Scutellaria likiangensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_061416.1 · 12–86 bp · −
psbA · NC_061416.1 · 378–1,436 bp · −
trnK-UUU · NC_061416.1 · 1,678–4,245 bp · −
matK · NC_061416.1 · 1,968–3,497 bp · −
rps16 · NC_061416.1 · 5,144–6,323 bp · −
trnQ-UUG · NC_061416.1 · 7,473–7,544 bp · −
trnS-GCU · NC_061416.1 · 8,666–8,753 bp · −
atpA · NC_061416.1 · 10,478–12,001 bp · −
atpF · NC_061416.1 · 12,085–13,313 bp · −
atpH · NC_061416.1 · 13,675–13,920 bp · −
atpI · NC_061416.1 · 14,910–15,653 bp · −
psaI · NC_061416.1 · 15,861–15,920 bp · −
rps2 · NC_061416.1 · 16,000–16,710 bp · −
rpoC2 · NC_061416.1 · 16,925–21,118 bp · −
rpoC1 · NC_061416.1 · 21,285–24,108 bp · −
rpoB · NC_061416.1 · 24,135–27,347 bp · −
psbM · NC_061416.1 · 30,040–30,144 bp · −
trnD-GUC · NC_061416.1 · 30,671–30,744 bp · −
trnY-GUA · NC_061416.1 · 30,863–30,946 bp · −
trnE-UUC · NC_061416.1 · 31,006–31,078 bp · −
trnS-UGA · NC_061416.1 · 35,497–35,589 bp · −
trnfM-CAU · NC_061416.1 · 36,583–36,656 bp · −
rps14 · NC_061416.1 · 36,811–37,113 bp · −
psaB · NC_061416.1 · 37,241–39,445 bp · −
psaA · NC_061416.1 · 39,471–41,723 bp · −
pafI · NC_061416.1 · 42,411–44,341 bp · −
rps4 · NC_061416.1 · 45,614–46,219 bp · −
trnT-UGU · NC_061416.1 · 46,566–46,638 bp · −
ndhJ · NC_061416.1 · 48,935–49,411 bp · −
ndhK · NC_061416.1 · 49,520–50,197 bp · −
ndhC · NC_061416.1 · 50,251–50,613 bp · −
trnV-UAC · NC_061416.1 · 51,606–52,258 bp · −
atpE · NC_061416.1 · 52,728–53,129 bp · −
atpB · NC_061416.1 · 53,126–54,622 bp · −
psbJ · NC_061416.1 · 64,385–64,507 bp · −
psbL · NC_061416.1 · 64,641–64,757 bp · −
psbF · NC_061416.1 · 64,781–64,900 bp · −
psbE · NC_061416.1 · 64,915–65,166 bp · −
trnW-CCA · NC_061416.1 · 66,531–66,604 bp · −
trnP-UGG · NC_061416.1 · 66,768–66,841 bp · −
rpl20 · NC_061416.1 · 68,634–69,020 bp · −
rps12 · NC_061416.1 · 69,817–69,930 bp · −
rps12 · NC_061416.1 · 97,139–97,932 bp · −
clpP1 · NC_061416.1 · 70,083–72,022 bp · −
pbf1 · NC_061416.1 · 74,372–74,503 bp · −
rpoA · NC_061416.1 · 77,868–78,881 bp · −
rps11 · NC_061416.1 · 78,953–79,369 bp · −
rpl36 · NC_061416.1 · 79,471–79,584 bp · −
infA · NC_061416.1 · 79,679–79,912 bp · −
rps8 · NC_061416.1 · 80,036–80,446 bp · −
rpl14 · NC_061416.1 · 80,603–80,971 bp · −
rpl16 · NC_061416.1 · 81,098–82,330 bp · −
rps3 · NC_061416.1 · 82,485–83,147 bp · −
rpl22 · NC_061416.1 · 83,149–83,604 bp · −
rps19 · NC_061416.1 · 83,664–83,942 bp · −
rpl2 · NC_061416.1 · 83,998–85,479 bp · −
rpl23 · NC_061416.1 · 85,498–85,779 bp · −
trnI-CAU · NC_061416.1 · 85,939–86,012 bp · −
trnL-CAA · NC_061416.1 · 93,509–93,589 bp · −
ndhB · NC_061416.1 · 94,132–96,343 bp · −
rps7 · NC_061416.1 · 96,618–97,085 bp · −
trnN-GUU · NC_061416.1 · 107,971–108,042 bp · −
ndhF · NC_061416.1 · 109,119–111,359 bp · −
ndhD · NC_061416.1 · 113,724–115,226 bp · −
psaC · NC_061416.1 · 115,353–115,598 bp · −
ndhE · NC_061416.1 · 115,854–116,159 bp · −
ndhG · NC_061416.1 · 116,381–116,911 bp · −
ndhI · NC_061416.1 · 117,274–117,774 bp · −
ndhA · NC_061416.1 · 117,855–119,962 bp · −
ndhH · NC_061416.1 · 119,964–121,145 bp · −
rps15 · NC_061416.1 · 121,242–121,514 bp · −
ycf1 · NC_061416.1 · 121,730–127,276 bp · −
trnR-ACG · NC_061416.1 · 128,234–128,307 bp · −
rrn5 · NC_061416.1 · 128,542–128,662 bp · −
rrn4.5 · NC_061416.1 · 128,910–129,012 bp · −
rrn23 · NC_061416.1 · 129,111–131,922 bp · −
trnA-UGC · NC_061416.1 · 132,092–132,982 bp · −
trnI-GAU · NC_061416.1 · 133,046–134,066 bp · −
rrn16 · NC_061416.1 · 134,365–135,855 bp · −
trnV-GAC · NC_061416.1 · 136,082–136,153 bp · −
ycf15 · NC_061416.1 · 142,399–142,647 bp · −
ycf2 · NC_061416.1 · 142,738–149,547 bp · −
psbK · NC_061416.1 · 7,869–8,054 bp · +
psbI · NC_061416.1 · 8,442–8,552 bp · +
trnG-UCC · NC_061416.1 · 9,384–10,135 bp · +
trnR-UCU · NC_061416.1 · 10,310–10,381 bp · +
trnC-GCA · NC_061416.1 · 28,509–28,579 bp · +
petN · NC_061416.1 · 28,868–28,957 bp · +
trnT-GGU · NC_061416.1 · 31,654–31,725 bp · +
psbD · NC_061416.1 · 32,830–33,891 bp · +
psbC · NC_061416.1 · 33,875–35,260 bp · +
psbZ · NC_061416.1 · 35,905–36,093 bp · +
trnG-GCC · NC_061416.1 · 36,368–36,438 bp · +
trnS-GGA · NC_061416.1 · 45,246–45,332 bp · +
trnL-UAA · NC_061416.1 · 47,342–47,908 bp · +
trnF-GAA · NC_061416.1 · 48,216–48,288 bp · +
trnM-CAU · NC_061416.1 · 52,447–52,519 bp · +
rbcL · NC_061416.1 · 55,388–56,830 bp · +
accD · NC_061416.1 · 57,548–59,026 bp · +
psaI · NC_061416.1 · 59,770–59,880 bp · +
pafII · NC_061416.1 · 60,314–60,868 bp · +
cemA · NC_061416.1 · 61,487–62,209 bp · +
petA · NC_061416.1 · 62,411–63,373 bp · +
petL · NC_061416.1 · 66,028–66,123 bp · +
petG · NC_061416.1 · 66,299–66,412 bp · +
psaJ · NC_061416.1 · 67,111–67,245 bp · +
rpl33 · NC_061416.1 · 67,720–67,920 bp · +
rps18 · NC_061416.1 · 68,095–68,400 bp · +
rps12 · NC_061416.1 · 137,716–138,509 bp · +
psbB · NC_061416.1 · 72,480–74,006 bp · +
psbT · NC_061416.1 · 74,204–74,311 bp · +
psbH · NC_061416.1 · 74,607–74,828 bp · +
petB · NC_061416.1 · 74,953–76,320 bp · +
petD · NC_061416.1 · 76,509–77,705 bp · +
ycf2 · NC_061416.1 · 86,101–92,910 bp · +
ycf15 · NC_061416.1 · 93,001–93,249 bp · +
trnV-GAC · NC_061416.1 · 99,495–99,566 bp · +
rrn16 · NC_061416.1 · 99,793–101,283 bp · +
trnI-GAU · NC_061416.1 · 101,582–102,602 bp · +
trnA-UGC · NC_061416.1 · 102,666–103,556 bp · +
rrn23 · NC_061416.1 · 103,726–106,537 bp · +
rrn4.5 · NC_061416.1 · 106,636–106,738 bp · +
rrn5 · NC_061416.1 · 106,986–107,106 bp · +
trnR-ACG · NC_061416.1 · 107,341–107,414 bp · +
ycf1 · NC_061416.1 · 108,372–109,154 bp · +
rpl32 · NC_061416.1 · 111,880–112,056 bp · +
trnL-UAG · NC_061416.1 · 112,342–112,421 bp · +
ccsA · NC_061416.1 · 112,516–113,490 bp · +
trnN-GUU · NC_061416.1 · 127,606–127,677 bp · +
rps7 · NC_061416.1 · 138,563–139,030 bp · +
ndhB · NC_061416.1 · 139,305–141,516 bp · +
trnL-CAA · NC_061416.1 · 142,059–142,139 bp · +
trnI-CAU · NC_061416.1 · 149,636–149,709 bp · +
rpl23 · NC_061416.1 · 149,869–150,150 bp · +
rpl2 · NC_061416.1 · 150,169–151,650 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria likiangensis
ANNOTATED PLASTOME
NC_061416.1
151,761 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
Photosystem I
RNA polymerase
Cytochrome
NADH dehydrogenase
Ribosomal RNA
0 37940 75880 113821 151761 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI psaI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 86 75 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1678 4245 2568 Locate
matK gene − 1968 3497 1530 Locate
rps16 gene − 5144 6323 1180 Locate
trnQ-UUG gene − 7473 7544 72 Locate
psbK gene + 7869 8054 186 Locate
psbI gene + 8442 8552 111 Locate
trnS-GCU gene − 8666 8753 88 Locate
trnG-UCC gene + 9384 10135 752 Locate
trnR-UCU gene + 10310 10381 72 Locate
atpA gene − 10478 12001 1524 Locate
atpF gene − 12085 13313 1229 Locate
atpH gene − 13675 13920 246 Locate
atpI gene − 14910 15653 744 Locate
psaI gene − 15861 15920 60 Locate
rps2 gene − 16000 16710 711 Locate
rpoC2 gene − 16925 21118 4194 Locate
rpoC1 gene − 21285 24108 2824 Locate
rpoB gene − 24135 27347 3213 Locate
trnC-GCA gene + 28509 28579 71 Locate
petN gene + 28868 28957 90 Locate
psbM gene − 30040 30144 105 Locate
trnD-GUC gene − 30671 30744 74 Locate
trnY-GUA gene − 30863 30946 84 Locate
trnE-UUC gene − 31006 31078 73 Locate
trnT-GGU gene + 31654 31725 72 Locate
psbD gene + 32830 33891 1062 Locate
psbC gene + 33875 35260 1386 Locate
trnS-UGA gene − 35497 35589 93 Locate
psbZ gene + 35905 36093 189 Locate
trnG-GCC gene + 36368 36438 71 Locate
trnfM-CAU gene − 36583 36656 74 Locate
rps14 gene − 36811 37113 303 Locate
psaB gene − 37241 39445 2205 Locate
psaA gene − 39471 41723 2253 Locate
pafI gene − 42411 44341 1931 Locate
trnS-GGA gene + 45246 45332 87 Locate
rps4 gene − 45614 46219 606 Locate
trnT-UGU gene − 46566 46638 73 Locate
trnL-UAA gene + 47342 47908 567 Locate
trnF-GAA gene + 48216 48288 73 Locate
ndhJ gene − 48935 49411 477 Locate
ndhK gene − 49520 50197 678 Locate
ndhC gene − 50251 50613 363 Locate
trnV-UAC gene − 51606 52258 653 Locate
trnM-CAU gene + 52447 52519 73 Locate
atpE gene − 52728 53129 402 Locate
atpB gene − 53126 54622 1497 Locate
rbcL gene + 55388 56830 1443 Locate
accD gene + 57548 59026 1479 Locate
psaI gene + 59770 59880 111 Locate
pafII gene + 60314 60868 555 Locate
cemA gene + 61487 62209 723 Locate
petA gene + 62411 63373 963 Locate
psbJ gene − 64385 64507 123 Locate
psbL gene − 64641 64757 117 Locate
psbF gene − 64781 64900 120 Locate
psbE gene − 64915 65166 252 Locate
petL gene + 66028 66123 96 Locate
petG gene + 66299 66412 114 Locate
trnW-CCA gene − 66531 66604 74 Locate
trnP-UGG gene − 66768 66841 74 Locate
psaJ gene + 67111 67245 135 Locate
rpl33 gene + 67720 67920 201 Locate
rps18 gene + 68095 68400 306 Locate
rpl20 gene − 68634 69020 387 Locate
rps12 gene − 69817 69930 114 Locate
clpP1 gene − 70083 72022 1940 Locate
psbB gene + 72480 74006 1527 Locate
psbT gene + 74204 74311 108 Locate
pbf1 gene − 74372 74503 132 Locate
psbH gene + 74607 74828 222 Locate
petB gene + 74953 76320 1368 Locate
petD gene + 76509 77705 1197 Locate
rpoA gene − 77868 78881 1014 Locate
rps11 gene − 78953 79369 417 Locate
rpl36 gene − 79471 79584 114 Locate
infA gene − 79679 79912 234 Locate
rps8 gene − 80036 80446 411 Locate
rpl14 gene − 80603 80971 369 Locate
rpl16 gene − 81098 82330 1233 Locate
rps3 gene − 82485 83147 663 Locate
rpl22 gene − 83149 83604 456 Locate
rps19 gene − 83664 83942 279 Locate
rpl2 gene − 83998 85479 1482 Locate
rpl23 gene − 85498 85779 282 Locate
trnI-CAU gene − 85939 86012 74 Locate
ycf2 gene + 86101 92910 6810 Locate
ycf15 gene + 93001 93249 249 Locate
trnL-CAA gene − 93509 93589 81 Locate
ndhB gene − 94132 96343 2212 Locate
rps7 gene − 96618 97085 468 Locate
rps12 gene − 97139 97932 794 Locate
trnV-GAC gene + 99495 99566 72 Locate
rrn16 gene + 99793 101283 1491 Locate
trnI-GAU gene + 101582 102602 1021 Locate
trnA-UGC gene + 102666 103556 891 Locate
rrn23 gene + 103726 106537 2812 Locate
rrn4.5 gene + 106636 106738 103 Locate
rrn5 gene + 106986 107106 121 Locate
trnR-ACG gene + 107341 107414 74 Locate
trnN-GUU gene − 107971 108042 72 Locate
ycf1 gene + 108372 109154 783 Locate
ndhF gene − 109119 111359 2241 Locate
rpl32 gene + 111880 112056 177 Locate
trnL-UAG gene + 112342 112421 80 Locate
ccsA gene + 112516 113490 975 Locate
ndhD gene − 113724 115226 1503 Locate
psaC gene − 115353 115598 246 Locate
ndhE gene − 115854 116159 306 Locate
ndhG gene − 116381 116911 531 Locate
ndhI gene − 117274 117774 501 Locate
ndhA gene − 117855 119962 2108 Locate
ndhH gene − 119964 121145 1182 Locate
rps15 gene − 121242 121514 273 Locate
ycf1 gene − 121730 127276 5547 Locate
trnN-GUU gene + 127606 127677 72 Locate
trnR-ACG gene − 128234 128307 74 Locate
rrn5 gene − 128542 128662 121 Locate
rrn4.5 gene − 128910 129012 103 Locate
rrn23 gene − 129111 131922 2812 Locate
trnA-UGC gene − 132092 132982 891 Locate
trnI-GAU gene − 133046 134066 1021 Locate
rrn16 gene − 134365 135855 1491 Locate
trnV-GAC gene − 136082 136153 72 Locate
rps12 gene + 137716 138509 794 Locate
rps7 gene + 138563 139030 468 Locate
ndhB gene + 139305 141516 2212 Locate
trnL-CAA gene + 142059 142139 81 Locate
ycf15 gene − 142399 142647 249 Locate
ycf2 gene − 142738 149547 6810 Locate
trnI-CAU gene + 149636 149709 74 Locate
rpl23 gene + 149869 150150 282 Locate
rpl2 gene + 150169 151650 1482 Locate
Status Available
Accession NC_061416.1
Length 151,761 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Photosystem I 6 Rna Polymerase 4 Cytochrome 6 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources