Scutellaria longifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420966.1 · 3–76 bp · −
psbA · MW420966.1 · 374–1,432 bp · −
trnK-UUU · MW420966.1 · 1,677–4,266 bp · −
matK · MW420966.1 · 1,968–3,512 bp · −
rps16 · MW420966.1 · 5,177–6,304 bp · −
trnQ-UUC · MW420966.1 · 7,435–7,506 bp · −
trnS-GCU · MW420966.1 · 8,639–8,726 bp · −
atpA · MW420966.1 · 10,507–12,030 bp · −
atpF · MW420966.1 · 12,114–13,343 bp · −
atpH · MW420966.1 · 13,705–13,950 bp · −
atpI · MW420966.1 · 14,940–15,683 bp · −
rps2 · MW420966.1 · 16,026–16,736 bp · −
rpoC2 · MW420966.1 · 16,953–21,158 bp · −
rpoC1 · MW420966.1 · 21,304–24,114 bp · −
rpoB · MW420966.1 · 24,141–27,353 bp · −
psbM · MW420966.1 · 30,385–30,498 bp · −
trnD-GUC · MW420966.1 · 31,025–31,098 bp · −
trnY-GUA · MW420966.1 · 31,212–31,295 bp · −
trnE-UUC · MW420966.1 · 31,355–31,427 bp · −
trnS-UCA · MW420966.1 · 36,031–36,123 bp · −
trnfM-CAU · MW420966.1 · 37,117–37,190 bp · −
rps14 · MW420966.1 · 37,340–37,642 bp · −
psaB · MW420966.1 · 37,770–39,974 bp · −
psaA · MW420966.1 · 40,000–42,252 bp · −
ycf3 · MW420966.1 · 42,952–44,875 bp · −
rps4 · MW420966.1 · 46,128–46,733 bp · −
trnT-UGU · MW420966.1 · 47,068–47,140 bp · −
ndhJ · MW420966.1 · 49,402–49,878 bp · −
ndhK · MW420966.1 · 50,022–50,663 bp · −
ndhC · MW420966.1 · 50,717–51,079 bp · −
trnV-UAC · MW420966.1 · 51,536–52,189 bp · −
atpE · MW420966.1 · 52,651–53,052 bp · −
atpB · MW420966.1 · 53,049–54,545 bp · −
psbJ · MW420966.1 · 64,296–64,418 bp · −
psbL · MW420966.1 · 64,552–64,668 bp · −
psbF · MW420966.1 · 64,692–64,811 bp · −
psbE · MW420966.1 · 64,826–65,077 bp · −
trnW-CCA · MW420966.1 · 66,478–66,551 bp · −
trnP-UGG · MW420966.1 · 66,721–66,794 bp · −
rpl20 · MW420966.1 · 68,608–68,994 bp · −
rps12 · MW420966.1 · 69,779–69,904 bp · −
rps12 · MW420966.1 · 97,107–97,897 bp · −
clpP · MW420966.1 · 70,046–71,988 bp · −
psbN · MW420966.1 · 74,338–74,469 bp · −
rpoA · MW420966.1 · 77,839–78,849 bp · −
rps11 · MW420966.1 · 78,921–79,337 bp · −
rpl36 · MW420966.1 · 79,438–79,551 bp · −
infA · MW420966.1 · 79,647–79,880 bp · −
rps8 · MW420966.1 · 79,997–80,407 bp · −
rpl14 · MW420966.1 · 80,576–80,944 bp · −
rpl16 · MW420966.1 · 81,056–82,300 bp · −
rps3 · MW420966.1 · 82,455–83,117 bp · −
rpl22 · MW420966.1 · 83,119–83,574 bp · −
rps19 · MW420966.1 · 83,634–83,912 bp · −
rpl2 · MW420966.1 · 83,967–85,455 bp · −
rpl23 · MW420966.1 · 85,474–85,755 bp · −
trnI-CAU · MW420966.1 · 85,915–85,988 bp · −
trnL-CAA · MW420966.1 · 93,486–93,566 bp · −
ndhB · MW420966.1 · 94,100–96,311 bp · −
rps7 · MW420966.1 · 96,586–97,053 bp · −
ndhF · MW420966.1 · 109,071–111,299 bp · −
ndhD · MW420966.1 · 113,805–115,115 bp · −
psaC · MW420966.1 · 115,434–115,679 bp · −
ndhE · MW420966.1 · 115,918–116,223 bp · −
ndhG · MW420966.1 · 116,445–116,975 bp · −
ndhI · MW420966.1 · 117,338–117,838 bp · −
ndhA · MW420966.1 · 117,919–120,019 bp · −
ndhH · MW420966.1 · 120,021–121,202 bp · −
rps15 · MW420966.1 · 121,291–121,563 bp · −
ycf1 · MW420966.1 · 121,850–127,270 bp · −
trnR-ACC · MW420966.1 · 128,228–128,301 bp · −
rrn5 · MW420966.1 · 128,536–128,656 bp · −
rrn4.5 · MW420966.1 · 128,904–129,006 bp · −
rrn23 · MW420966.1 · 129,105–131,917 bp · −
trnA-UGC · MW420966.1 · 132,087–132,974 bp · −
trnI-GAU · MW420966.1 · 133,040–134,058 bp · −
rrn16 · MW420966.1 · 134,357–135,847 bp · −
trnV-GAC · MW420966.1 · 136,075–136,146 bp · −
ycf15 · MW420966.1 · 142,389–142,586 bp · −
ycf2 · MW420966.1 · 142,728–149,537 bp · −
psbK · MW420966.1 · 7,831–8,016 bp · +
psbI · MW420966.1 · 8,418–8,528 bp · +
trnG-UCC · MW420966.1 · 9,412–10,158 bp · +
trnR-UCU · MW420966.1 · 10,339–10,410 bp · +
trnC-GCA · MW420966.1 · 28,506–28,576 bp · +
petN · MW420966.1 · 29,288–29,377 bp · +
trnT-GGU · MW420966.1 · 31,991–32,062 bp · +
psbD · MW420966.1 · 33,356–34,417 bp · +
psbC · MW420966.1 · 34,365–35,786 bp · +
psbZ · MW420966.1 · 36,443–36,631 bp · +
trnG-GCC · MW420966.1 · 36,903–36,973 bp · +
trnS-GGA · MW420966.1 · 45,758–45,844 bp · +
trnL-UAA · MW420966.1 · 47,810–48,377 bp · +
trnF-GAA · MW420966.1 · 48,681–48,753 bp · +
trnM-CAU · MW420966.1 · 52,370–52,442 bp · +
rbcL · MW420966.1 · 55,318–56,760 bp · +
accD · MW420966.1 · 57,481–58,959 bp · +
psaI · MW420966.1 · 59,671–59,781 bp · +
ycf4 · MW420966.1 · 60,207–60,761 bp · +
cemA · MW420966.1 · 61,414–62,103 bp · +
petA · MW420966.1 · 62,310–63,272 bp · +
petL · MW420966.1 · 65,975–66,070 bp · +
petG · MW420966.1 · 66,246–66,359 bp · +
psaJ · MW420966.1 · 67,068–67,202 bp · +
rpl33 · MW420966.1 · 67,690–67,890 bp · +
rps18 · MW420966.1 · 68,065–68,370 bp · +
rps12 · MW420966.1 · 137,717–138,507 bp · +
psbB · MW420966.1 · 72,452–73,978 bp · +
psbT · MW420966.1 · 74,170–74,277 bp · +
psbH · MW420966.1 · 74,573–74,794 bp · +
petB · MW420966.1 · 74,920–76,289 bp · +
petD · MW420966.1 · 76,478–77,676 bp · +
ycf2 · MW420966.1 · 86,077–92,886 bp · +
ycf15 · MW420966.1 · 93,028–93,225 bp · +
trnV-GAC · MW420966.1 · 99,468–99,539 bp · +
rrn16 · MW420966.1 · 99,767–101,257 bp · +
trnI-GAU · MW420966.1 · 101,556–102,574 bp · +
trnA-UGC · MW420966.1 · 102,640–103,527 bp · +
rrn23 · MW420966.1 · 103,697–106,509 bp · +
rrn4.5 · MW420966.1 · 106,608–106,710 bp · +
rrn5 · MW420966.1 · 106,958–107,078 bp · +
trnR-ACC · MW420966.1 · 107,313–107,386 bp · +
trnN-GUU · MW420966.1 · 107,943–108,014 bp · +
rpl32 · MW420966.1 · 111,802–111,978 bp · +
trnL-UAG · MW420966.1 · 112,414–112,493 bp · +
ccsA · MW420966.1 · 112,598–113,572 bp · +
trnN-GUU · MW420966.1 · 127,600–127,671 bp · +
rps7 · MW420966.1 · 138,561–139,028 bp · +
ndhB · MW420966.1 · 139,303–141,514 bp · +
trnL-CAA · MW420966.1 · 142,048–142,128 bp · +
trnI-CAU · MW420966.1 · 149,626–149,699 bp · +
rpl23 · MW420966.1 · 149,859–150,140 bp · +
rpl2 · MW420966.1 · 150,159–151,647 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria longifolia
ANNOTATED PLASTOME
MW420966.1
151,742 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37936 75871 113806 151742 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1677 4266 2590 Locate
matK gene − 1968 3512 1545 Locate
rps16 gene − 5177 6304 1128 Locate
trnQ-UUC gene − 7435 7506 72 Locate
psbK gene + 7831 8016 186 Locate
psbI gene + 8418 8528 111 Locate
trnS-GCU gene − 8639 8726 88 Locate
trnG-UCC gene + 9412 10158 747 Locate
trnR-UCU gene + 10339 10410 72 Locate
atpA gene − 10507 12030 1524 Locate
atpF gene − 12114 13343 1230 Locate
atpH gene − 13705 13950 246 Locate
atpI gene − 14940 15683 744 Locate
rps2 gene − 16026 16736 711 Locate
rpoC2 gene − 16953 21158 4206 Locate
rpoC1 gene − 21304 24114 2811 Locate
rpoB gene − 24141 27353 3213 Locate
trnC-GCA gene + 28506 28576 71 Locate
petN gene + 29288 29377 90 Locate
psbM gene − 30385 30498 114 Locate
trnD-GUC gene − 31025 31098 74 Locate
trnY-GUA gene − 31212 31295 84 Locate
trnE-UUC gene − 31355 31427 73 Locate
trnT-GGU gene + 31991 32062 72 Locate
psbD gene + 33356 34417 1062 Locate
psbC gene + 34365 35786 1422 Locate
trnS-UCA gene − 36031 36123 93 Locate
psbZ gene + 36443 36631 189 Locate
trnG-GCC gene + 36903 36973 71 Locate
trnfM-CAU gene − 37117 37190 74 Locate
rps14 gene − 37340 37642 303 Locate
psaB gene − 37770 39974 2205 Locate
psaA gene − 40000 42252 2253 Locate
ycf3 gene − 42952 44875 1924 Locate
trnS-GGA gene + 45758 45844 87 Locate
rps4 gene − 46128 46733 606 Locate
trnT-UGU gene − 47068 47140 73 Locate
trnL-UAA gene + 47810 48377 568 Locate
trnF-GAA gene + 48681 48753 73 Locate
ndhJ gene − 49402 49878 477 Locate
ndhK gene − 50022 50663 642 Locate
ndhC gene − 50717 51079 363 Locate
trnV-UAC gene − 51536 52189 654 Locate
trnM-CAU gene + 52370 52442 73 Locate
atpE gene − 52651 53052 402 Locate
atpB gene − 53049 54545 1497 Locate
rbcL gene + 55318 56760 1443 Locate
accD gene + 57481 58959 1479 Locate
psaI gene + 59671 59781 111 Locate
ycf4 gene + 60207 60761 555 Locate
cemA gene + 61414 62103 690 Locate
petA gene + 62310 63272 963 Locate
psbJ gene − 64296 64418 123 Locate
psbL gene − 64552 64668 117 Locate
psbF gene − 64692 64811 120 Locate
psbE gene − 64826 65077 252 Locate
petL gene + 65975 66070 96 Locate
petG gene + 66246 66359 114 Locate
trnW-CCA gene − 66478 66551 74 Locate
trnP-UGG gene − 66721 66794 74 Locate
psaJ gene + 67068 67202 135 Locate
rpl33 gene + 67690 67890 201 Locate
rps18 gene + 68065 68370 306 Locate
rpl20 gene − 68608 68994 387 Locate
rps12 gene − 69779 69904 126 Locate
clpP gene − 70046 71988 1943 Locate
psbB gene + 72452 73978 1527 Locate
psbT gene + 74170 74277 108 Locate
psbN gene − 74338 74469 132 Locate
psbH gene + 74573 74794 222 Locate
petB gene + 74920 76289 1370 Locate
petD gene + 76478 77676 1199 Locate
rpoA gene − 77839 78849 1011 Locate
rps11 gene − 78921 79337 417 Locate
rpl36 gene − 79438 79551 114 Locate
infA gene − 79647 79880 234 Locate
rps8 gene − 79997 80407 411 Locate
rpl14 gene − 80576 80944 369 Locate
rpl16 gene − 81056 82300 1245 Locate
rps3 gene − 82455 83117 663 Locate
rpl22 gene − 83119 83574 456 Locate
rps19 gene − 83634 83912 279 Locate
rpl2 gene − 83967 85455 1489 Locate
rpl23 gene − 85474 85755 282 Locate
trnI-CAU gene − 85915 85988 74 Locate
ycf2 gene + 86077 92886 6810 Locate
ycf15 gene + 93028 93225 198 Locate
trnL-CAA gene − 93486 93566 81 Locate
ndhB gene − 94100 96311 2212 Locate
rps7 gene − 96586 97053 468 Locate
rps12 gene − 97107 97897 791 Locate
trnV-GAC gene + 99468 99539 72 Locate
rrn16 gene + 99767 101257 1491 Locate
trnI-GAU gene + 101556 102574 1019 Locate
trnA-UGC gene + 102640 103527 888 Locate
rrn23 gene + 103697 106509 2813 Locate
rrn4.5 gene + 106608 106710 103 Locate
rrn5 gene + 106958 107078 121 Locate
trnR-ACC gene + 107313 107386 74 Locate
trnN-GUU gene + 107943 108014 72 Locate
ndhF gene − 109071 111299 2229 Locate
rpl32 gene + 111802 111978 177 Locate
trnL-UAG gene + 112414 112493 80 Locate
ccsA gene + 112598 113572 975 Locate
ndhD gene − 113805 115115 1311 Locate
psaC gene − 115434 115679 246 Locate
ndhE gene − 115918 116223 306 Locate
ndhG gene − 116445 116975 531 Locate
ndhI gene − 117338 117838 501 Locate
ndhA gene − 117919 120019 2101 Locate
ndhH gene − 120021 121202 1182 Locate
rps15 gene − 121291 121563 273 Locate
ycf1 gene − 121850 127270 5421 Locate
trnN-GUU gene + 127600 127671 72 Locate
trnR-ACC gene − 128228 128301 74 Locate
rrn5 gene − 128536 128656 121 Locate
rrn4.5 gene − 128904 129006 103 Locate
rrn23 gene − 129105 131917 2813 Locate
trnA-UGC gene − 132087 132974 888 Locate
trnI-GAU gene − 133040 134058 1019 Locate
rrn16 gene − 134357 135847 1491 Locate
trnV-GAC gene − 136075 136146 72 Locate
rps12 gene + 137717 138507 791 Locate
rps7 gene + 138561 139028 468 Locate
ndhB gene + 139303 141514 2212 Locate
trnL-CAA gene + 142048 142128 81 Locate
ycf15 gene − 142389 142586 198 Locate
ycf2 gene − 142728 149537 6810 Locate
trnI-CAU gene + 149626 149699 74 Locate
rpl23 gene + 149859 150140 282 Locate
rpl2 gene + 150159 151647 1489 Locate
Status Available
Accession MW420966.1
Length 151,742 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources