Scutellaria franchetiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_059813.1 · 3–76 bp · −
psbA · NC_059813.1 · 365–1,423 bp · −
trnK-UUU · NC_059813.1 · 1,665–4,253 bp · −
matK · NC_059813.1 · 1,960–3,495 bp · −
rps16 · NC_059813.1 · 5,134–6,298 bp · −
trnQ-UUG · NC_059813.1 · 7,303–7,374 bp · −
trnS-GCU · NC_059813.1 · 8,497–8,584 bp · −
atpA · NC_059813.1 · 10,357–11,880 bp · −
atpF · NC_059813.1 · 11,963–13,190 bp · −
atpH · NC_059813.1 · 13,546–13,791 bp · −
atpI · NC_059813.1 · 14,787–15,530 bp · −
rps2 · NC_059813.1 · 15,879–16,589 bp · −
rpoC2 · NC_059813.1 · 16,806–21,011 bp · −
rpoC1 · NC_059813.1 · 21,166–23,995 bp · −
rpoB · NC_059813.1 · 24,022–27,234 bp · −
psbM · NC_059813.1 · 30,260–30,364 bp · −
trnD-GUC · NC_059813.1 · 30,891–30,964 bp · −
trnY-GUA · NC_059813.1 · 31,078–31,161 bp · −
trnS-UGA · NC_059813.1 · 35,764–35,855 bp · −
trnfM-CAU · NC_059813.1 · 36,859–36,932 bp · −
rps14 · NC_059813.1 · 37,082–37,384 bp · −
psaB · NC_059813.1 · 37,512–39,716 bp · −
psaA · NC_059813.1 · 39,742–41,994 bp · −
ycf3 · NC_059813.1 · 42,663–44,586 bp · −
rps4 · NC_059813.1 · 45,843–46,448 bp · −
trnT-UGU · NC_059813.1 · 46,790–46,862 bp · −
ndhJ · NC_059813.1 · 49,141–49,617 bp · −
ndhK · NC_059813.1 · 49,725–50,402 bp · −
ndhC · NC_059813.1 · 50,455–50,817 bp · −
trnV-UAC · NC_059813.1 · 51,665–52,317 bp · −
atpE · NC_059813.1 · 52,786–53,187 bp · −
atpB · NC_059813.1 · 53,184–54,671 bp · −
psbJ · NC_059813.1 · 64,290–64,412 bp · −
psbL · NC_059813.1 · 64,546–64,662 bp · −
psbF · NC_059813.1 · 64,686–64,805 bp · −
psbE · NC_059813.1 · 64,820–65,071 bp · −
trnW-CCA · NC_059813.1 · 66,483–66,556 bp · −
trnP-UGG · NC_059813.1 · 66,726–66,799 bp · −
rpl20 · NC_059813.1 · 68,607–68,993 bp · −
rps12 · NC_059813.1 · 69,782–69,907 bp · −
rps12 · NC_059813.1 · 97,104–97,894 bp · −
clpP · NC_059813.1 · 70,050–71,982 bp · −
psbN · NC_059813.1 · 74,342–74,473 bp · −
rps11 · NC_059813.1 · 78,935–79,351 bp · −
rpl36 · NC_059813.1 · 79,453–79,566 bp · −
infA · NC_059813.1 · 79,662–79,895 bp · −
rps8 · NC_059813.1 · 80,015–80,425 bp · −
rpl14 · NC_059813.1 · 80,595–80,963 bp · −
rpl16 · NC_059813.1 · 81,090–82,323 bp · −
rps3 · NC_059813.1 · 82,478–83,140 bp · −
rpl22 · NC_059813.1 · 83,142–83,597 bp · −
rps19 · NC_059813.1 · 83,657–83,935 bp · −
rpl2 · NC_059813.1 · 83,990–85,472 bp · −
rpl23 · NC_059813.1 · 85,491–85,772 bp · −
trnI-CAU · NC_059813.1 · 85,932–86,005 bp · −
trnL-CAA · NC_059813.1 · 93,474–93,554 bp · −
ndhB · NC_059813.1 · 94,097–96,308 bp · −
rps7 · NC_059813.1 · 96,583–97,050 bp · −
trnN-GUU · NC_059813.1 · 107,934–108,005 bp · −
ndhF · NC_059813.1 · 109,082–111,322 bp · −
psaC · NC_059813.1 · 115,447–115,692 bp · −
ndhE · NC_059813.1 · 115,949–116,254 bp · −
ndhG · NC_059813.1 · 116,485–117,015 bp · −
ndhI · NC_059813.1 · 117,380–117,880 bp · −
ndhA · NC_059813.1 · 117,961–120,053 bp · −
ndhH · NC_059813.1 · 120,055–121,236 bp · −
rps15 · NC_059813.1 · 121,339–121,611 bp · −
ycf1 · NC_059813.1 · 121,878–127,412 bp · −
trnR-ACG · NC_059813.1 · 128,360–128,433 bp · −
rrn5S · NC_059813.1 · 128,668–128,788 bp · −
rrn4.5S · NC_059813.1 · 129,036–129,138 bp · −
rrn23S · NC_059813.1 · 129,237–132,049 bp · −
trnA-UGC · NC_059813.1 · 132,219–133,102 bp · −
trnI-GAU · NC_059813.1 · 133,167–134,187 bp · −
rrn16S · NC_059813.1 · 134,486–135,976 bp · −
trnV-GAC · NC_059813.1 · 136,204–136,275 bp · −
ycf15 · NC_059813.1 · 142,529–142,726 bp · −
ycf2 · NC_059813.1 · 142,844–149,653 bp · −
psbK · NC_059813.1 · 7,699–7,884 bp · +
psbI · NC_059813.1 · 8,276–8,386 bp · +
trnG-UCC · NC_059813.1 · 9,266–10,018 bp · +
trnR-UCU · NC_059813.1 · 10,189–10,260 bp · +
trnC-GCA · NC_059813.1 · 28,395–28,465 bp · +
petN · NC_059813.1 · 29,177–29,266 bp · +
trnT-GGU · NC_059813.1 · 31,865–31,936 bp · +
psbD · NC_059813.1 · 33,098–34,159 bp · +
psbC · NC_059813.1 · 34,107–35,528 bp · +
psbZ · NC_059813.1 · 36,175–36,363 bp · +
trnG-GCC · NC_059813.1 · 36,635–36,705 bp · +
trnS-GGA · NC_059813.1 · 45,471–45,557 bp · +
trnL-UAA · NC_059813.1 · 47,547–48,108 bp · +
trnF-GAA · NC_059813.1 · 48,415–48,487 bp · +
trnM-CAU · NC_059813.1 · 52,498–52,570 bp · +
rbcL · NC_059813.1 · 55,442–56,884 bp · +
accD · NC_059813.1 · 57,626–59,092 bp · +
psaI · NC_059813.1 · 59,650–59,760 bp · +
ycf4 · NC_059813.1 · 60,194–60,748 bp · +
cemA · NC_059813.1 · 61,487–62,086 bp · +
petA · NC_059813.1 · 62,293–63,255 bp · +
petL · NC_059813.1 · 65,980–66,075 bp · +
petG · NC_059813.1 · 66,251–66,364 bp · +
psaJ · NC_059813.1 · 67,072–67,206 bp · +
rpl33 · NC_059813.1 · 67,680–67,880 bp · +
rps18 · NC_059813.1 · 68,065–68,370 bp · +
rps12 · NC_059813.1 · 137,853–138,081 bp · +
rps12 · NC_059813.1 · 138,618–138,643 bp · +
psbB · NC_059813.1 · 72,449–73,975 bp · +
psbT · NC_059813.1 · 74,167–74,268 bp · +
psbH · NC_059813.1 · 74,577–74,798 bp · +
petB · NC_059813.1 · 74,923–76,290 bp · +
petD · NC_059813.1 · 76,487–77,688 bp · +
ycf2 · NC_059813.1 · 86,094–92,903 bp · +
ycf15 · NC_059813.1 · 93,021–93,218 bp · +
trnV-GAC · NC_059813.1 · 99,472–99,543 bp · +
rrn16S · NC_059813.1 · 99,771–101,261 bp · +
trnI-GAU · NC_059813.1 · 101,560–102,580 bp · +
trnA-UGC · NC_059813.1 · 102,645–103,528 bp · +
rrn23S · NC_059813.1 · 103,698–106,510 bp · +
rrn4.5S · NC_059813.1 · 106,609–106,711 bp · +
rrn5S · NC_059813.1 · 106,959–107,079 bp · +
trnR-ACG · NC_059813.1 · 107,314–107,387 bp · +
ycf1 · NC_059813.1 · 108,335–109,117 bp · +
rpl32 · NC_059813.1 · 111,834–112,010 bp · +
trnL-UAG · NC_059813.1 · 112,455–112,534 bp · +
ccsA · NC_059813.1 · 112,618–113,592 bp · +
trnN-GUU · NC_059813.1 · 127,742–127,813 bp · +
rps7 · NC_059813.1 · 138,697–139,164 bp · +
ndhB · NC_059813.1 · 139,439–141,650 bp · +
trnL-CAA · NC_059813.1 · 142,193–142,273 bp · +
trnI-CAU · NC_059813.1 · 149,742–149,815 bp · +
rpl23 · NC_059813.1 · 149,975–150,256 bp · +
rpl2 · NC_059813.1 · 150,275–151,757 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria franchetiana
ANNOTATED PLASTOME
NC_059813.1
151,852 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37963 75926 113889 151852 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5134 6298 1165 Locate
trnQ-UUG gene − 7303 7374 72 Locate
psbK gene + 7699 7884 186 Locate
psbI gene + 8276 8386 111 Locate
trnS-GCU gene − 8497 8584 88 Locate
trnG-UCC gene + 9266 10018 753 Locate
trnR-UCU gene + 10189 10260 72 Locate
atpA gene − 10357 11880 1524 Locate
atpF gene − 11963 13190 1228 Locate
atpH gene − 13546 13791 246 Locate
atpI gene − 14787 15530 744 Locate
rps2 gene − 15879 16589 711 Locate
rpoC2 gene − 16806 21011 4206 Locate
rpoC1 gene − 21166 23995 2830 Locate
rpoB gene − 24022 27234 3213 Locate
trnC-GCA gene + 28395 28465 71 Locate
petN gene + 29177 29266 90 Locate
psbM gene − 30260 30364 105 Locate
trnD-GUC gene − 30891 30964 74 Locate
trnY-GUA gene − 31078 31161 84 Locate
trnT-GGU gene + 31865 31936 72 Locate
psbD gene + 33098 34159 1062 Locate
psbC gene + 34107 35528 1422 Locate
trnS-UGA gene − 35764 35855 92 Locate
psbZ gene + 36175 36363 189 Locate
trnG-GCC gene + 36635 36705 71 Locate
trnfM-CAU gene − 36859 36932 74 Locate
rps14 gene − 37082 37384 303 Locate
psaB gene − 37512 39716 2205 Locate
psaA gene − 39742 41994 2253 Locate
ycf3 gene − 42663 44586 1924 Locate
trnS-GGA gene + 45471 45557 87 Locate
rps4 gene − 45843 46448 606 Locate
trnT-UGU gene − 46790 46862 73 Locate
trnL-UAA gene + 47547 48108 562 Locate
trnF-GAA gene + 48415 48487 73 Locate
ndhJ gene − 49141 49617 477 Locate
ndhK gene − 49725 50402 678 Locate
ndhC gene − 50455 50817 363 Locate
trnV-UAC gene − 51665 52317 653 Locate
trnM-CAU gene + 52498 52570 73 Locate
atpE gene − 52786 53187 402 Locate
atpB gene − 53184 54671 1488 Locate
rbcL gene + 55442 56884 1443 Locate
accD gene + 57626 59092 1467 Locate
psaI gene + 59650 59760 111 Locate
ycf4 gene + 60194 60748 555 Locate
cemA gene + 61487 62086 600 Locate
petA gene + 62293 63255 963 Locate
psbJ gene − 64290 64412 123 Locate
psbL gene − 64546 64662 117 Locate
psbF gene − 64686 64805 120 Locate
psbE gene − 64820 65071 252 Locate
petL gene + 65980 66075 96 Locate
petG gene + 66251 66364 114 Locate
trnW-CCA gene − 66483 66556 74 Locate
trnP-UGG gene − 66726 66799 74 Locate
psaJ gene + 67072 67206 135 Locate
rpl33 gene + 67680 67880 201 Locate
rps18 gene + 68065 68370 306 Locate
rpl20 gene − 68607 68993 387 Locate
rps12 gene − 69782 69907 126 Locate
clpP gene − 70050 71982 1933 Locate
psbB gene + 72449 73975 1527 Locate
psbT gene + 74167 74268 102 Locate
psbN gene − 74342 74473 132 Locate
psbH gene + 74577 74798 222 Locate
petB gene + 74923 76290 1368 Locate
petD gene + 76487 77688 1202 Locate
rps11 gene − 78935 79351 417 Locate
rpl36 gene − 79453 79566 114 Locate
infA gene − 79662 79895 234 Locate
rps8 gene − 80015 80425 411 Locate
rpl14 gene − 80595 80963 369 Locate
rpl16 gene − 81090 82323 1234 Locate
rps3 gene − 82478 83140 663 Locate
rpl22 gene − 83142 83597 456 Locate
rps19 gene − 83657 83935 279 Locate
rpl2 gene − 83990 85472 1483 Locate
rpl23 gene − 85491 85772 282 Locate
trnI-CAU gene − 85932 86005 74 Locate
ycf2 gene + 86094 92903 6810 Locate
ycf15 gene + 93021 93218 198 Locate
trnL-CAA gene − 93474 93554 81 Locate
ndhB gene − 94097 96308 2212 Locate
rps7 gene − 96583 97050 468 Locate
rps12 gene − 97104 97894 791 Locate
trnV-GAC gene + 99472 99543 72 Locate
rrn16S gene + 99771 101261 1491 Locate
trnI-GAU gene + 101560 102580 1021 Locate
trnA-UGC gene + 102645 103528 884 Locate
rrn23S gene + 103698 106510 2813 Locate
rrn4.5S gene + 106609 106711 103 Locate
rrn5S gene + 106959 107079 121 Locate
trnR-ACG gene + 107314 107387 74 Locate
trnN-GUU gene − 107934 108005 72 Locate
ycf1 gene + 108335 109117 783 Locate
ndhF gene − 109082 111322 2241 Locate
rpl32 gene + 111834 112010 177 Locate
trnL-UAG gene + 112455 112534 80 Locate
ccsA gene + 112618 113592 975 Locate
psaC gene − 115447 115692 246 Locate
ndhE gene − 115949 116254 306 Locate
ndhG gene − 116485 117015 531 Locate
ndhI gene − 117380 117880 501 Locate
ndhA gene − 117961 120053 2093 Locate
ndhH gene − 120055 121236 1182 Locate
rps15 gene − 121339 121611 273 Locate
ycf1 gene − 121878 127412 5535 Locate
trnN-GUU gene + 127742 127813 72 Locate
trnR-ACG gene − 128360 128433 74 Locate
rrn5S gene − 128668 128788 121 Locate
rrn4.5S gene − 129036 129138 103 Locate
rrn23S gene − 129237 132049 2813 Locate
trnA-UGC gene − 132219 133102 884 Locate
trnI-GAU gene − 133167 134187 1021 Locate
rrn16S gene − 134486 135976 1491 Locate
trnV-GAC gene − 136204 136275 72 Locate
rps12 gene + 137853 138081 229 Locate
rps12 gene + 138618 138643 26 Locate
rps7 gene + 138697 139164 468 Locate
ndhB gene + 139439 141650 2212 Locate
trnL-CAA gene + 142193 142273 81 Locate
ycf15 gene − 142529 142726 198 Locate
ycf2 gene − 142844 149653 6810 Locate
trnI-CAU gene + 149742 149815 74 Locate
rpl23 gene + 149975 150256 282 Locate
rpl2 gene + 150275 151757 1483 Locate
Status Available
Accession NC_059813.1
Length 151,852 bp
GC content 38.4%
Annotated genes 130
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 3 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources