Scutellaria gardoquioides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW413436.1 · 3–76 bp · −
psbA · MW413436.1 · 270–1,328 bp · −
trnK-UUU · MW413436.1 · 1,556–4,137 bp · −
matK · MW413436.1 · 1,847–3,196 bp · −
rps16 · MW413436.1 · 5,030–6,206 bp · −
trnQ-UUC · MW413436.1 · 7,308–7,379 bp · −
trnS-GCU · MW413436.1 · 8,504–8,591 bp · −
atpA · MW413436.1 · 10,397–11,920 bp · −
atpF · MW413436.1 · 12,013–13,242 bp · −
atpH · MW413436.1 · 13,609–13,854 bp · −
atpI · MW413436.1 · 14,842–15,585 bp · −
rps2 · MW413436.1 · 15,935–16,645 bp · −
rpoC2 · MW413436.1 · 16,862–21,067 bp · −
rpoC1 · MW413436.1 · 21,222–24,040 bp · −
rpoB · MW413436.1 · 24,067–27,279 bp · −
psbM · MW413436.1 · 30,301–30,405 bp · −
trnD-GUC · MW413436.1 · 30,932–31,005 bp · −
trnY-GUA · MW413436.1 · 31,119–31,202 bp · −
trnE-UUC · MW413436.1 · 31,262–31,334 bp · −
trnS-UCA · MW413436.1 · 35,965–36,057 bp · −
trnfM-CAU · MW413436.1 · 37,042–37,115 bp · −
rps14 · MW413436.1 · 37,265–37,567 bp · −
psaB · MW413436.1 · 37,695–39,899 bp · −
psaA · MW413436.1 · 39,925–42,177 bp · −
ycf3 · MW413436.1 · 42,878–44,795 bp · −
rps4 · MW413436.1 · 46,059–46,664 bp · −
trnT-UGU · MW413436.1 · 46,998–47,070 bp · −
ndhJ · MW413436.1 · 49,352–49,828 bp · −
ndhK · MW413436.1 · 49,936–50,613 bp · −
ndhC · MW413436.1 · 50,666–51,028 bp · −
trnV-UAC · MW413436.1 · 51,482–52,135 bp · −
atpE · MW413436.1 · 52,597–52,998 bp · −
atpB · MW413436.1 · 52,995–54,491 bp · −
psbJ · MW413436.1 · 64,250–64,372 bp · −
psbL · MW413436.1 · 64,506–64,622 bp · −
psbF · MW413436.1 · 64,646–64,765 bp · −
psbE · MW413436.1 · 64,780–65,031 bp · −
trnW-CCA · MW413436.1 · 66,440–66,513 bp · −
trnP-UGG · MW413436.1 · 66,673–66,746 bp · −
rpl20 · MW413436.1 · 68,549–68,935 bp · −
rps12 · MW413436.1 · 69,722–69,847 bp · −
rps12 · MW413436.1 · 97,073–97,863 bp · −
clpP · MW413436.1 · 69,982–71,922 bp · −
psbN · MW413436.1 · 74,274–74,405 bp · −
rpoA · MW413436.1 · 77,971–78,795 bp · −
rps11 · MW413436.1 · 78,867–79,283 bp · −
rpl36 · MW413436.1 · 79,386–79,499 bp · −
infA · MW413436.1 · 79,595–79,828 bp · −
rps8 · MW413436.1 · 79,948–80,358 bp · −
rpl14 · MW413436.1 · 80,529–80,897 bp · −
rpl16 · MW413436.1 · 81,025–82,271 bp · −
rps3 · MW413436.1 · 82,419–83,081 bp · −
rpl22 · MW413436.1 · 83,083–83,538 bp · −
rps19 · MW413436.1 · 83,598–83,747 bp · −
rpl2 · MW413436.1 · 83,931–85,413 bp · −
rpl23 · MW413436.1 · 85,432–85,713 bp · −
trnI-CAU · MW413436.1 · 85,873–85,946 bp · −
trnL-CAA · MW413436.1 · 93,444–93,524 bp · −
ndhB · MW413436.1 · 94,067–96,278 bp · −
rps7 · MW413436.1 · 96,552–97,019 bp · −
ndhF · MW413436.1 · 109,033–111,273 bp · −
ndhD · MW413436.1 · 113,771–115,300 bp · −
psaC · MW413436.1 · 115,401–115,646 bp · −
ndhE · MW413436.1 · 115,902–116,207 bp · −
ndhG · MW413436.1 · 116,418–116,948 bp · −
ndhI · MW413436.1 · 117,306–117,806 bp · −
ndhA · MW413436.1 · 117,887–119,974 bp · −
ndhH · MW413436.1 · 119,976–121,157 bp · −
rps15 · MW413436.1 · 121,254–121,526 bp · −
ycf1 · MW413436.1 · 121,788–127,319 bp · −
trnR-ACC · MW413436.1 · 128,277–128,350 bp · −
rrn5 · MW413436.1 · 128,585–128,705 bp · −
rrn4.5 · MW413436.1 · 128,953–129,055 bp · −
rrn23 · MW413436.1 · 129,154–131,968 bp · −
trnA-UGC · MW413436.1 · 132,138–133,017 bp · −
trnI-GAU · MW413436.1 · 133,083–134,101 bp · −
rrn16 · MW413436.1 · 134,392–135,882 bp · −
trnV-GAC · MW413436.1 · 136,110–136,181 bp · −
ycf15 · MW413436.1 · 142,416–142,613 bp · −
ycf2 · MW413436.1 · 142,755–149,564 bp · −
psbK · MW413436.1 · 7,705–7,890 bp · +
psbI · MW413436.1 · 8,284–8,394 bp · +
trnG-UCC · MW413436.1 · 9,302–10,053 bp · +
trnR-UCU · MW413436.1 · 10,228–10,299 bp · +
trnC-GCA · MW413436.1 · 28,433–28,503 bp · +
petN · MW413436.1 · 29,197–29,286 bp · +
trnT-GGU · MW413436.1 · 31,910–31,981 bp · +
psbD · MW413436.1 · 33,292–34,353 bp · +
psbC · MW413436.1 · 34,301–35,722 bp · +
psbZ · MW413436.1 · 36,377–36,565 bp · +
trnG-GCC · MW413436.1 · 36,824–36,894 bp · +
trnS-GGA · MW413436.1 · 45,689–45,775 bp · +
trnL-UAA · MW413436.1 · 47,753–48,324 bp · +
trnF-GAA · MW413436.1 · 48,629–48,701 bp · +
trnM-CAU · MW413436.1 · 52,316–52,388 bp · +
rbcL · MW413436.1 · 55,258–56,700 bp · +
accD · MW413436.1 · 57,422–58,900 bp · +
psaI · MW413436.1 · 59,610–59,720 bp · +
ycf4 · MW413436.1 · 60,154–60,708 bp · +
cemA · MW413436.1 · 61,391–62,050 bp · +
petA · MW413436.1 · 62,257–63,219 bp · +
petL · MW413436.1 · 65,937–66,032 bp · +
petG · MW413436.1 · 66,208–66,321 bp · +
psaJ · MW413436.1 · 67,019–67,153 bp · +
rpl33 · MW413436.1 · 67,637–67,837 bp · +
rps18 · MW413436.1 · 68,010–68,315 bp · +
rps12 · MW413436.1 · 137,736–138,526 bp · +
psbB · MW413436.1 · 72,392–73,918 bp · +
psbT · MW413436.1 · 74,106–74,213 bp · +
psbH · MW413436.1 · 74,509–74,730 bp · +
petB · MW413436.1 · 74,856–76,224 bp · +
petD · MW413436.1 · 76,413–77,614 bp · +
ycf2 · MW413436.1 · 86,035–92,844 bp · +
ycf15 · MW413436.1 · 92,986–93,183 bp · +
trnV-GAC · MW413436.1 · 99,418–99,489 bp · +
rrn16 · MW413436.1 · 99,717–101,207 bp · +
trnI-GAU · MW413436.1 · 101,498–102,516 bp · +
trnA-UGC · MW413436.1 · 102,582–103,461 bp · +
rrn23 · MW413436.1 · 103,631–106,445 bp · +
rrn4.5 · MW413436.1 · 106,544–106,646 bp · +
rrn5 · MW413436.1 · 106,894–107,014 bp · +
trnR-ACC · MW413436.1 · 107,249–107,322 bp · +
trnN-GUU · MW413436.1 · 107,879–107,950 bp · +
rpl32 · MW413436.1 · 111,795–111,971 bp · +
trnL-UAG · MW413436.1 · 112,398–112,477 bp · +
ccsA · MW413436.1 · 112,562–113,536 bp · +
trnN-GUU · MW413436.1 · 127,649–127,720 bp · +
rps7 · MW413436.1 · 138,580–139,047 bp · +
ndhB · MW413436.1 · 139,321–141,532 bp · +
trnL-CAA · MW413436.1 · 142,075–142,155 bp · +
trnI-CAU · MW413436.1 · 149,653–149,726 bp · +
rpl23 · MW413436.1 · 149,886–150,167 bp · +
rpl2 · MW413436.1 · 150,186–151,668 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria gardoquioides
ANNOTATED PLASTOME
MW413436.1
151,763 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37941 75882 113822 151763 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 270 1328 1059 Locate
trnK-UUU gene − 1556 4137 2582 Locate
matK gene − 1847 3196 1350 Locate
rps16 gene − 5030 6206 1177 Locate
trnQ-UUC gene − 7308 7379 72 Locate
psbK gene + 7705 7890 186 Locate
psbI gene + 8284 8394 111 Locate
trnS-GCU gene − 8504 8591 88 Locate
trnG-UCC gene + 9302 10053 752 Locate
trnR-UCU gene + 10228 10299 72 Locate
atpA gene − 10397 11920 1524 Locate
atpF gene − 12013 13242 1230 Locate
atpH gene − 13609 13854 246 Locate
atpI gene − 14842 15585 744 Locate
rps2 gene − 15935 16645 711 Locate
rpoC2 gene − 16862 21067 4206 Locate
rpoC1 gene − 21222 24040 2819 Locate
rpoB gene − 24067 27279 3213 Locate
trnC-GCA gene + 28433 28503 71 Locate
petN gene + 29197 29286 90 Locate
psbM gene − 30301 30405 105 Locate
trnD-GUC gene − 30932 31005 74 Locate
trnY-GUA gene − 31119 31202 84 Locate
trnE-UUC gene − 31262 31334 73 Locate
trnT-GGU gene + 31910 31981 72 Locate
psbD gene + 33292 34353 1062 Locate
psbC gene + 34301 35722 1422 Locate
trnS-UCA gene − 35965 36057 93 Locate
psbZ gene + 36377 36565 189 Locate
trnG-GCC gene + 36824 36894 71 Locate
trnfM-CAU gene − 37042 37115 74 Locate
rps14 gene − 37265 37567 303 Locate
psaB gene − 37695 39899 2205 Locate
psaA gene − 39925 42177 2253 Locate
ycf3 gene − 42878 44795 1918 Locate
trnS-GGA gene + 45689 45775 87 Locate
rps4 gene − 46059 46664 606 Locate
trnT-UGU gene − 46998 47070 73 Locate
trnL-UAA gene + 47753 48324 572 Locate
trnF-GAA gene + 48629 48701 73 Locate
ndhJ gene − 49352 49828 477 Locate
ndhK gene − 49936 50613 678 Locate
ndhC gene − 50666 51028 363 Locate
trnV-UAC gene − 51482 52135 654 Locate
trnM-CAU gene + 52316 52388 73 Locate
atpE gene − 52597 52998 402 Locate
atpB gene − 52995 54491 1497 Locate
rbcL gene + 55258 56700 1443 Locate
accD gene + 57422 58900 1479 Locate
psaI gene + 59610 59720 111 Locate
ycf4 gene + 60154 60708 555 Locate
cemA gene + 61391 62050 660 Locate
petA gene + 62257 63219 963 Locate
psbJ gene − 64250 64372 123 Locate
psbL gene − 64506 64622 117 Locate
psbF gene − 64646 64765 120 Locate
psbE gene − 64780 65031 252 Locate
petL gene + 65937 66032 96 Locate
petG gene + 66208 66321 114 Locate
trnW-CCA gene − 66440 66513 74 Locate
trnP-UGG gene − 66673 66746 74 Locate
psaJ gene + 67019 67153 135 Locate
rpl33 gene + 67637 67837 201 Locate
rps18 gene + 68010 68315 306 Locate
rpl20 gene − 68549 68935 387 Locate
rps12 gene − 69722 69847 126 Locate
clpP gene − 69982 71922 1941 Locate
psbB gene + 72392 73918 1527 Locate
psbT gene + 74106 74213 108 Locate
psbN gene − 74274 74405 132 Locate
psbH gene + 74509 74730 222 Locate
petB gene + 74856 76224 1369 Locate
petD gene + 76413 77614 1202 Locate
rpoA gene − 77971 78795 825 Locate
rps11 gene − 78867 79283 417 Locate
rpl36 gene − 79386 79499 114 Locate
infA gene − 79595 79828 234 Locate
rps8 gene − 79948 80358 411 Locate
rpl14 gene − 80529 80897 369 Locate
rpl16 gene − 81025 82271 1247 Locate
rps3 gene − 82419 83081 663 Locate
rpl22 gene − 83083 83538 456 Locate
rps19 gene − 83598 83747 150 Locate
rpl2 gene − 83931 85413 1483 Locate
rpl23 gene − 85432 85713 282 Locate
trnI-CAU gene − 85873 85946 74 Locate
ycf2 gene + 86035 92844 6810 Locate
ycf15 gene + 92986 93183 198 Locate
trnL-CAA gene − 93444 93524 81 Locate
ndhB gene − 94067 96278 2212 Locate
rps7 gene − 96552 97019 468 Locate
rps12 gene − 97073 97863 791 Locate
trnV-GAC gene + 99418 99489 72 Locate
rrn16 gene + 99717 101207 1491 Locate
trnI-GAU gene + 101498 102516 1019 Locate
trnA-UGC gene + 102582 103461 880 Locate
rrn23 gene + 103631 106445 2815 Locate
rrn4.5 gene + 106544 106646 103 Locate
rrn5 gene + 106894 107014 121 Locate
trnR-ACC gene + 107249 107322 74 Locate
trnN-GUU gene + 107879 107950 72 Locate
ndhF gene − 109033 111273 2241 Locate
rpl32 gene + 111795 111971 177 Locate
trnL-UAG gene + 112398 112477 80 Locate
ccsA gene + 112562 113536 975 Locate
ndhD gene − 113771 115300 1530 Locate
psaC gene − 115401 115646 246 Locate
ndhE gene − 115902 116207 306 Locate
ndhG gene − 116418 116948 531 Locate
ndhI gene − 117306 117806 501 Locate
ndhA gene − 117887 119974 2088 Locate
ndhH gene − 119976 121157 1182 Locate
rps15 gene − 121254 121526 273 Locate
ycf1 gene − 121788 127319 5532 Locate
trnN-GUU gene + 127649 127720 72 Locate
trnR-ACC gene − 128277 128350 74 Locate
rrn5 gene − 128585 128705 121 Locate
rrn4.5 gene − 128953 129055 103 Locate
rrn23 gene − 129154 131968 2815 Locate
trnA-UGC gene − 132138 133017 880 Locate
trnI-GAU gene − 133083 134101 1019 Locate
rrn16 gene − 134392 135882 1491 Locate
trnV-GAC gene − 136110 136181 72 Locate
rps12 gene + 137736 138526 791 Locate
rps7 gene + 138580 139047 468 Locate
ndhB gene + 139321 141532 2212 Locate
trnL-CAA gene + 142075 142155 81 Locate
ycf15 gene − 142416 142613 198 Locate
ycf2 gene − 142755 149564 6810 Locate
trnI-CAU gene + 149653 149726 74 Locate
rpl23 gene + 149886 150167 282 Locate
rpl2 gene + 150186 151668 1483 Locate
Status Available
Accession MW413436.1
Length 151,763 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources