Scutellaria cypria chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR178745.1 · 4–77 bp · −
psbA · OR178745.1 · 395–1,453 bp · −
trnK-UUU · OR178745.1 · 1,695–4,287 bp · −
matK · OR178745.1 · 1,984–3,528 bp · −
rps16 · OR178745.1 · 5,199–6,370 bp · −
trnQ-UUG · OR178745.1 · 7,482–7,553 bp · −
trnS-GCU · OR178745.1 · 8,670–8,757 bp · −
atpA · OR178745.1 · 10,543–12,066 bp · −
atpF · OR178745.1 · 12,150–13,380 bp · −
atpH · OR178745.1 · 13,751–13,996 bp · −
atpI · OR178745.1 · 14,990–15,733 bp · −
psaI · OR178745.1 · 15,941–16,000 bp · −
rps2 · OR178745.1 · 16,080–16,790 bp · −
rpoC2 · OR178745.1 · 17,008–21,207 bp · −
rpoC1 · OR178745.1 · 21,362–24,180 bp · −
rpoB · OR178745.1 · 24,207–27,419 bp · −
psbM · OR178745.1 · 30,505–30,609 bp · −
trnD-GUC · OR178745.1 · 31,141–31,214 bp · −
trnY-GUA · OR178745.1 · 31,328–31,411 bp · −
trnE-UUC · OR178745.1 · 31,471–31,543 bp · −
trnS-UGA · OR178745.1 · 36,168–36,259 bp · −
trnfM-CAU · OR178745.1 · 37,255–37,328 bp · −
rps14 · OR178745.1 · 37,478–37,780 bp · −
psaB · OR178745.1 · 37,911–40,115 bp · −
psaA · OR178745.1 · 40,141–42,393 bp · −
pafI · OR178745.1 · 43,097–45,022 bp · −
rps4 · OR178745.1 · 46,267–46,872 bp · −
trnT-UGU · OR178745.1 · 47,213–47,285 bp · −
ndhJ · OR178745.1 · 49,542–50,018 bp · −
ndhK · OR178745.1 · 50,123–50,800 bp · −
ndhC · OR178745.1 · 50,853–51,215 bp · −
trnV-UAC · OR178745.1 · 52,204–52,862 bp · −
atpE · OR178745.1 · 53,324–53,725 bp · −
atpB · OR178745.1 · 53,722–55,218 bp · −
psbJ · OR178745.1 · 64,385–64,507 bp · −
psbL · OR178745.1 · 64,641–64,757 bp · −
psbF · OR178745.1 · 64,781–64,900 bp · −
psbE · OR178745.1 · 64,915–65,166 bp · −
trnW-CCA · OR178745.1 · 66,582–66,655 bp · −
trnP-UGG · OR178745.1 · 66,825–66,898 bp · −
rpl20 · OR178745.1 · 68,695–69,081 bp · −
rps12 · OR178745.1 · 69,876–69,989 bp · −
rps12 · OR178745.1 · 97,188–97,981 bp · −
clpP1 · OR178745.1 · 70,131–72,066 bp · −
pbf1 · OR178745.1 · 74,395–74,526 bp · −
rpoA · OR178745.1 · 77,907–78,920 bp · −
rps11 · OR178745.1 · 78,992–79,408 bp · −
rpl36 · OR178745.1 · 79,510–79,623 bp · −
infA · OR178745.1 · 79,719–79,952 bp · −
rps8 · OR178745.1 · 80,075–80,485 bp · −
rpl14 · OR178745.1 · 80,650–81,018 bp · −
rpl16 · OR178745.1 · 81,145–82,377 bp · −
rps3 · OR178745.1 · 82,532–83,194 bp · −
rpl22 · OR178745.1 · 83,196–83,651 bp · −
rps19 · OR178745.1 · 83,711–83,989 bp · −
rpl2 · OR178745.1 · 84,045–85,527 bp · −
rpl23 · OR178745.1 · 85,546–85,827 bp · −
trnM-CAU · OR178745.1 · 85,987–86,060 bp · −
trnL-CAA · OR178745.1 · 93,558–93,638 bp · −
ndhB · OR178745.1 · 94,181–96,392 bp · −
rps7 · OR178745.1 · 96,667–97,134 bp · −
trnN-GUU · OR178745.1 · 108,015–108,086 bp · −
ndhF · OR178745.1 · 109,163–111,403 bp · −
ndhD · OR178745.1 · 113,906–115,384 bp · −
psaC · OR178745.1 · 115,541–115,786 bp · −
ndhE · OR178745.1 · 116,042–116,347 bp · −
ndhG · OR178745.1 · 116,571–117,101 bp · −
ndhI · OR178745.1 · 117,450–117,950 bp · −
ndhA · OR178745.1 · 118,031–120,140 bp · −
ndhH · OR178745.1 · 120,142–121,323 bp · −
rps15 · OR178745.1 · 121,420–121,692 bp · −
ycf1 · OR178745.1 · 121,961–127,516 bp · −
trnR-ACG · OR178745.1 · 128,473–128,546 bp · −
rrn5 · OR178745.1 · 128,781–128,901 bp · −
rrn4.5 · OR178745.1 · 129,149–129,251 bp · −
rrn23 · OR178745.1 · 129,350–132,161 bp · −
trnA-UGC · OR178745.1 · 132,331–133,215 bp · −
trnI-GAU · OR178745.1 · 133,280–134,298 bp · −
rrn16 · OR178745.1 · 134,597–136,087 bp · −
trnV-GAC · OR178745.1 · 136,310–136,381 bp · −
ycf15 · OR178745.1 · 142,635–142,832 bp · −
ycf2 · OR178745.1 · 142,974–149,783 bp · −
psbK · OR178745.1 · 7,878–8,063 bp · +
psbI · OR178745.1 · 8,461–8,571 bp · +
trnG-UCC · OR178745.1 · 9,450–10,205 bp · +
trnR-UCU · OR178745.1 · 10,375–10,446 bp · +
trnC-GCA · OR178745.1 · 28,602–28,672 bp · +
petN · OR178745.1 · 29,408–29,497 bp · +
trnT-GGU · OR178745.1 · 32,115–32,186 bp · +
psbD · OR178745.1 · 33,503–34,564 bp · +
psbC · OR178745.1 · 34,512–35,933 bp · +
psbZ · OR178745.1 · 36,579–36,767 bp · +
trnG-GCC · OR178745.1 · 37,040–37,110 bp · +
trnS-GGA · OR178745.1 · 45,896–45,982 bp · +
trnL-UAA · OR178745.1 · 47,948–48,514 bp · +
trnF-GAA · OR178745.1 · 48,820–48,892 bp · +
trnM-CAU · OR178745.1 · 53,043–53,115 bp · +
rbcL · OR178745.1 · 55,987–57,429 bp · +
accD · OR178745.1 · 58,155–59,645 bp · +
psaI · OR178745.1 · 59,883–59,993 bp · +
pafII · OR178745.1 · 60,427–60,981 bp · +
cemA · OR178745.1 · 61,595–62,194 bp · +
petA · OR178745.1 · 62,401–63,363 bp · +
petL · OR178745.1 · 66,089–66,184 bp · +
petG · OR178745.1 · 66,360–66,473 bp · +
psaJ · OR178745.1 · 67,171–67,305 bp · +
rpl33 · OR178745.1 · 67,774–67,974 bp · +
rps18 · OR178745.1 · 68,149–68,454 bp · +
rps12 · OR178745.1 · 137,951–138,744 bp · +
psbB · OR178745.1 · 72,520–74,046 bp · +
psbT · OR178745.1 · 74,227–74,334 bp · +
psbH · OR178745.1 · 74,630–74,851 bp · +
petB · OR178745.1 · 74,976–76,344 bp · +
petD · OR178745.1 · 76,533–77,744 bp · +
ycf2 · OR178745.1 · 86,149–92,958 bp · +
ycf15 · OR178745.1 · 93,100–93,297 bp · +
trnV-GAC · OR178745.1 · 99,551–99,622 bp · +
rrn16 · OR178745.1 · 99,845–101,335 bp · +
trnI-GAU · OR178745.1 · 101,634–102,652 bp · +
trnA-UGC · OR178745.1 · 102,717–103,601 bp · +
rrn23 · OR178745.1 · 103,771–106,582 bp · +
rrn4.5 · OR178745.1 · 106,681–106,783 bp · +
rrn5 · OR178745.1 · 107,031–107,151 bp · +
trnR-ACG · OR178745.1 · 107,386–107,459 bp · +
rpl32 · OR178745.1 · 111,918–112,094 bp · +
trnL-UAG · OR178745.1 · 112,529–112,608 bp · +
ccsA · OR178745.1 · 112,694–113,668 bp · +
trnN-GUU · OR178745.1 · 127,846–127,917 bp · +
rps7 · OR178745.1 · 138,798–139,265 bp · +
ndhB · OR178745.1 · 139,540–141,751 bp · +
trnL-CAA · OR178745.1 · 142,294–142,374 bp · +
trnM-CAU · OR178745.1 · 149,872–149,945 bp · +
rpl23 · OR178745.1 · 150,105–150,386 bp · +
rpl2 · OR178745.1 · 150,405–151,887 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria cypria
ANNOTATED PLASTOME
OR178745.1
151,983 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
Photosystem I
RNA polymerase
Cytochrome
NADH dehydrogenase
Ribosomal RNA
0 37996 75992 113987 151983 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI psaI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1695 4287 2593 Locate
matK gene − 1984 3528 1545 Locate
rps16 gene − 5199 6370 1172 Locate
trnQ-UUG gene − 7482 7553 72 Locate
psbK gene + 7878 8063 186 Locate
psbI gene + 8461 8571 111 Locate
trnS-GCU gene − 8670 8757 88 Locate
trnG-UCC gene + 9450 10205 756 Locate
trnR-UCU gene + 10375 10446 72 Locate
atpA gene − 10543 12066 1524 Locate
atpF gene − 12150 13380 1231 Locate
atpH gene − 13751 13996 246 Locate
atpI gene − 14990 15733 744 Locate
psaI gene − 15941 16000 60 Locate
rps2 gene − 16080 16790 711 Locate
rpoC2 gene − 17008 21207 4200 Locate
rpoC1 gene − 21362 24180 2819 Locate
rpoB gene − 24207 27419 3213 Locate
trnC-GCA gene + 28602 28672 71 Locate
petN gene + 29408 29497 90 Locate
psbM gene − 30505 30609 105 Locate
trnD-GUC gene − 31141 31214 74 Locate
trnY-GUA gene − 31328 31411 84 Locate
trnE-UUC gene − 31471 31543 73 Locate
trnT-GGU gene + 32115 32186 72 Locate
psbD gene + 33503 34564 1062 Locate
psbC gene + 34512 35933 1422 Locate
trnS-UGA gene − 36168 36259 92 Locate
psbZ gene + 36579 36767 189 Locate
trnG-GCC gene + 37040 37110 71 Locate
trnfM-CAU gene − 37255 37328 74 Locate
rps14 gene − 37478 37780 303 Locate
psaB gene − 37911 40115 2205 Locate
psaA gene − 40141 42393 2253 Locate
pafI gene − 43097 45022 1926 Locate
trnS-GGA gene + 45896 45982 87 Locate
rps4 gene − 46267 46872 606 Locate
trnT-UGU gene − 47213 47285 73 Locate
trnL-UAA gene + 47948 48514 567 Locate
trnF-GAA gene + 48820 48892 73 Locate
ndhJ gene − 49542 50018 477 Locate
ndhK gene − 50123 50800 678 Locate
ndhC gene − 50853 51215 363 Locate
trnV-UAC gene − 52204 52862 659 Locate
trnM-CAU gene + 53043 53115 73 Locate
atpE gene − 53324 53725 402 Locate
atpB gene − 53722 55218 1497 Locate
rbcL gene + 55987 57429 1443 Locate
accD gene + 58155 59645 1491 Locate
psaI gene + 59883 59993 111 Locate
pafII gene + 60427 60981 555 Locate
cemA gene + 61595 62194 600 Locate
petA gene + 62401 63363 963 Locate
psbJ gene − 64385 64507 123 Locate
psbL gene − 64641 64757 117 Locate
psbF gene − 64781 64900 120 Locate
psbE gene − 64915 65166 252 Locate
petL gene + 66089 66184 96 Locate
petG gene + 66360 66473 114 Locate
trnW-CCA gene − 66582 66655 74 Locate
trnP-UGG gene − 66825 66898 74 Locate
psaJ gene + 67171 67305 135 Locate
rpl33 gene + 67774 67974 201 Locate
rps18 gene + 68149 68454 306 Locate
rpl20 gene − 68695 69081 387 Locate
rps12 gene − 69876 69989 114 Locate
clpP1 gene − 70131 72066 1936 Locate
psbB gene + 72520 74046 1527 Locate
psbT gene + 74227 74334 108 Locate
pbf1 gene − 74395 74526 132 Locate
psbH gene + 74630 74851 222 Locate
petB gene + 74976 76344 1369 Locate
petD gene + 76533 77744 1212 Locate
rpoA gene − 77907 78920 1014 Locate
rps11 gene − 78992 79408 417 Locate
rpl36 gene − 79510 79623 114 Locate
infA gene − 79719 79952 234 Locate
rps8 gene − 80075 80485 411 Locate
rpl14 gene − 80650 81018 369 Locate
rpl16 gene − 81145 82377 1233 Locate
rps3 gene − 82532 83194 663 Locate
rpl22 gene − 83196 83651 456 Locate
rps19 gene − 83711 83989 279 Locate
rpl2 gene − 84045 85527 1483 Locate
rpl23 gene − 85546 85827 282 Locate
trnM-CAU gene − 85987 86060 74 Locate
ycf2 gene + 86149 92958 6810 Locate
ycf15 gene + 93100 93297 198 Locate
trnL-CAA gene − 93558 93638 81 Locate
ndhB gene − 94181 96392 2212 Locate
rps7 gene − 96667 97134 468 Locate
rps12 gene − 97188 97981 794 Locate
trnV-GAC gene + 99551 99622 72 Locate
rrn16 gene + 99845 101335 1491 Locate
trnI-GAU gene + 101634 102652 1019 Locate
trnA-UGC gene + 102717 103601 885 Locate
rrn23 gene + 103771 106582 2812 Locate
rrn4.5 gene + 106681 106783 103 Locate
rrn5 gene + 107031 107151 121 Locate
trnR-ACG gene + 107386 107459 74 Locate
trnN-GUU gene − 108015 108086 72 Locate
ndhF gene − 109163 111403 2241 Locate
rpl32 gene + 111918 112094 177 Locate
trnL-UAG gene + 112529 112608 80 Locate
ccsA gene + 112694 113668 975 Locate
ndhD gene − 113906 115384 1479 Locate
psaC gene − 115541 115786 246 Locate
ndhE gene − 116042 116347 306 Locate
ndhG gene − 116571 117101 531 Locate
ndhI gene − 117450 117950 501 Locate
ndhA gene − 118031 120140 2110 Locate
ndhH gene − 120142 121323 1182 Locate
rps15 gene − 121420 121692 273 Locate
ycf1 gene − 121961 127516 5556 Locate
trnN-GUU gene + 127846 127917 72 Locate
trnR-ACG gene − 128473 128546 74 Locate
rrn5 gene − 128781 128901 121 Locate
rrn4.5 gene − 129149 129251 103 Locate
rrn23 gene − 129350 132161 2812 Locate
trnA-UGC gene − 132331 133215 885 Locate
trnI-GAU gene − 133280 134298 1019 Locate
rrn16 gene − 134597 136087 1491 Locate
trnV-GAC gene − 136310 136381 72 Locate
rps12 gene + 137951 138744 794 Locate
rps7 gene + 138798 139265 468 Locate
ndhB gene + 139540 141751 2212 Locate
trnL-CAA gene + 142294 142374 81 Locate
ycf15 gene − 142635 142832 198 Locate
ycf2 gene − 142974 149783 6810 Locate
trnM-CAU gene + 149872 149945 74 Locate
rpl23 gene + 150105 150386 282 Locate
rpl2 gene + 150405 151887 1483 Locate
Status Available
Accession OR178745.1
Length 151,983 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 15 Ribosomal Protein 26 Atp Synthase 6 Photosystem I 6 Rna Polymerase 4 Cytochrome 6 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources