Scutellaria pinnatifida subsp. pichleri chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420935.1 · 4–77 bp · −
psbA · MW420935.1 · 374–1,432 bp · −
trnK-UUU · MW420935.1 · 1,678–4,251 bp · −
matK · MW420935.1 · 1,964–3,490 bp · −
rps16 · MW420935.1 · 5,158–6,318 bp · −
trnQ-UUC · MW420935.1 · 7,054–7,125 bp · −
trnS-GCU · MW420935.1 · 8,254–8,341 bp · −
atpA · MW420935.1 · 10,141–11,664 bp · −
atpF · MW420935.1 · 11,746–12,975 bp · −
atpH · MW420935.1 · 13,331–13,576 bp · −
atpI · MW420935.1 · 14,564–15,307 bp · −
rps2 · MW420935.1 · 15,653–16,363 bp · −
rpoC2 · MW420935.1 · 16,579–20,784 bp · −
rpoC1 · MW420935.1 · 20,939–23,775 bp · −
rpoB · MW420935.1 · 23,802–27,014 bp · −
psbM · MW420935.1 · 30,043–30,147 bp · −
trnD-GUC · MW420935.1 · 30,673–30,746 bp · −
trnY-GUA · MW420935.1 · 30,860–30,943 bp · −
trnE-UUC · MW420935.1 · 31,003–31,075 bp · −
trnS-UCA · MW420935.1 · 35,693–35,785 bp · −
trnfM-CAU · MW420935.1 · 36,784–36,857 bp · −
rps14 · MW420935.1 · 37,012–37,314 bp · −
psaB · MW420935.1 · 37,443–39,647 bp · −
psaA · MW420935.1 · 39,673–41,925 bp · −
ycf3 · MW420935.1 · 42,628–44,549 bp · −
rps4 · MW420935.1 · 45,794–46,399 bp · −
trnT-UGU · MW420935.1 · 46,741–46,813 bp · −
ndhJ · MW420935.1 · 49,071–49,547 bp · −
ndhK · MW420935.1 · 49,656–50,333 bp · −
ndhC · MW420935.1 · 50,387–50,749 bp · −
trnV-UAC · MW420935.1 · 51,735–52,387 bp · −
atpE · MW420935.1 · 52,842–53,243 bp · −
atpB · MW420935.1 · 53,240–54,736 bp · −
psbJ · MW420935.1 · 64,305–64,427 bp · −
psbL · MW420935.1 · 64,561–64,677 bp · −
psbF · MW420935.1 · 64,701–64,820 bp · −
psbE · MW420935.1 · 64,835–65,086 bp · −
trnW-CCA · MW420935.1 · 66,467–66,540 bp · −
trnP-UGG · MW420935.1 · 66,710–66,783 bp · −
rpl20 · MW420935.1 · 68,588–68,974 bp · −
rps12 · MW420935.1 · 69,754–69,882 bp · −
rps12 · MW420935.1 · 97,029–97,819 bp · −
rps12 · MW420935.1 · 69,757–69,882 bp · −
rps12 · MW420935.1 · 97,591–97,819 bp · −
rps12 · MW420935.1 · 97,029–97,054 bp · −
clpP · MW420935.1 · 70,024–71,952 bp · −
psbN · MW420935.1 · 74,290–74,421 bp · −
rpoA · MW420935.1 · 77,791–78,783 bp · −
rps11 · MW420935.1 · 78,855–79,271 bp · −
rpl36 · MW420935.1 · 79,373–79,486 bp · −
infA · MW420935.1 · 79,581–79,814 bp · −
rps8 · MW420935.1 · 79,938–80,348 bp · −
rpl14 · MW420935.1 · 80,501–80,869 bp · −
rpl16 · MW420935.1 · 80,996–82,229 bp · −
rps3 · MW420935.1 · 82,385–83,047 bp · −
rpl22 · MW420935.1 · 83,049–83,504 bp · −
rps19 · MW420935.1 · 83,564–83,842 bp · −
rpl2 · MW420935.1 · 83,897–85,378 bp · −
rpl23 · MW420935.1 · 85,397–85,678 bp · −
trnI-CAU · MW420935.1 · 85,838–85,911 bp · −
trnL-CAA · MW420935.1 · 93,399–93,479 bp · −
ndhB · MW420935.1 · 94,022–96,233 bp · −
rps7 · MW420935.1 · 96,508–96,975 bp · −
ndhF · MW420935.1 · 108,977–111,238 bp · −
ndhD · MW420935.1 · 113,565–115,085 bp · −
psaC · MW420935.1 · 115,195–115,440 bp · −
ndhE · MW420935.1 · 115,696–116,001 bp · −
ndhG · MW420935.1 · 116,218–116,748 bp · −
ndhI · MW420935.1 · 117,116–117,616 bp · −
ndhA · MW420935.1 · 117,702–119,823 bp · −
ndhH · MW420935.1 · 119,825–121,006 bp · −
rps15 · MW420935.1 · 121,103–121,375 bp · −
ycf1 · MW420935.1 · 121,573–127,098 bp · −
trnR-ACC · MW420935.1 · 128,048–128,121 bp · −
rrn5 · MW420935.1 · 128,356–128,476 bp · −
rrn4.5 · MW420935.1 · 128,724–128,826 bp · −
rrn23 · MW420935.1 · 128,925–131,736 bp · −
trnA-UGC · MW420935.1 · 131,899–132,785 bp · −
trnI-GAU · MW420935.1 · 132,851–133,870 bp · −
rrn16 · MW420935.1 · 134,169–135,659 bp · −
trnV-GAC · MW420935.1 · 135,886–135,957 bp · −
ycf15 · MW420935.1 · 142,209–142,472 bp · −
ycf2 · MW420935.1 · 142,548–149,348 bp · −
psbK · MW420935.1 · 7,450–7,635 bp · +
psbI · MW420935.1 · 8,025–8,135 bp · +
trnG-UCC · MW420935.1 · 9,042–9,798 bp · +
trnR-UCU · MW420935.1 · 9,973–10,044 bp · +
trnC-GCA · MW420935.1 · 28,175–28,245 bp · +
petN · MW420935.1 · 28,963–29,052 bp · +
trnT-GGU · MW420935.1 · 31,651–31,722 bp · +
psbD · MW420935.1 · 33,028–34,089 bp · +
psbC · MW420935.1 · 34,037–35,458 bp · +
psbZ · MW420935.1 · 36,101–36,289 bp · +
trnG-GCC · MW420935.1 · 36,567–36,637 bp · +
trnS-GGA · MW420935.1 · 45,432–45,518 bp · +
trnL-UAA · MW420935.1 · 47,494–48,054 bp · +
trnF-GAA · MW420935.1 · 48,357–48,429 bp · +
trnM-CAU · MW420935.1 · 52,576–52,648 bp · +
rbcL · MW420935.1 · 55,498–56,940 bp · +
accD · MW420935.1 · 57,655–59,133 bp · +
psaI · MW420935.1 · 59,680–59,790 bp · +
ycf4 · MW420935.1 · 60,224–60,778 bp · +
cemA · MW420935.1 · 61,467–62,126 bp · +
petA · MW420935.1 · 62,333–63,295 bp · +
petL · MW420935.1 · 65,964–66,059 bp · +
petG · MW420935.1 · 66,235–66,348 bp · +
psaJ · MW420935.1 · 67,055–67,189 bp · +
rpl33 · MW420935.1 · 67,673–67,873 bp · +
rps18 · MW420935.1 · 68,048–68,353 bp · +
rps12 · MW420935.1 · 137,529–138,319 bp · +
rps12 · MW420935.1 · 137,529–137,757 bp · +
rps12 · MW420935.1 · 138,294–138,319 bp · +
psbB · MW420935.1 · 72,404–73,930 bp · +
psbT · MW420935.1 · 74,122–74,229 bp · +
psbH · MW420935.1 · 74,525–74,746 bp · +
petB · MW420935.1 · 74,871–76,239 bp · +
petD · MW420935.1 · 76,422–77,628 bp · +
ycf2 · MW420935.1 · 86,000–92,800 bp · +
ycf15 · MW420935.1 · 92,876–93,139 bp · +
trnV-GAC · MW420935.1 · 99,391–99,462 bp · +
rrn16 · MW420935.1 · 99,689–101,179 bp · +
trnI-GAU · MW420935.1 · 101,478–102,497 bp · +
trnA-UGC · MW420935.1 · 102,563–103,449 bp · +
rrn23 · MW420935.1 · 103,612–106,423 bp · +
rrn4.5 · MW420935.1 · 106,522–106,624 bp · +
rrn5 · MW420935.1 · 106,872–106,992 bp · +
trnR-ACC · MW420935.1 · 107,227–107,300 bp · +
trnN-GUU · MW420935.1 · 107,849–107,920 bp · +
rpl32 · MW420935.1 · 111,565–111,741 bp · +
trnL-UAG · MW420935.1 · 112,183–112,262 bp · +
ccsA · MW420935.1 · 112,351–113,325 bp · +
trnN-GUU · MW420935.1 · 127,428–127,499 bp · +
rps7 · MW420935.1 · 138,373–138,840 bp · +
ndhB · MW420935.1 · 139,115–141,326 bp · +
trnL-CAA · MW420935.1 · 141,869–141,949 bp · +
trnI-CAU · MW420935.1 · 149,437–149,510 bp · +
rpl23 · MW420935.1 · 149,670–149,951 bp · +
rpl2 · MW420935.1 · 149,970–151,451 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pinnatifida subsp. pichleri
ANNOTATED PLASTOME
MW420935.1
151,551 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37888 75776 113663 151551 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rps12 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
138 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4251 2574 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5158 6318 1161 Locate
trnQ-UUC gene − 7054 7125 72 Locate
psbK gene + 7450 7635 186 Locate
psbI gene + 8025 8135 111 Locate
trnS-GCU gene − 8254 8341 88 Locate
trnG-UCC gene + 9042 9798 757 Locate
trnR-UCU gene + 9973 10044 72 Locate
atpA gene − 10141 11664 1524 Locate
atpF gene − 11746 12975 1230 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14564 15307 744 Locate
rps2 gene − 15653 16363 711 Locate
rpoC2 gene − 16579 20784 4206 Locate
rpoC1 gene − 20939 23775 2837 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28175 28245 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30043 30147 105 Locate
trnD-GUC gene − 30673 30746 74 Locate
trnY-GUA gene − 30860 30943 84 Locate
trnE-UUC gene − 31003 31075 73 Locate
trnT-GGU gene + 31651 31722 72 Locate
psbD gene + 33028 34089 1062 Locate
psbC gene + 34037 35458 1422 Locate
trnS-UCA gene − 35693 35785 93 Locate
psbZ gene + 36101 36289 189 Locate
trnG-GCC gene + 36567 36637 71 Locate
trnfM-CAU gene − 36784 36857 74 Locate
rps14 gene − 37012 37314 303 Locate
psaB gene − 37443 39647 2205 Locate
psaA gene − 39673 41925 2253 Locate
ycf3 gene − 42628 44549 1922 Locate
trnS-GGA gene + 45432 45518 87 Locate
rps4 gene − 45794 46399 606 Locate
trnT-UGU gene − 46741 46813 73 Locate
trnL-UAA gene + 47494 48054 561 Locate
trnF-GAA gene + 48357 48429 73 Locate
ndhJ gene − 49071 49547 477 Locate
ndhK gene − 49656 50333 678 Locate
ndhC gene − 50387 50749 363 Locate
trnV-UAC gene − 51735 52387 653 Locate
trnM-CAU gene + 52576 52648 73 Locate
atpE gene − 52842 53243 402 Locate
atpB gene − 53240 54736 1497 Locate
rbcL gene + 55498 56940 1443 Locate
accD gene + 57655 59133 1479 Locate
psaI gene + 59680 59790 111 Locate
ycf4 gene + 60224 60778 555 Locate
cemA gene + 61467 62126 660 Locate
petA gene + 62333 63295 963 Locate
psbJ gene − 64305 64427 123 Locate
psbL gene − 64561 64677 117 Locate
psbF gene − 64701 64820 120 Locate
psbE gene − 64835 65086 252 Locate
petL gene + 65964 66059 96 Locate
petG gene + 66235 66348 114 Locate
trnW-CCA gene − 66467 66540 74 Locate
trnP-UGG gene − 66710 66783 74 Locate
psaJ gene + 67055 67189 135 Locate
rpl33 gene + 67673 67873 201 Locate
rps18 gene + 68048 68353 306 Locate
rpl20 gene − 68588 68974 387 Locate
rps12 gene − 69754 69882 129 Locate
rps12 CDS − 69757 69882 126 Locate
clpP gene − 70024 71952 1929 Locate
psbB gene + 72404 73930 1527 Locate
psbT gene + 74122 74229 108 Locate
psbN gene − 74290 74421 132 Locate
psbH gene + 74525 74746 222 Locate
petB gene + 74871 76239 1369 Locate
petD gene + 76422 77628 1207 Locate
rpoA gene − 77791 78783 993 Locate
rps11 gene − 78855 79271 417 Locate
rpl36 gene − 79373 79486 114 Locate
infA gene − 79581 79814 234 Locate
rps8 gene − 79938 80348 411 Locate
rpl14 gene − 80501 80869 369 Locate
rpl16 gene − 80996 82229 1234 Locate
rps3 gene − 82385 83047 663 Locate
rpl22 gene − 83049 83504 456 Locate
rps19 gene − 83564 83842 279 Locate
rpl2 gene − 83897 85378 1482 Locate
rpl23 gene − 85397 85678 282 Locate
trnI-CAU gene − 85838 85911 74 Locate
ycf2 gene + 86000 92800 6801 Locate
ycf15 gene + 92876 93139 264 Locate
trnL-CAA gene − 93399 93479 81 Locate
ndhB gene − 94022 96233 2212 Locate
rps7 gene − 96508 96975 468 Locate
rps12 CDS − 97029 97054 26 Locate
rps12 gene − 97029 97819 791 Locate
rps12 CDS − 97591 97819 229 Locate
trnV-GAC gene + 99391 99462 72 Locate
rrn16 gene + 99689 101179 1491 Locate
trnI-GAU gene + 101478 102497 1020 Locate
trnA-UGC gene + 102563 103449 887 Locate
rrn23 gene + 103612 106423 2812 Locate
rrn4.5 gene + 106522 106624 103 Locate
rrn5 gene + 106872 106992 121 Locate
trnR-ACC gene + 107227 107300 74 Locate
trnN-GUU gene + 107849 107920 72 Locate
ndhF gene − 108977 111238 2262 Locate
rpl32 gene + 111565 111741 177 Locate
trnL-UAG gene + 112183 112262 80 Locate
ccsA gene + 112351 113325 975 Locate
ndhD gene − 113565 115085 1521 Locate
psaC gene − 115195 115440 246 Locate
ndhE gene − 115696 116001 306 Locate
ndhG gene − 116218 116748 531 Locate
ndhI gene − 117116 117616 501 Locate
ndhA gene − 117702 119823 2122 Locate
ndhH gene − 119825 121006 1182 Locate
rps15 gene − 121103 121375 273 Locate
ycf1 gene − 121573 127098 5526 Locate
trnN-GUU gene + 127428 127499 72 Locate
trnR-ACC gene − 128048 128121 74 Locate
rrn5 gene − 128356 128476 121 Locate
rrn4.5 gene − 128724 128826 103 Locate
rrn23 gene − 128925 131736 2812 Locate
trnA-UGC gene − 131899 132785 887 Locate
trnI-GAU gene − 132851 133870 1020 Locate
rrn16 gene − 134169 135659 1491 Locate
trnV-GAC gene − 135886 135957 72 Locate
rps12 CDS + 137529 137757 229 Locate
rps12 gene + 137529 138319 791 Locate
rps12 CDS + 138294 138319 26 Locate
rps7 gene + 138373 138840 468 Locate
ndhB gene + 139115 141326 2212 Locate
trnL-CAA gene + 141869 141949 81 Locate
ycf15 gene − 142209 142472 264 Locate
ycf2 gene − 142548 149348 6801 Locate
trnI-CAU gene + 149437 149510 74 Locate
rpl23 gene + 149670 149951 282 Locate
rpl2 gene + 149970 151451 1482 Locate
Status Available
Accession MW420935.1
Length 151,551 bp
GC content 38.4%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 31 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources