Scutellaria immaculata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420944.1 · 4–77 bp · −
psbA · MW420944.1 · 375–1,433 bp · −
trnK-UUU · MW420944.1 · 1,679–4,252 bp · −
matK · MW420944.1 · 1,965–3,491 bp · −
rps16 · MW420944.1 · 5,157–6,315 bp · −
trnQ-UUC · MW420944.1 · 7,428–7,499 bp · −
trnS-GCU · MW420944.1 · 8,624–8,711 bp · −
atpA · MW420944.1 · 10,373–11,896 bp · −
atpF · MW420944.1 · 11,978–13,207 bp · −
atpH · MW420944.1 · 13,572–13,817 bp · −
atpI · MW420944.1 · 14,805–15,548 bp · −
rps2 · MW420944.1 · 15,894–16,604 bp · −
rpoC2 · MW420944.1 · 16,820–21,025 bp · −
rpoC1 · MW420944.1 · 21,180–24,014 bp · −
rpoB · MW420944.1 · 24,041–27,253 bp · −
psbM · MW420944.1 · 30,339–30,443 bp · −
trnD-GUC · MW420944.1 · 30,969–31,042 bp · −
trnY-GUA · MW420944.1 · 31,156–31,239 bp · −
trnE-UUC · MW420944.1 · 31,299–31,371 bp · −
trnS-UCA · MW420944.1 · 35,985–36,077 bp · −
trnfM-CAU · MW420944.1 · 37,088–37,161 bp · −
rps14 · MW420944.1 · 37,316–37,618 bp · −
psaB · MW420944.1 · 37,747–39,951 bp · −
psaA · MW420944.1 · 39,977–42,229 bp · −
ycf3 · MW420944.1 · 42,929–44,848 bp · −
rps4 · MW420944.1 · 46,098–46,703 bp · −
trnT-UGU · MW420944.1 · 47,044–47,116 bp · −
ndhJ · MW420944.1 · 49,390–49,866 bp · −
ndhK · MW420944.1 · 49,975–50,652 bp · −
ndhC · MW420944.1 · 50,706–51,068 bp · −
trnV-UAC · MW420944.1 · 52,054–52,706 bp · −
atpE · MW420944.1 · 53,161–53,562 bp · −
atpB · MW420944.1 · 53,559–55,055 bp · −
psbJ · MW420944.1 · 64,794–64,916 bp · −
psbL · MW420944.1 · 65,050–65,166 bp · −
psbF · MW420944.1 · 65,190–65,309 bp · −
psbE · MW420944.1 · 65,324–65,575 bp · −
trnW-CCA · MW420944.1 · 66,956–67,029 bp · −
trnP-UGG · MW420944.1 · 67,199–67,272 bp · −
rpl20 · MW420944.1 · 69,072–69,458 bp · −
rps12 · MW420944.1 · 70,241–70,366 bp · −
rps12 · MW420944.1 · 97,513–98,303 bp · −
clpP · MW420944.1 · 70,509–72,435 bp · −
psbN · MW420944.1 · 74,779–74,910 bp · −
rpoA · MW420944.1 · 78,449–79,270 bp · −
rps11 · MW420944.1 · 79,342–79,758 bp · −
rpl36 · MW420944.1 · 79,860–79,973 bp · −
infA · MW420944.1 · 80,068–80,301 bp · −
rps8 · MW420944.1 · 80,424–80,834 bp · −
rpl14 · MW420944.1 · 80,985–81,353 bp · −
rpl16 · MW420944.1 · 81,480–82,713 bp · −
rps3 · MW420944.1 · 82,869–83,531 bp · −
rpl22 · MW420944.1 · 83,533–83,988 bp · −
rps19 · MW420944.1 · 84,048–84,326 bp · −
rpl2 · MW420944.1 · 84,381–85,862 bp · −
rpl23 · MW420944.1 · 85,881–86,162 bp · −
trnI-CAU · MW420944.1 · 86,322–86,395 bp · −
trnL-CAA · MW420944.1 · 93,883–93,963 bp · −
ndhB · MW420944.1 · 94,506–96,717 bp · −
rps7 · MW420944.1 · 96,992–97,459 bp · −
ndhF · MW420944.1 · 109,454–111,715 bp · −
ndhD · MW420944.1 · 114,045–115,574 bp · −
psaC · MW420944.1 · 115,675–115,920 bp · −
ndhE · MW420944.1 · 116,176–116,481 bp · −
ndhG · MW420944.1 · 116,698–117,228 bp · −
ndhI · MW420944.1 · 117,594–118,094 bp · −
ndhA · MW420944.1 · 118,175–120,287 bp · −
ndhH · MW420944.1 · 120,289–121,470 bp · −
rps15 · MW420944.1 · 121,567–121,839 bp · −
ycf1 · MW420944.1 · 122,037–127,562 bp · −
trnR-ACC · MW420944.1 · 128,512–128,585 bp · −
rrn5 · MW420944.1 · 128,820–128,940 bp · −
rrn4.5 · MW420944.1 · 129,188–129,290 bp · −
rrn23 · MW420944.1 · 129,389–132,200 bp · −
trnA-UGC · MW420944.1 · 132,363–133,242 bp · −
trnI-GAU · MW420944.1 · 133,308–134,327 bp · −
rrn16 · MW420944.1 · 134,626–136,116 bp · −
trnV-GAC · MW420944.1 · 136,343–136,414 bp · −
ycf15 · MW420944.1 · 142,666–142,863 bp · −
ycf2 · MW420944.1 · 143,005–149,805 bp · −
psbK · MW420944.1 · 7,824–8,009 bp · +
psbI · MW420944.1 · 8,397–8,507 bp · +
trnG-UCC · MW420944.1 · 9,283–10,030 bp · +
trnR-UCU · MW420944.1 · 10,205–10,276 bp · +
trnC-GCA · MW420944.1 · 28,414–28,484 bp · +
petN · MW420944.1 · 29,200–29,289 bp · +
trnT-GGU · MW420944.1 · 31,947–32,018 bp · +
psbD · MW420944.1 · 33,318–34,379 bp · +
psbC · MW420944.1 · 34,327–35,748 bp · +
psbZ · MW420944.1 · 36,393–36,581 bp · +
trnG-GCC · MW420944.1 · 36,865–36,935 bp · +
trnS-GGA · MW420944.1 · 45,737–45,823 bp · +
trnL-UAA · MW420944.1 · 47,801–48,361 bp · +
trnF-GAA · MW420944.1 · 48,669–48,741 bp · +
trnM-CAU · MW420944.1 · 52,895–52,967 bp · +
rbcL · MW420944.1 · 55,828–57,270 bp · +
accD · MW420944.1 · 57,995–59,473 bp · +
psaI · MW420944.1 · 60,180–60,290 bp · +
ycf4 · MW420944.1 · 60,724–61,278 bp · +
cemA · MW420944.1 · 61,967–62,626 bp · +
petA · MW420944.1 · 62,833–63,795 bp · +
petL · MW420944.1 · 66,454–66,549 bp · +
petG · MW420944.1 · 66,724–66,837 bp · +
psaJ · MW420944.1 · 67,544–67,678 bp · +
rpl33 · MW420944.1 · 68,156–68,356 bp · +
rps18 · MW420944.1 · 68,531–68,836 bp · +
rps12 · MW420944.1 · 137,986–138,776 bp · +
psbB · MW420944.1 · 72,894–74,420 bp · +
psbT · MW420944.1 · 74,611–74,718 bp · +
psbH · MW420944.1 · 75,014–75,235 bp · +
petB · MW420944.1 · 75,360–76,728 bp · +
petD · MW420944.1 · 76,911–78,116 bp · +
ycf2 · MW420944.1 · 86,484–93,284 bp · +
ycf15 · MW420944.1 · 93,426–93,623 bp · +
trnV-GAC · MW420944.1 · 99,875–99,946 bp · +
rrn16 · MW420944.1 · 100,173–101,663 bp · +
trnI-GAU · MW420944.1 · 101,962–102,981 bp · +
trnA-UGC · MW420944.1 · 103,047–103,926 bp · +
rrn23 · MW420944.1 · 104,089–106,900 bp · +
rrn4.5 · MW420944.1 · 106,999–107,101 bp · +
rrn5 · MW420944.1 · 107,349–107,469 bp · +
trnR-ACC · MW420944.1 · 107,704–107,777 bp · +
trnN-GUU · MW420944.1 · 108,326–108,397 bp · +
rpl32 · MW420944.1 · 112,043–112,219 bp · +
trnL-UAG · MW420944.1 · 112,667–112,746 bp · +
ccsA · MW420944.1 · 112,831–113,805 bp · +
trnN-GUU · MW420944.1 · 127,892–127,963 bp · +
rps7 · MW420944.1 · 138,830–139,297 bp · +
ndhB · MW420944.1 · 139,572–141,783 bp · +
trnL-CAA · MW420944.1 · 142,326–142,406 bp · +
trnI-CAU · MW420944.1 · 149,894–149,967 bp · +
rpl23 · MW420944.1 · 150,127–150,408 bp · +
rpl2 · MW420944.1 · 150,427–151,908 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria immaculata
ANNOTATED PLASTOME
MW420944.1
152,008 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38002 76004 114006 152008 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1679 4252 2574 Locate
matK gene − 1965 3491 1527 Locate
rps16 gene − 5157 6315 1159 Locate
trnQ-UUC gene − 7428 7499 72 Locate
psbK gene + 7824 8009 186 Locate
psbI gene + 8397 8507 111 Locate
trnS-GCU gene − 8624 8711 88 Locate
trnG-UCC gene + 9283 10030 748 Locate
trnR-UCU gene + 10205 10276 72 Locate
atpA gene − 10373 11896 1524 Locate
atpF gene − 11978 13207 1230 Locate
atpH gene − 13572 13817 246 Locate
atpI gene − 14805 15548 744 Locate
rps2 gene − 15894 16604 711 Locate
rpoC2 gene − 16820 21025 4206 Locate
rpoC1 gene − 21180 24014 2835 Locate
rpoB gene − 24041 27253 3213 Locate
trnC-GCA gene + 28414 28484 71 Locate
petN gene + 29200 29289 90 Locate
psbM gene − 30339 30443 105 Locate
trnD-GUC gene − 30969 31042 74 Locate
trnY-GUA gene − 31156 31239 84 Locate
trnE-UUC gene − 31299 31371 73 Locate
trnT-GGU gene + 31947 32018 72 Locate
psbD gene + 33318 34379 1062 Locate
psbC gene + 34327 35748 1422 Locate
trnS-UCA gene − 35985 36077 93 Locate
psbZ gene + 36393 36581 189 Locate
trnG-GCC gene + 36865 36935 71 Locate
trnfM-CAU gene − 37088 37161 74 Locate
rps14 gene − 37316 37618 303 Locate
psaB gene − 37747 39951 2205 Locate
psaA gene − 39977 42229 2253 Locate
ycf3 gene − 42929 44848 1920 Locate
trnS-GGA gene + 45737 45823 87 Locate
rps4 gene − 46098 46703 606 Locate
trnT-UGU gene − 47044 47116 73 Locate
trnL-UAA gene + 47801 48361 561 Locate
trnF-GAA gene + 48669 48741 73 Locate
ndhJ gene − 49390 49866 477 Locate
ndhK gene − 49975 50652 678 Locate
ndhC gene − 50706 51068 363 Locate
trnV-UAC gene − 52054 52706 653 Locate
trnM-CAU gene + 52895 52967 73 Locate
atpE gene − 53161 53562 402 Locate
atpB gene − 53559 55055 1497 Locate
rbcL gene + 55828 57270 1443 Locate
accD gene + 57995 59473 1479 Locate
psaI gene + 60180 60290 111 Locate
ycf4 gene + 60724 61278 555 Locate
cemA gene + 61967 62626 660 Locate
petA gene + 62833 63795 963 Locate
psbJ gene − 64794 64916 123 Locate
psbL gene − 65050 65166 117 Locate
psbF gene − 65190 65309 120 Locate
psbE gene − 65324 65575 252 Locate
petL gene + 66454 66549 96 Locate
petG gene + 66724 66837 114 Locate
trnW-CCA gene − 66956 67029 74 Locate
trnP-UGG gene − 67199 67272 74 Locate
psaJ gene + 67544 67678 135 Locate
rpl33 gene + 68156 68356 201 Locate
rps18 gene + 68531 68836 306 Locate
rpl20 gene − 69072 69458 387 Locate
rps12 gene − 70241 70366 126 Locate
clpP gene − 70509 72435 1927 Locate
psbB gene + 72894 74420 1527 Locate
psbT gene + 74611 74718 108 Locate
psbN gene − 74779 74910 132 Locate
psbH gene + 75014 75235 222 Locate
petB gene + 75360 76728 1369 Locate
petD gene + 76911 78116 1206 Locate
rpoA gene − 78449 79270 822 Locate
rps11 gene − 79342 79758 417 Locate
rpl36 gene − 79860 79973 114 Locate
infA gene − 80068 80301 234 Locate
rps8 gene − 80424 80834 411 Locate
rpl14 gene − 80985 81353 369 Locate
rpl16 gene − 81480 82713 1234 Locate
rps3 gene − 82869 83531 663 Locate
rpl22 gene − 83533 83988 456 Locate
rps19 gene − 84048 84326 279 Locate
rpl2 gene − 84381 85862 1482 Locate
rpl23 gene − 85881 86162 282 Locate
trnI-CAU gene − 86322 86395 74 Locate
ycf2 gene + 86484 93284 6801 Locate
ycf15 gene + 93426 93623 198 Locate
trnL-CAA gene − 93883 93963 81 Locate
ndhB gene − 94506 96717 2212 Locate
rps7 gene − 96992 97459 468 Locate
rps12 gene − 97513 98303 791 Locate
trnV-GAC gene + 99875 99946 72 Locate
rrn16 gene + 100173 101663 1491 Locate
trnI-GAU gene + 101962 102981 1020 Locate
trnA-UGC gene + 103047 103926 880 Locate
rrn23 gene + 104089 106900 2812 Locate
rrn4.5 gene + 106999 107101 103 Locate
rrn5 gene + 107349 107469 121 Locate
trnR-ACC gene + 107704 107777 74 Locate
trnN-GUU gene + 108326 108397 72 Locate
ndhF gene − 109454 111715 2262 Locate
rpl32 gene + 112043 112219 177 Locate
trnL-UAG gene + 112667 112746 80 Locate
ccsA gene + 112831 113805 975 Locate
ndhD gene − 114045 115574 1530 Locate
psaC gene − 115675 115920 246 Locate
ndhE gene − 116176 116481 306 Locate
ndhG gene − 116698 117228 531 Locate
ndhI gene − 117594 118094 501 Locate
ndhA gene − 118175 120287 2113 Locate
ndhH gene − 120289 121470 1182 Locate
rps15 gene − 121567 121839 273 Locate
ycf1 gene − 122037 127562 5526 Locate
trnN-GUU gene + 127892 127963 72 Locate
trnR-ACC gene − 128512 128585 74 Locate
rrn5 gene − 128820 128940 121 Locate
rrn4.5 gene − 129188 129290 103 Locate
rrn23 gene − 129389 132200 2812 Locate
trnA-UGC gene − 132363 133242 880 Locate
trnI-GAU gene − 133308 134327 1020 Locate
rrn16 gene − 134626 136116 1491 Locate
trnV-GAC gene − 136343 136414 72 Locate
rps12 gene + 137986 138776 791 Locate
rps7 gene + 138830 139297 468 Locate
ndhB gene + 139572 141783 2212 Locate
trnL-CAA gene + 142326 142406 81 Locate
ycf15 gene − 142666 142863 198 Locate
ycf2 gene − 143005 149805 6801 Locate
trnI-CAU gene + 149894 149967 74 Locate
rpl23 gene + 150127 150408 282 Locate
rpl2 gene + 150427 151908 1482 Locate
Status Available
Accession MW420944.1
Length 152,008 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources