Scutellaria hintoniana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420959.1 · 1–74 bp · −
psbA · MW420959.1 · 268–1,326 bp · −
trnK-UUU · MW420959.1 · 1,563–4,146 bp · −
matK · MW420959.1 · 1,854–3,392 bp · −
rps16 · MW420959.1 · 5,066–6,218 bp · −
trnQ-UUC · MW420959.1 · 7,001–7,072 bp · −
trnS-GCU · MW420959.1 · 8,203–8,290 bp · −
atpA · MW420959.1 · 10,106–11,629 bp · −
atpF · MW420959.1 · 11,707–12,936 bp · −
atpH · MW420959.1 · 13,295–13,540 bp · −
atpI · MW420959.1 · 14,531–15,274 bp · −
rps2 · MW420959.1 · 15,642–16,352 bp · −
rpoC2 · MW420959.1 · 16,569–20,774 bp · −
rpoC1 · MW420959.1 · 20,929–23,766 bp · −
rpoB · MW420959.1 · 23,793–27,020 bp · −
psbM · MW420959.1 · 30,009–30,113 bp · −
trnD-GUC · MW420959.1 · 30,640–30,713 bp · −
trnY-GUA · MW420959.1 · 30,827–30,910 bp · −
trnE-UUC · MW420959.1 · 30,970–31,042 bp · −
trnS-UCA · MW420959.1 · 35,657–35,749 bp · −
trnfM-CAU · MW420959.1 · 36,740–36,813 bp · −
rps14 · MW420959.1 · 36,963–37,265 bp · −
psaB · MW420959.1 · 37,393–39,597 bp · −
psaA · MW420959.1 · 39,623–41,875 bp · −
ycf3 · MW420959.1 · 42,585–44,499 bp · −
rps4 · MW420959.1 · 45,771–46,376 bp · −
trnT-UGU · MW420959.1 · 46,731–46,803 bp · −
ndhJ · MW420959.1 · 49,034–49,510 bp · −
ndhK · MW420959.1 · 49,618–50,295 bp · −
ndhC · MW420959.1 · 50,348–50,710 bp · −
trnV-UAC · MW420959.1 · 51,165–51,827 bp · −
atpE · MW420959.1 · 52,274–52,675 bp · −
atpB · MW420959.1 · 52,672–54,168 bp · −
psbJ · MW420959.1 · 63,789–63,911 bp · −
psbL · MW420959.1 · 64,045–64,161 bp · −
psbF · MW420959.1 · 64,185–64,304 bp · −
psbE · MW420959.1 · 64,319–64,570 bp · −
trnW-CCA · MW420959.1 · 65,650–65,723 bp · −
trnP-UGG · MW420959.1 · 65,883–65,956 bp · −
rpl20 · MW420959.1 · 67,728–68,114 bp · −
rps12 · MW420959.1 · 68,908–69,033 bp · −
rps12 · MW420959.1 · 96,222–97,012 bp · −
clpP · MW420959.1 · 69,175–71,104 bp · −
psbN · MW420959.1 · 73,451–73,582 bp · −
rpoA · MW420959.1 · 76,965–77,978 bp · −
rps11 · MW420959.1 · 78,050–78,466 bp · −
rpl36 · MW420959.1 · 78,569–78,682 bp · −
infA · MW420959.1 · 78,784–79,017 bp · −
rps8 · MW420959.1 · 79,137–79,547 bp · −
rpl14 · MW420959.1 · 79,712–80,080 bp · −
rpl16 · MW420959.1 · 80,208–81,439 bp · −
rps3 · MW420959.1 · 81,587–82,255 bp · −
rpl22 · MW420959.1 · 82,257–82,712 bp · −
rps19 · MW420959.1 · 82,772–83,050 bp · −
rpl2 · MW420959.1 · 83,106–84,588 bp · −
rpl23 · MW420959.1 · 84,607–84,888 bp · −
trnI-CAU · MW420959.1 · 85,048–85,121 bp · −
trnL-CAA · MW420959.1 · 92,592–92,672 bp · −
ndhB · MW420959.1 · 93,215–95,426 bp · −
rps7 · MW420959.1 · 95,701–96,168 bp · −
ndhF · MW420959.1 · 108,220–110,460 bp · −
ndhD · MW420959.1 · 112,972–114,492 bp · −
psaC · MW420959.1 · 114,600–114,845 bp · −
ndhE · MW420959.1 · 115,101–115,406 bp · −
ndhG · MW420959.1 · 115,628–116,158 bp · −
ndhI · MW420959.1 · 116,522–117,022 bp · −
ndhA · MW420959.1 · 117,103–119,200 bp · −
ndhH · MW420959.1 · 119,202–120,383 bp · −
rps15 · MW420959.1 · 120,480–120,752 bp · −
ycf1 · MW420959.1 · 121,029–126,572 bp · −
trnR-ACC · MW420959.1 · 127,530–127,603 bp · −
rrn5 · MW420959.1 · 127,838–127,958 bp · −
rrn4.5 · MW420959.1 · 128,206–128,308 bp · −
rrn23 · MW420959.1 · 128,407–131,219 bp · −
trnA-UGC · MW420959.1 · 131,389–132,277 bp · −
trnI-GAU · MW420959.1 · 132,349–133,367 bp · −
rrn16 · MW420959.1 · 133,666–135,156 bp · −
trnV-GAC · MW420959.1 · 135,384–135,455 bp · −
ycf15 · MW420959.1 · 141,708–141,905 bp · −
ycf2 · MW420959.1 · 142,047–148,829 bp · −
psbK · MW420959.1 · 7,398–7,583 bp · +
psbI · MW420959.1 · 7,974–8,084 bp · +
trnG-UCC · MW420959.1 · 8,999–9,755 bp · +
trnR-UCU · MW420959.1 · 9,938–10,009 bp · +
trnC-GCA · MW420959.1 · 28,148–28,218 bp · +
petN · MW420959.1 · 28,928–29,017 bp · +
trnT-GGU · MW420959.1 · 31,618–31,689 bp · +
psbD · MW420959.1 · 32,991–34,052 bp · +
psbC · MW420959.1 · 34,000–35,421 bp · +
psbZ · MW420959.1 · 36,076–36,264 bp · +
trnG-GCC · MW420959.1 · 36,523–36,593 bp · +
trnS-GGA · MW420959.1 · 45,395–45,481 bp · +
trnL-UAA · MW420959.1 · 47,423–47,981 bp · +
trnF-GAA · MW420959.1 · 48,311–48,383 bp · +
trnM-CAU · MW420959.1 · 52,008–52,080 bp · +
rbcL · MW420959.1 · 54,944–56,386 bp · +
accD · MW420959.1 · 57,099–58,577 bp · +
psaI · MW420959.1 · 59,285–59,395 bp · +
ycf4 · MW420959.1 · 59,821–60,375 bp · +
cemA · MW420959.1 · 61,057–61,716 bp · +
petA · MW420959.1 · 61,923–62,885 bp · +
petL · MW420959.1 · 65,148–65,243 bp · +
petG · MW420959.1 · 65,418–65,531 bp · +
psaJ · MW420959.1 · 66,228–66,362 bp · +
rpl33 · MW420959.1 · 66,830–67,030 bp · +
rps18 · MW420959.1 · 67,185–67,490 bp · +
rps12 · MW420959.1 · 137,027–137,817 bp · +
psbB · MW420959.1 · 71,564–73,090 bp · +
psbT · MW420959.1 · 73,283–73,390 bp · +
psbH · MW420959.1 · 73,686–73,907 bp · +
petB · MW420959.1 · 74,029–75,396 bp · +
petD · MW420959.1 · 75,585–76,802 bp · +
ycf2 · MW420959.1 · 85,210–91,992 bp · +
ycf15 · MW420959.1 · 92,134–92,331 bp · +
trnV-GAC · MW420959.1 · 98,584–98,655 bp · +
rrn16 · MW420959.1 · 98,883–100,373 bp · +
trnI-GAU · MW420959.1 · 100,672–101,690 bp · +
trnA-UGC · MW420959.1 · 101,762–102,650 bp · +
rrn23 · MW420959.1 · 102,820–105,632 bp · +
rrn4.5 · MW420959.1 · 105,731–105,833 bp · +
rrn5 · MW420959.1 · 106,081–106,201 bp · +
trnR-ACC · MW420959.1 · 106,436–106,509 bp · +
trnN-GUU · MW420959.1 · 107,066–107,137 bp · +
rpl32 · MW420959.1 · 110,976–111,152 bp · +
trnL-UAG · MW420959.1 · 111,584–111,663 bp · +
ccsA · MW420959.1 · 111,762–112,736 bp · +
trnN-GUU · MW420959.1 · 126,902–126,973 bp · +
rps7 · MW420959.1 · 137,871–138,338 bp · +
ndhB · MW420959.1 · 138,613–140,824 bp · +
trnL-CAA · MW420959.1 · 141,367–141,447 bp · +
trnI-CAU · MW420959.1 · 148,918–148,991 bp · +
rpl23 · MW420959.1 · 149,151–149,432 bp · +
rpl2 · MW420959.1 · 149,451–150,933 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria hintoniana
ANNOTATED PLASTOME
MW420959.1
151,030 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37758 75515 113272 151030 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 268 1326 1059 Locate
trnK-UUU gene − 1563 4146 2584 Locate
matK gene − 1854 3392 1539 Locate
rps16 gene − 5066 6218 1153 Locate
trnQ-UUC gene − 7001 7072 72 Locate
psbK gene + 7398 7583 186 Locate
psbI gene + 7974 8084 111 Locate
trnS-GCU gene − 8203 8290 88 Locate
trnG-UCC gene + 8999 9755 757 Locate
trnR-UCU gene + 9938 10009 72 Locate
atpA gene − 10106 11629 1524 Locate
atpF gene − 11707 12936 1230 Locate
atpH gene − 13295 13540 246 Locate
atpI gene − 14531 15274 744 Locate
rps2 gene − 15642 16352 711 Locate
rpoC2 gene − 16569 20774 4206 Locate
rpoC1 gene − 20929 23766 2838 Locate
rpoB gene − 23793 27020 3228 Locate
trnC-GCA gene + 28148 28218 71 Locate
petN gene + 28928 29017 90 Locate
psbM gene − 30009 30113 105 Locate
trnD-GUC gene − 30640 30713 74 Locate
trnY-GUA gene − 30827 30910 84 Locate
trnE-UUC gene − 30970 31042 73 Locate
trnT-GGU gene + 31618 31689 72 Locate
psbD gene + 32991 34052 1062 Locate
psbC gene + 34000 35421 1422 Locate
trnS-UCA gene − 35657 35749 93 Locate
psbZ gene + 36076 36264 189 Locate
trnG-GCC gene + 36523 36593 71 Locate
trnfM-CAU gene − 36740 36813 74 Locate
rps14 gene − 36963 37265 303 Locate
psaB gene − 37393 39597 2205 Locate
psaA gene − 39623 41875 2253 Locate
ycf3 gene − 42585 44499 1915 Locate
trnS-GGA gene + 45395 45481 87 Locate
rps4 gene − 45771 46376 606 Locate
trnT-UGU gene − 46731 46803 73 Locate
trnL-UAA gene + 47423 47981 559 Locate
trnF-GAA gene + 48311 48383 73 Locate
ndhJ gene − 49034 49510 477 Locate
ndhK gene − 49618 50295 678 Locate
ndhC gene − 50348 50710 363 Locate
trnV-UAC gene − 51165 51827 663 Locate
trnM-CAU gene + 52008 52080 73 Locate
atpE gene − 52274 52675 402 Locate
atpB gene − 52672 54168 1497 Locate
rbcL gene + 54944 56386 1443 Locate
accD gene + 57099 58577 1479 Locate
psaI gene + 59285 59395 111 Locate
ycf4 gene + 59821 60375 555 Locate
cemA gene + 61057 61716 660 Locate
petA gene + 61923 62885 963 Locate
psbJ gene − 63789 63911 123 Locate
psbL gene − 64045 64161 117 Locate
psbF gene − 64185 64304 120 Locate
psbE gene − 64319 64570 252 Locate
petL gene + 65148 65243 96 Locate
petG gene + 65418 65531 114 Locate
trnW-CCA gene − 65650 65723 74 Locate
trnP-UGG gene − 65883 65956 74 Locate
psaJ gene + 66228 66362 135 Locate
rpl33 gene + 66830 67030 201 Locate
rps18 gene + 67185 67490 306 Locate
rpl20 gene − 67728 68114 387 Locate
rps12 gene − 68908 69033 126 Locate
clpP gene − 69175 71104 1930 Locate
psbB gene + 71564 73090 1527 Locate
psbT gene + 73283 73390 108 Locate
psbN gene − 73451 73582 132 Locate
psbH gene + 73686 73907 222 Locate
petB gene + 74029 75396 1368 Locate
petD gene + 75585 76802 1218 Locate
rpoA gene − 76965 77978 1014 Locate
rps11 gene − 78050 78466 417 Locate
rpl36 gene − 78569 78682 114 Locate
infA gene − 78784 79017 234 Locate
rps8 gene − 79137 79547 411 Locate
rpl14 gene − 79712 80080 369 Locate
rpl16 gene − 80208 81439 1232 Locate
rps3 gene − 81587 82255 669 Locate
rpl22 gene − 82257 82712 456 Locate
rps19 gene − 82772 83050 279 Locate
rpl2 gene − 83106 84588 1483 Locate
rpl23 gene − 84607 84888 282 Locate
trnI-CAU gene − 85048 85121 74 Locate
ycf2 gene + 85210 91992 6783 Locate
ycf15 gene + 92134 92331 198 Locate
trnL-CAA gene − 92592 92672 81 Locate
ndhB gene − 93215 95426 2212 Locate
rps7 gene − 95701 96168 468 Locate
rps12 gene − 96222 97012 791 Locate
trnV-GAC gene + 98584 98655 72 Locate
rrn16 gene + 98883 100373 1491 Locate
trnI-GAU gene + 100672 101690 1019 Locate
trnA-UGC gene + 101762 102650 889 Locate
rrn23 gene + 102820 105632 2813 Locate
rrn4.5 gene + 105731 105833 103 Locate
rrn5 gene + 106081 106201 121 Locate
trnR-ACC gene + 106436 106509 74 Locate
trnN-GUU gene + 107066 107137 72 Locate
ndhF gene − 108220 110460 2241 Locate
rpl32 gene + 110976 111152 177 Locate
trnL-UAG gene + 111584 111663 80 Locate
ccsA gene + 111762 112736 975 Locate
ndhD gene − 112972 114492 1521 Locate
psaC gene − 114600 114845 246 Locate
ndhE gene − 115101 115406 306 Locate
ndhG gene − 115628 116158 531 Locate
ndhI gene − 116522 117022 501 Locate
ndhA gene − 117103 119200 2098 Locate
ndhH gene − 119202 120383 1182 Locate
rps15 gene − 120480 120752 273 Locate
ycf1 gene − 121029 126572 5544 Locate
trnN-GUU gene + 126902 126973 72 Locate
trnR-ACC gene − 127530 127603 74 Locate
rrn5 gene − 127838 127958 121 Locate
rrn4.5 gene − 128206 128308 103 Locate
rrn23 gene − 128407 131219 2813 Locate
trnA-UGC gene − 131389 132277 889 Locate
trnI-GAU gene − 132349 133367 1019 Locate
rrn16 gene − 133666 135156 1491 Locate
trnV-GAC gene − 135384 135455 72 Locate
rps12 gene + 137027 137817 791 Locate
rps7 gene + 137871 138338 468 Locate
ndhB gene + 138613 140824 2212 Locate
trnL-CAA gene + 141367 141447 81 Locate
ycf15 gene − 141708 141905 198 Locate
ycf2 gene − 142047 148829 6783 Locate
trnI-CAU gene + 148918 148991 74 Locate
rpl23 gene + 149151 149432 282 Locate
rpl2 gene + 149451 150933 1483 Locate
Status Available
Accession MW420959.1
Length 151,030 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources