	69236	387
rps12	gene	ribosomal-protein	−	70021	98115	28094
rps12	gene	ribosomal-protein	+	70021	138851	68830
clpP	gene	other	−	70289	72222	1933
psbB	gene	photosystem-ii	+	72666	74193	1527
psbT	gene	photosystem-ii	+	74384	74486	102
psbN	gene	photosystem-ii	−	74559	74691	132
psbH	gene	photosystem-ii	+	74794	75016	222
petB	gene	cytochrome	+	75140	76508	1368
petD	gene	cytochrome	+	76696	77898	1202
rpoA	gene	rna-polymerase	−	78060	79074	1014
rps11	gene	ribosomal-protein	−	79145	79562	417
rpl36	gene	ribosomal-protein	−	79663	79777	114
infA	gene	other	−	79872	80106	234
rps8	gene	ribosomal-protein	−	80225	80636	411
rpl14	gene	ribosomal-protein	−	80809	81178	369
rpl16	gene	ribosomal-protein	−	81304	82531	1227
rps3	gene	ribosomal-protein	−	82685	83348	663
rpl22	gene	ribosomal-protein	−	83349	83805	456
rps19	gene	ribosomal-protein	−	83864	84143	279
rpl2	gene	ribosomal-protein	−	84197	85680	1483
rpl23	gene	ribosomal-protein	−	85698	85980	282
trnI-CAU	gene	translation-rna	−	86139	86213	74
ycf2	gene	other	+	86301	93111	6810
ycf15	gene	other	+	93252	93450	198
trnL-CAA	gene	translation-rna	−	93705	93786	81
ndhB	gene	nad-dehydrogenase	−	94328	96540	2212
rps7	gene	ribosomal-protein	−	96803	97271	468
trnV-GAC	gene	translation-rna	+	99692	99764	72
rrn16S	gene	ribosomal-rna	+	99991	101482	1491
trnI-GAU	gene	translation-rna	+	101780	102801	1021
trnA-UGC	gene	translation-rna	+	102865	103746	881
rrn23S	gene	ribosomal-rna	+	103915	106728	2813
rrn4.5S	gene	ribosomal-rna	+	106826	106929	103
rrn5S	gene	ribosomal-rna	+	107176	107297	121
trnR-ACG	gene	translation-rna	+	107531	107605	74
trnN-GUU	gene	translation-rna	−	108151	108223	72
ndhF	gene	nad-dehydrogenase	−	109299	111540	2241
rpl32	gene	ribosomal-protein	+	112060	112237	177
trnL-UAG	gene	translation-rna	+	112681	112761	80
ccsA	gene	other	+	112857	113832	975
psaC	gene	photosystem-i	−	115686	115932	246
ndhE	gene	nad-dehydrogenase	−	116188	116494	306
ndhG	gene	nad-dehydrogenase	−	116714	117245	531
ndhI	gene	nad-dehydrogenase	−	117610	118111	501
ndhA	gene	nad-dehydrogenase	−	118191	120273	2082
ndhH	gene	nad-dehydrogenase	−	120274	121456	1182
rps15	gene	ribosomal-protein	−	121558	121831	273
ycf1	gene	other	−	122097	127623	5526
trnN-GUU	gene	translation-rna	+	127952	128024	72
trnR-ACG	gene	translation-rna	−	128570	128644	74
rrn5S	gene	ribosomal-rna	−	128878	128999	121
rrn4.5S	gene	ribosomal-rna	−	129246	129349	103
rrn23S	gene	ribosomal-rna	−	129447	132260	2813
trnA-UGC	gene	translation-rna	−	132429	133310	881
trnI-GAU	gene	translation-rna	−	133374	134395	1021
rrn16S	gene	ribosomal-rna	−	134693	136184	1491
trnV-GAC	gene	translation-rna	−	136411	136483	72
rps7	gene	ribosomal-protein	+	138904	139372	468
ndhB	gene	nad-dehydrogenase	+	139635	141847	2212
trnL-CAA	gene	translation-rna	+	142389	142470	81
ycf15	gene	other	−	142725	142923	198
ycf2	gene	other	−	143064	149874	6810
trnI-CAU	gene	translation-rna	+	149962	150036	74
rpl23	gene	ribosomal-protein	+	150195	150477	282
rpl2	gene	ribosomal-protein	+	150495	151978	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_072112.1DNA · accDNC_072112DNA · atpBNC_072112DNA · matKNC_072112DNA · ndhFNC_072112DNA · psbANC_072112DNA · rbcLNC_072112DNA · rps12NC_072112DNA · ycf1NC_072112