Scutellaria indica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_072111.1 · 4–77 bp · −
psbA · NC_072111.1 · 376–1,434 bp · −
trnK-UUU · NC_072111.1 · 1,672–4,252 bp · −
matK · NC_072111.1 · 1,963–3,309 bp · −
rps16 · NC_072111.1 · 5,129–6,298 bp · −
trnS-GCU · NC_072111.1 · 8,513–8,600 bp · −
atpA · NC_072111.1 · 10,384–11,907 bp · −
atpF · NC_072111.1 · 11,991–13,218 bp · −
atpH · NC_072111.1 · 13,575–13,820 bp · −
atpI · NC_072111.1 · 14,817–15,560 bp · −
rps2 · NC_072111.1 · 15,909–16,619 bp · −
rpoC2 · NC_072111.1 · 16,836–21,041 bp · −
rpoC1 · NC_072111.1 · 21,196–24,024 bp · −
rpoB · NC_072111.1 · 24,051–27,263 bp · −
psbM · NC_072111.1 · 30,305–30,409 bp · −
trnD-GUC · NC_072111.1 · 30,936–31,009 bp · −
trnY-GUA · NC_072111.1 · 31,123–31,206 bp · −
trnE-UUC · NC_072111.1 · 31,266–31,338 bp · −
rps14 · NC_072111.1 · 37,175–37,477 bp · −
psaB · NC_072111.1 · 37,605–39,809 bp · −
psaA · NC_072111.1 · 39,835–42,087 bp · −
ycf3 · NC_072111.1 · 42,759–44,680 bp · −
rps4 · NC_072111.1 · 45,930–46,535 bp · −
trnT-UGU · NC_072111.1 · 46,876–46,948 bp · −
ndhJ · NC_072111.1 · 49,220–49,696 bp · −
ndhK · NC_072111.1 · 49,804–50,481 bp · −
ndhC · NC_072111.1 · 50,534–50,896 bp · −
trnV-UAC · NC_072111.1 · 51,752–52,405 bp · −
atpE · NC_072111.1 · 52,874–53,275 bp · −
atpB · NC_072111.1 · 53,272–54,759 bp · −
psbL · NC_072111.1 · 64,635–64,751 bp · −
psbF · NC_072111.1 · 64,775–64,894 bp · −
psbE · NC_072111.1 · 64,909–65,160 bp · −
trnW-CCA · NC_072111.1 · 66,572–66,645 bp · −
trnP-UGG · NC_072111.1 · 66,815–66,888 bp · −
rpl20 · NC_072111.1 · 68,686–69,072 bp · −
rps12 · NC_072111.1 · 69,872–69,985 bp · −
rps12 · NC_072111.1 · 97,787–98,029 bp · −
clpP · NC_072111.1 · 70,128–72,060 bp · −
psbN · NC_072111.1 · 74,427–74,558 bp · −
rpoA · NC_072111.1 · 77,928–78,941 bp · −
rps11 · NC_072111.1 · 79,013–79,429 bp · −
infA · NC_072111.1 · 79,740–79,973 bp · −
rps8 · NC_072111.1 · 80,094–80,504 bp · −
rpl14 · NC_072111.1 · 80,673–81,041 bp · −
rpl16 · NC_072111.1 · 81,168–82,431 bp · −
rps3 · NC_072111.1 · 82,586–83,248 bp · −
rpl22 · NC_072111.1 · 83,250–83,705 bp · −
rps19 · NC_072111.1 · 83,765–84,043 bp · −
rpl2 · NC_072111.1 · 84,098–85,580 bp · −
rpl23 · NC_072111.1 · 85,599–85,880 bp · −
trnI-GAU · NC_072111.1 · 86,040–86,113 bp · −
trnL-CAA · NC_072111.1 · 93,606–93,686 bp · −
ndhB · NC_072111.1 · 94,229–96,440 bp · −
rps7 · NC_072111.1 · 96,715–97,182 bp · −
ndhF · NC_072111.1 · 109,205–111,445 bp · −
ndhD · NC_072111.1 · 113,971–115,476 bp · −
psaC · NC_072111.1 · 115,593–115,838 bp · −
ndhE · NC_072111.1 · 116,095–116,400 bp · −
ndhG · NC_072111.1 · 116,631–117,161 bp · −
ndhI · NC_072111.1 · 117,526–118,026 bp · −
ndhA · NC_072111.1 · 118,107–120,199 bp · −
ndhH · NC_072111.1 · 120,201–121,382 bp · −
rps15 · NC_072111.1 · 121,485–121,757 bp · −
ycf1 · NC_072111.1 · 122,024–127,549 bp · −
trnN-GUU · NC_072111.1 · 127,879–127,950 bp · −
rrn5S · NC_072111.1 · 128,805–128,925 bp · −
rrn4.5S · NC_072111.1 · 129,173–129,275 bp · −
rrn23S · NC_072111.1 · 129,374–132,186 bp · −
trnA-UGC · NC_072111.1 · 132,356–133,238 bp · −
trnI-GAU · NC_072111.1 · 133,304–134,323 bp · −
rrn16S · NC_072111.1 · 134,622–136,112 bp · −
trnV-GAC · NC_072111.1 · 136,340–136,411 bp · −
ycf15 · NC_072111.1 · 142,657–142,854 bp · −
ycf2 · NC_072111.1 · 142,996–149,805 bp · −
psbK · NC_072111.1 · 7,714–7,899 bp · +
psbI · NC_072111.1 · 8,292–8,402 bp · +
trnR-UCU · NC_072111.1 · 10,216–10,287 bp · +
trnC-GCA · NC_072111.1 · 28,428–28,498 bp · +
petN · NC_072111.1 · 29,210–29,299 bp · +
trnT-GGU · NC_072111.1 · 31,811–31,882 bp · +
psbD · NC_072111.1 · 33,190–34,251 bp · +
psbC · NC_072111.1 · 34,199–35,620 bp · +
psbZ · NC_072111.1 · 36,267–36,455 bp · +
trnG-GCC · NC_072111.1 · 36,727–36,797 bp · +
trnS-GGA · NC_072111.1 · 45,558–45,644 bp · +
trnL-UAA · NC_072111.1 · 47,633–48,193 bp · +
trnF-GAA · NC_072111.1 · 48,499–48,571 bp · +
trnM-CAU · NC_072111.1 · 52,586–52,658 bp · +
rbcL · NC_072111.1 · 55,532–56,974 bp · +
accD · NC_072111.1 · 57,708–59,174 bp · +
psaI · NC_072111.1 · 59,749–59,859 bp · +
ycf4 · NC_072111.1 · 60,285–60,839 bp · +
cemA · NC_072111.1 · 61,577–62,176 bp · +
petA · NC_072111.1 · 62,383–63,345 bp · +
petL · NC_072111.1 · 66,069–66,164 bp · +
petG · NC_072111.1 · 66,340–66,453 bp · +
psaJ · NC_072111.1 · 67,161–67,295 bp · +
rpl33 · NC_072111.1 · 67,769–67,969 bp · +
rps18 · NC_072111.1 · 68,144–68,449 bp · +
rps12 · NC_072111.1 · 137,978–138,220 bp · +
psbB · NC_072111.1 · 72,527–74,053 bp · +
psbT · NC_072111.1 · 74,245–74,346 bp · +
psbH · NC_072111.1 · 74,662–74,883 bp · +
petB · NC_072111.1 · 75,008–76,375 bp · +
petD · NC_072111.1 · 76,564–77,765 bp · +
ycf2 · NC_072111.1 · 86,202–93,011 bp · +
ycf15 · NC_072111.1 · 93,153–93,350 bp · +
trnV-GAC · NC_072111.1 · 99,596–99,667 bp · +
rrn16S · NC_072111.1 · 99,895–101,385 bp · +
trnI-GAU · NC_072111.1 · 101,684–102,703 bp · +
trnA-UGC · NC_072111.1 · 102,769–103,651 bp · +
rrn23S · NC_072111.1 · 103,821–106,633 bp · +
rrn4.5S · NC_072111.1 · 106,732–106,834 bp · +
rrn5S · NC_072111.1 · 107,082–107,202 bp · +
trnN-GUU · NC_072111.1 · 108,057–108,128 bp · +
rpl32 · NC_072111.1 · 111,966–112,142 bp · +
trnL-UAG · NC_072111.1 · 112,588–112,667 bp · +
ccsA · NC_072111.1 · 112,764–113,738 bp · +
rps7 · NC_072111.1 · 138,825–139,292 bp · +
ndhB · NC_072111.1 · 139,567–141,778 bp · +
trnL-CAA · NC_072111.1 · 142,321–142,401 bp · +
trnI-GAU · NC_072111.1 · 149,894–149,967 bp · +
rpl23 · NC_072111.1 · 150,127–150,408 bp · +
rpl2 · NC_072111.1 · 150,427–151,909 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria indica
ANNOTATED PLASTOME
NC_072111.1
152,003 bp · 124 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38001 76002 114002 152003 bp
Forward strand 5′ → 3′
psbK psbI trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnN-GUU rpl32 trnL-UAG ccsA rps12 rps7 ndhB trnL-CAA trnI-GAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnN-GUU rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
125 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 376 1434 1059 Locate
trnK-UUU gene − 1672 4252 2581 Locate
matK gene − 1963 3309 1347 Locate
rps16 gene − 5129 6298 1170 Locate
psbK gene + 7714 7899 186 Locate
psbI gene + 8292 8402 111 Locate
trnS-GCU gene − 8513 8600 88 Locate
trnR-UCU gene + 10216 10287 72 Locate
atpA gene − 10384 11907 1524 Locate
atpF gene − 11991 13218 1228 Locate
atpH gene − 13575 13820 246 Locate
atpI gene − 14817 15560 744 Locate
rps2 gene − 15909 16619 711 Locate
rpoC2 gene − 16836 21041 4206 Locate
rpoC1 gene − 21196 24024 2829 Locate
rpoB gene − 24051 27263 3213 Locate
trnC-GCA gene + 28428 28498 71 Locate
petN gene + 29210 29299 90 Locate
psbM gene − 30305 30409 105 Locate
trnD-GUC gene − 30936 31009 74 Locate
trnY-GUA gene − 31123 31206 84 Locate
trnE-UUC gene − 31266 31338 73 Locate
trnT-GGU gene + 31811 31882 72 Locate
psbD gene + 33190 34251 1062 Locate
psbC gene + 34199 35620 1422 Locate
psbZ gene + 36267 36455 189 Locate
trnG-GCC gene + 36727 36797 71 Locate
rps14 gene − 37175 37477 303 Locate
psaB gene − 37605 39809 2205 Locate
psaA gene − 39835 42087 2253 Locate
ycf3 gene − 42759 44680 1922 Locate
trnS-GGA gene + 45558 45644 87 Locate
rps4 gene − 45930 46535 606 Locate
trnT-UGU gene − 46876 46948 73 Locate
trnL-UAA gene + 47633 48193 561 Locate
trnF-GAA gene + 48499 48571 73 Locate
ndhJ gene − 49220 49696 477 Locate
ndhK gene − 49804 50481 678 Locate
ndhC gene − 50534 50896 363 Locate
trnV-UAC gene − 51752 52405 654 Locate
trnM-CAU gene + 52586 52658 73 Locate
atpE gene − 52874 53275 402 Locate
atpB gene − 53272 54759 1488 Locate
rbcL gene + 55532 56974 1443 Locate
accD gene + 57708 59174 1467 Locate
psaI gene + 59749 59859 111 Locate
ycf4 gene + 60285 60839 555 Locate
cemA gene + 61577 62176 600 Locate
petA gene + 62383 63345 963 Locate
psbL gene − 64635 64751 117 Locate
psbF gene − 64775 64894 120 Locate
psbE gene − 64909 65160 252 Locate
petL gene + 66069 66164 96 Locate
petG gene + 66340 66453 114 Locate
trnW-CCA gene − 66572 66645 74 Locate
trnP-UGG gene − 66815 66888 74 Locate
psaJ gene + 67161 67295 135 Locate
rpl33 gene + 67769 67969 201 Locate
rps18 gene + 68144 68449 306 Locate
rpl20 gene − 68686 69072 387 Locate
rps12 gene − 69872 69985 114 Locate
clpP gene − 70128 72060 1933 Locate
psbB gene + 72527 74053 1527 Locate
psbT gene + 74245 74346 102 Locate
psbN gene − 74427 74558 132 Locate
psbH gene + 74662 74883 222 Locate
petB gene + 75008 76375 1368 Locate
petD gene + 76564 77765 1202 Locate
rpoA gene − 77928 78941 1014 Locate
rps11 gene − 79013 79429 417 Locate
infA gene − 79740 79973 234 Locate
rps8 gene − 80094 80504 411 Locate
rpl14 gene − 80673 81041 369 Locate
rpl16 gene − 81168 82431 1264 Locate
rps3 gene − 82586 83248 663 Locate
rpl22 gene − 83250 83705 456 Locate
rps19 gene − 83765 84043 279 Locate
rpl2 gene − 84098 85580 1483 Locate
rpl23 gene − 85599 85880 282 Locate
trnI-GAU gene − 86040 86113 74 Locate
ycf2 gene + 86202 93011 6810 Locate
ycf15 gene + 93153 93350 198 Locate
trnL-CAA gene − 93606 93686 81 Locate
ndhB gene − 94229 96440 2212 Locate
rps7 gene − 96715 97182 468 Locate
rps12 gene − 97787 98029 243 Locate
trnV-GAC gene + 99596 99667 72 Locate
rrn16S gene + 99895 101385 1491 Locate
trnI-GAU gene + 101684 102703 1020 Locate
trnA-UGC gene + 102769 103651 883 Locate
rrn23S gene + 103821 106633 2813 Locate
rrn4.5S gene + 106732 106834 103 Locate
rrn5S gene + 107082 107202 121 Locate
trnN-GUU gene + 108057 108128 72 Locate
ndhF gene − 109205 111445 2241 Locate
rpl32 gene + 111966 112142 177 Locate
trnL-UAG gene + 112588 112667 80 Locate
ccsA gene + 112764 113738 975 Locate
ndhD gene − 113971 115476 1506 Locate
psaC gene − 115593 115838 246 Locate
ndhE gene − 116095 116400 306 Locate
ndhG gene − 116631 117161 531 Locate
ndhI gene − 117526 118026 501 Locate
ndhA gene − 118107 120199 2093 Locate
ndhH gene − 120201 121382 1182 Locate
rps15 gene − 121485 121757 273 Locate
ycf1 gene − 122024 127549 5526 Locate
trnN-GUU gene − 127879 127950 72 Locate
rrn5S gene − 128805 128925 121 Locate
rrn4.5S gene − 129173 129275 103 Locate
rrn23S gene − 129374 132186 2813 Locate
trnA-UGC gene − 132356 133238 883 Locate
trnI-GAU gene − 133304 134323 1020 Locate
rrn16S gene − 134622 136112 1491 Locate
trnV-GAC gene − 136340 136411 72 Locate
rps12 gene + 137978 138220 243 Locate
rps7 gene + 138825 139292 468 Locate
ndhB gene + 139567 141778 2212 Locate
trnL-CAA gene + 142321 142401 81 Locate
ycf15 gene − 142657 142854 198 Locate
ycf2 gene − 142996 149805 6810 Locate
trnI-GAU gene + 149894 149967 74 Locate
rpl23 gene + 150127 150408 282 Locate
rpl2 gene + 150427 151909 1483 Locate
Status Available
Accession NC_072111.1
Length 152,003 bp
GC content 38.4%
Annotated genes 124
Gene sequence records 8
Translation Rna 31 Photosystem Ii 14 Other 14 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources