Coordinate-aware organelle record

Scutellaria cypria chloroplast genome

Available OR178745.1 151,983 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	3	77	74
psbA	gene	photosystem-ii	−	394	1453	1059
trnK-UUU	gene	translation-rna	−	1694	4287	2593
matK	gene	other	−	1983	3528	1545
rps16	gene	ribosomal-protein	−	5198	6370	1172
trnQ-UUG	gene	translation-rna	−	7481	7553	72
psbK	gene	photosystem-ii	+	7877	8063	186
psbI	gene	photosystem-ii	+	8460	8571	111
trnS-GCU	gene	translation-rna	−	8669	8757	88
trnG-UCC	gene	translation-rna	+	9449	10205	756
trnR-UCU	gene	translation-rna	+	10374	10446	72
atpA	gene	atp-synthase	−	10542	12066	1524
atpF	gene	atp-synthase	−	12149	13380	1231
atpH	gene	atp-synthase	−	13750	13996	246
atpI	gene	atp-synthase	−	14989	15733	744
psaI	gene	photosystem-i	−	15940	16000	60
rps2	gene	ribosomal-protein	−	16079	16790	711
rpoC2	gene	rna-polymerase	−	17007	21207	4200
rpoC1	gene	rna-polymerase	−	21361	24180	2819
rpoB	gene	rna-polymerase	−	24206	27419	3213
trnC-GCA	gene	translation-rna	+	28601	28672	71
petN	gene	cytochrome	+	29407	29497	90
psbM	gene	photosystem-ii	−	30504	30609	105
trnD-GUC	gene	translation-rna	−	31140	31214	74
trnY-GUA	gene	translation-rna	−	31327	31411	84
trnE-UUC	gene	translation-rna	−	31470	31543	73
trnT-GGU	gene	translation-rna	+	32114	32186	72
psbD	gene	photosystem-ii	+	33502	34564	1062
psbC	gene	photosystem-ii	+	34511	35933	1422
trnS-UGA	gene	translation-rna	−	36167	36259	92
psbZ	gene	photosystem-ii	+	36578	36767	189
trnG-GCC	gene	translation-rna	+	37039	37110	71
trnfM-CAU	gene	translation-rna	−	37254	37328	74
rps14	gene	ribosomal-protein	−	37477	37780	303
psaB	gene	photosystem-i	−	37910	40115	2205
psaA	gene	photosystem-i	−	40140	42393	2253
pafI	gene	other	−	43096	45022	1926
trnS-GGA	gene	translation-rna	+	45895	45982	87
rps4	gene	ribosomal-protein	−	46266	46872	606
trnT-UGU	gene	translation-rna	−	47212	47285	73
trnL-UAA	gene	translation-rna	+	47947	48514	567
trnF-GAA	gene	translation-rna	+	48819	48892	73
ndhJ	gene	nad-dehydrogenase	−	49541	50018	477
ndhK	gene	nad-dehydrogenase	−	50122	50800	678
ndhC	gene	nad-dehydrogenase	−	50852	51215	363
trnV-UAC	gene	translation-rna	−	52203	52862	659
trnM-CAU	gene	translation-rna	+	53042	53115	73
atpE	gene	atp-synthase	−	53323	53725	402
atpB	gene	atp-synthase	−	53721	55218	1497
rbcL	gene	other	+	55986	57429	1443
accD	gene	other	+	58154	59645	1491
psaI	gene	photosystem-i	+	59882	59993	111
pafII	gene	other	+	60426	60981	555
cemA	gene	other	+	61594	62194	600
petA	gene	cytochrome	+	62400	63363	963
psbJ	gene	photosystem-ii	−	64384	64507	123
psbL	gene	photosystem-ii	−	64640	64757	117
psbF	gene	photosystem-ii	−	64780	64900	120
psbE	gene	photosystem-ii	−	64914	65166	252
petL	gene	cytochrome	+	66088	66184	96
petG	gene	cytochrome	+	66359	66473	114
trnW-CCA	gene	translation-rna	−	66581	66655	74
trnP-UGG	gene	translation-rna	−	66824	66898	74
psaJ	gene	photosystem-i	+	67170	67305	135
rpl33	gene	ribosomal-protein	+	67773	67974	201
rps18	gene	ribosomal-protein	+	68148	68454	306
rpl20	gene	ribosomal-protein	−	68694	69081	387
rps12	gene	ribosomal-protein	−	69875	97981	28106
rps12	gene	ribosomal-protein	+	69875	138744	68869
clpP1	gene	other	−	70130	72066	1936
psbB	gene	photosystem-ii	+	72519	74046	1527
psbT	gene	photosystem-ii	+	74226	74334	108
pbf1	gene	other	−	74394	74526	132
psbH	gene	photosystem-ii	+	74629	74851	222
petB	gene	cytochrome	+	74975	76344	1369
petD	gene	cytochrome	+	76532	77744	1212
rpoA	gene	rna-polymerase	−	77906	78920	1014
rps11	gene	ribosomal-protein	−	78991	79408	417
rpl36	gene	ribosomal-protein	−	79509	79623	114
infA	gene	other	−	79718	79952	234
rps8	gene	ribosomal-protein	−	80074	80485	411
rpl14	gene	ribosomal-protein	−	80649	81018	369
rpl16	gene	ribosomal-protein	−	81144	82377	1233
rps3	gene	ribosomal-protein	−	82531	83194	663
rpl22	gene	ribosomal-protein	−	83195	83651	456
rps19	gene	ribosomal-protein	−	83710	83989	279
rpl2	gene	ribosomal-protein	−	84044	85527	1483
rpl23	gene	ribosomal-protein	−	85545	85827	282
trnM-CAU	gene	translation-rna	−	85986	86060	74
ycf2	gene	other	+	86148	92958	6810
ycf15	gene	other	+	93099	93297	198
trnL-CAA	gene	translation-rna	−	93557	93638	81
ndhB	gene	nad-dehydrogenase	−	94180	96392	2212
rps7	gene	ribosomal-protein	−	96666	97134	468
trnV-GAC	gene	translation-rna	+	99550	99622	72
rrn16	gene	ribosomal-rna	+	99844	101335	1491
trnI-GAU	gene	translation-rna	+	101633	102652	1019
trnA-UGC	gene	translation-rna	+	102716	103601	885
rrn23	gene	ribosomal-rna	+	103770	106582	2812
rrn4.5	gene	ribosomal-rna	+	106680	106783	103
rrn5	gene	ribosomal-rna	+	107030	107151	121
trnR-ACG	gene	translation-rna	+	107385	107459	74
trnN-GUU	gene	translation-rna	−	108014	108086	72
ndhF	gene	nad-dehydrogenase	−	109162	111403	2241
rpl32	gene	ribosomal-protein	+	111917	112094	177
trnL-UAG	gene	translation-rna	+	112528	112608	80
ccsA	gene	other	+	112693	113668	975
ndhD	gene	nad-dehydrogenase	−	113905	115384	1479
psaC	gene	photosystem-i	−	115540	115786	246
ndhE	gene	nad-dehydrogenase	−	116041	116347	306
ndhG	gene	nad-dehydrogenase	−	116570	117101	531
ndhI	gene	nad-dehydrogenase	−	117449	117950	501
ndhA	gene	nad-dehydrogenase	−	118030	120140	2110
ndhH	gene	nad-dehydrogenase	−	120141	121323	1182
rps15	gene	ribosomal-protein	−	121419	121692	273
ycf1	gene	other	−	121960	127516	5556
trnN-GUU	gene	translation-rna	+	127845	127917	72
trnR-ACG	gene	translation-rna	−	128472	128546	74
rrn5	gene	ribosomal-rna	−	128780	128901	121
rrn4.5	gene	ribosomal-rna	−	129148	129251	103
rrn23	gene	ribosomal-rna	−	129349	132161	2812
trnA-UGC	gene	translation-rna	−	132330	133215	885
trnI-GAU	gene	translation-rna	−	133279	134298	1019
rrn16	gene	ribosomal-rna	−	134596	136087	1491
trnV-GAC	gene	translation-rna	−	136309	136381	72
rps7	gene	ribosomal-protein	+	138797	139265	468
ndhB	gene	nad-dehydrogenase	+	139539	141751	2212
trnL-CAA	gene	translation-rna	+	142293	142374	81
ycf15	gene	other	−	142634	142832	198
ycf2	gene	other	−	142973	149783	6810
trnM-CAU	gene	translation-rna	+	149871	149945	74
rpl23	gene	ribosomal-protein	+	150104	150386	282
rpl2	gene	ribosomal-protein	+	150404	151887	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeOR178745.1DNA · accDOR178745DNA · atpBOR178745DNA · matKOR178745DNA · ndhFOR178745DNA · psbAOR178745DNA · rbcLOR178745DNA · rps12OR178745DNA · ycf1OR178745