Scutellaria rubicunda chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420939.1 · 4–77 bp · −
psbA · MW420939.1 · 394–1,452 bp · −
trnK-UUU · MW420939.1 · 1,698–4,283 bp · −
matK · MW420939.1 · 1,983–3,527 bp · −
rps16 · MW420939.1 · 5,196–6,376 bp · −
trnQ-UUC · MW420939.1 · 7,488–7,559 bp · −
trnS-GCU · MW420939.1 · 8,686–8,773 bp · −
atpA · MW420939.1 · 10,558–12,081 bp · −
atpF · MW420939.1 · 12,166–13,394 bp · −
atpH · MW420939.1 · 13,766–14,011 bp · −
atpI · MW420939.1 · 15,005–15,748 bp · −
rps2 · MW420939.1 · 16,096–16,806 bp · −
rpoC2 · MW420939.1 · 17,024–21,223 bp · −
rpoC1 · MW420939.1 · 21,378–24,196 bp · −
rpoB · MW420939.1 · 24,223–27,435 bp · −
psbM · MW420939.1 · 30,506–30,619 bp · −
trnD-GUC · MW420939.1 · 31,152–31,225 bp · −
trnY-GUA · MW420939.1 · 31,339–31,422 bp · −
trnE-UUC · MW420939.1 · 31,482–31,554 bp · −
trnS-UCA · MW420939.1 · 36,178–36,270 bp · −
trnfM-CAU · MW420939.1 · 37,267–37,340 bp · −
rps14 · MW420939.1 · 37,490–37,792 bp · −
psaB · MW420939.1 · 37,923–40,127 bp · −
psaA · MW420939.1 · 40,153–42,405 bp · −
ycf3 · MW420939.1 · 43,109–45,033 bp · −
rps4 · MW420939.1 · 46,278–46,883 bp · −
trnT-UGU · MW420939.1 · 47,229–47,301 bp · −
ndhJ · MW420939.1 · 49,564–50,040 bp · −
ndhK · MW420939.1 · 50,145–50,822 bp · −
ndhC · MW420939.1 · 50,875–51,237 bp · −
trnV-UAC · MW420939.1 · 52,218–52,876 bp · −
atpE · MW420939.1 · 53,338–53,739 bp · −
atpB · MW420939.1 · 53,736–55,232 bp · −
psbJ · MW420939.1 · 64,401–64,523 bp · −
psbL · MW420939.1 · 64,657–64,773 bp · −
psbF · MW420939.1 · 64,797–64,916 bp · −
psbE · MW420939.1 · 64,931–65,182 bp · −
trnW-CCA · MW420939.1 · 66,599–66,672 bp · −
trnP-UGG · MW420939.1 · 66,842–66,915 bp · −
rpl20 · MW420939.1 · 68,716–69,102 bp · −
rps12 · MW420939.1 · 69,887–70,012 bp · −
rps12 · MW420939.1 · 97,198–97,988 bp · −
clpP · MW420939.1 · 70,154–72,091 bp · −
psbN · MW420939.1 · 74,418–74,549 bp · −
rpoA · MW420939.1 · 77,930–78,943 bp · −
rps11 · MW420939.1 · 79,015–79,431 bp · −
rpl36 · MW420939.1 · 79,533–79,646 bp · −
infA · MW420939.1 · 79,742–79,975 bp · −
rps8 · MW420939.1 · 80,098–80,508 bp · −
rpl14 · MW420939.1 · 80,666–81,034 bp · −
rpl16 · MW420939.1 · 81,161–82,391 bp · −
rps3 · MW420939.1 · 82,546–83,208 bp · −
rpl22 · MW420939.1 · 83,210–83,665 bp · −
rps19 · MW420939.1 · 83,721–83,999 bp · −
rpl2 · MW420939.1 · 84,055–85,537 bp · −
rpl23 · MW420939.1 · 85,556–85,837 bp · −
trnI-CAU · MW420939.1 · 85,997–86,070 bp · −
trnL-CAA · MW420939.1 · 93,568–93,648 bp · −
ndhB · MW420939.1 · 94,191–96,402 bp · −
rps7 · MW420939.1 · 96,677–97,144 bp · −
ndhF · MW420939.1 · 109,179–111,419 bp · −
ndhD · MW420939.1 · 113,924–115,453 bp · −
psaC · MW420939.1 · 115,560–115,805 bp · −
ndhE · MW420939.1 · 116,061–116,366 bp · −
ndhG · MW420939.1 · 116,590–117,120 bp · −
ndhI · MW420939.1 · 117,469–117,969 bp · −
ndhA · MW420939.1 · 118,050–120,159 bp · −
ndhH · MW420939.1 · 120,161–121,342 bp · −
rps15 · MW420939.1 · 121,439–121,711 bp · −
ycf1 · MW420939.1 · 121,979–127,543 bp · −
trnR-ACC · MW420939.1 · 128,500–128,573 bp · −
rrn5 · MW420939.1 · 128,808–128,928 bp · −
rrn4.5 · MW420939.1 · 129,176–129,278 bp · −
rrn23 · MW420939.1 · 129,377–132,188 bp · −
trnA-UGC · MW420939.1 · 132,358–133,248 bp · −
trnI-GAU · MW420939.1 · 133,314–134,331 bp · −
rrn16 · MW420939.1 · 134,630–136,120 bp · −
trnV-GAC · MW420939.1 · 136,343–136,414 bp · −
ycf15 · MW420939.1 · 142,668–142,865 bp · −
ycf2 · MW420939.1 · 143,007–149,816 bp · −
psbK · MW420939.1 · 7,884–8,069 bp · +
psbI · MW420939.1 · 8,477–8,587 bp · +
trnG-UCC · MW420939.1 · 9,470–10,224 bp · +
trnR-UCU · MW420939.1 · 10,390–10,461 bp · +
trnC-GCA · MW420939.1 · 28,612–28,682 bp · +
petN · MW420939.1 · 29,418–29,507 bp · +
trnT-GGU · MW420939.1 · 32,126–32,197 bp · +
psbD · MW420939.1 · 33,514–34,575 bp · +
psbC · MW420939.1 · 34,523–35,944 bp · +
psbZ · MW420939.1 · 36,590–36,778 bp · +
trnG-GCC · MW420939.1 · 37,051–37,121 bp · +
trnS-GGA · MW420939.1 · 45,908–45,994 bp · +
trnL-UAA · MW420939.1 · 47,969–48,536 bp · +
trnF-GAA · MW420939.1 · 48,841–48,913 bp · +
trnM-CAU · MW420939.1 · 53,057–53,129 bp · +
rbcL · MW420939.1 · 56,001–57,443 bp · +
accD · MW420939.1 · 58,169–59,659 bp · +
psaI · MW420939.1 · 59,897–60,007 bp · +
ycf4 · MW420939.1 · 60,441–60,995 bp · +
cemA · MW420939.1 · 61,549–62,208 bp · +
petA · MW420939.1 · 62,415–63,377 bp · +
petL · MW420939.1 · 66,106–66,201 bp · +
petG · MW420939.1 · 66,377–66,490 bp · +
psaJ · MW420939.1 · 67,187–67,321 bp · +
rpl33 · MW420939.1 · 67,795–67,995 bp · +
rps18 · MW420939.1 · 68,170–68,475 bp · +
rps12 · MW420939.1 · 137,987–138,777 bp · +
psbB · MW420939.1 · 72,545–74,071 bp · +
psbT · MW420939.1 · 74,250–74,357 bp · +
psbH · MW420939.1 · 74,653–74,874 bp · +
petB · MW420939.1 · 74,999–76,367 bp · +
petD · MW420939.1 · 76,556–77,767 bp · +
ycf2 · MW420939.1 · 86,159–92,968 bp · +
ycf15 · MW420939.1 · 93,110–93,307 bp · +
trnV-GAC · MW420939.1 · 99,561–99,632 bp · +
rrn16 · MW420939.1 · 99,855–101,345 bp · +
trnI-GAU · MW420939.1 · 101,644–102,661 bp · +
trnA-UGC · MW420939.1 · 102,727–103,617 bp · +
rrn23 · MW420939.1 · 103,787–106,598 bp · +
rrn4.5 · MW420939.1 · 106,697–106,799 bp · +
rrn5 · MW420939.1 · 107,047–107,167 bp · +
trnR-ACC · MW420939.1 · 107,402–107,475 bp · +
trnN-GUU · MW420939.1 · 108,031–108,102 bp · +
rpl32 · MW420939.1 · 111,936–112,112 bp · +
trnL-UAG · MW420939.1 · 112,547–112,626 bp · +
ccsA · MW420939.1 · 112,712–113,686 bp · +
trnN-GUU · MW420939.1 · 127,873–127,944 bp · +
rps7 · MW420939.1 · 138,831–139,298 bp · +
ndhB · MW420939.1 · 139,573–141,784 bp · +
trnL-CAA · MW420939.1 · 142,327–142,407 bp · +
trnI-CAU · MW420939.1 · 149,905–149,978 bp · +
rpl23 · MW420939.1 · 150,138–150,419 bp · +
rpl2 · MW420939.1 · 150,438–151,920 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria rubicunda
ANNOTATED PLASTOME
MW420939.1
152,016 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38004 76008 114012 152016 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1698 4283 2586 Locate
matK gene − 1983 3527 1545 Locate
rps16 gene − 5196 6376 1181 Locate
trnQ-UUC gene − 7488 7559 72 Locate
psbK gene + 7884 8069 186 Locate
psbI gene + 8477 8587 111 Locate
trnS-GCU gene − 8686 8773 88 Locate
trnG-UCC gene + 9470 10224 755 Locate
trnR-UCU gene + 10390 10461 72 Locate
atpA gene − 10558 12081 1524 Locate
atpF gene − 12166 13394 1229 Locate
atpH gene − 13766 14011 246 Locate
atpI gene − 15005 15748 744 Locate
rps2 gene − 16096 16806 711 Locate
rpoC2 gene − 17024 21223 4200 Locate
rpoC1 gene − 21378 24196 2819 Locate
rpoB gene − 24223 27435 3213 Locate
trnC-GCA gene + 28612 28682 71 Locate
petN gene + 29418 29507 90 Locate
psbM gene − 30506 30619 114 Locate
trnD-GUC gene − 31152 31225 74 Locate
trnY-GUA gene − 31339 31422 84 Locate
trnE-UUC gene − 31482 31554 73 Locate
trnT-GGU gene + 32126 32197 72 Locate
psbD gene + 33514 34575 1062 Locate
psbC gene + 34523 35944 1422 Locate
trnS-UCA gene − 36178 36270 93 Locate
psbZ gene + 36590 36778 189 Locate
trnG-GCC gene + 37051 37121 71 Locate
trnfM-CAU gene − 37267 37340 74 Locate
rps14 gene − 37490 37792 303 Locate
psaB gene − 37923 40127 2205 Locate
psaA gene − 40153 42405 2253 Locate
ycf3 gene − 43109 45033 1925 Locate
trnS-GGA gene + 45908 45994 87 Locate
rps4 gene − 46278 46883 606 Locate
trnT-UGU gene − 47229 47301 73 Locate
trnL-UAA gene + 47969 48536 568 Locate
trnF-GAA gene + 48841 48913 73 Locate
ndhJ gene − 49564 50040 477 Locate
ndhK gene − 50145 50822 678 Locate
ndhC gene − 50875 51237 363 Locate
trnV-UAC gene − 52218 52876 659 Locate
trnM-CAU gene + 53057 53129 73 Locate
atpE gene − 53338 53739 402 Locate
atpB gene − 53736 55232 1497 Locate
rbcL gene + 56001 57443 1443 Locate
accD gene + 58169 59659 1491 Locate
psaI gene + 59897 60007 111 Locate
ycf4 gene + 60441 60995 555 Locate
cemA gene + 61549 62208 660 Locate
petA gene + 62415 63377 963 Locate
psbJ gene − 64401 64523 123 Locate
psbL gene − 64657 64773 117 Locate
psbF gene − 64797 64916 120 Locate
psbE gene − 64931 65182 252 Locate
petL gene + 66106 66201 96 Locate
petG gene + 66377 66490 114 Locate
trnW-CCA gene − 66599 66672 74 Locate
trnP-UGG gene − 66842 66915 74 Locate
psaJ gene + 67187 67321 135 Locate
rpl33 gene + 67795 67995 201 Locate
rps18 gene + 68170 68475 306 Locate
rpl20 gene − 68716 69102 387 Locate
rps12 gene − 69887 70012 126 Locate
clpP gene − 70154 72091 1938 Locate
psbB gene + 72545 74071 1527 Locate
psbT gene + 74250 74357 108 Locate
psbN gene − 74418 74549 132 Locate
psbH gene + 74653 74874 222 Locate
petB gene + 74999 76367 1369 Locate
petD gene + 76556 77767 1212 Locate
rpoA gene − 77930 78943 1014 Locate
rps11 gene − 79015 79431 417 Locate
rpl36 gene − 79533 79646 114 Locate
infA gene − 79742 79975 234 Locate
rps8 gene − 80098 80508 411 Locate
rpl14 gene − 80666 81034 369 Locate
rpl16 gene − 81161 82391 1231 Locate
rps3 gene − 82546 83208 663 Locate
rpl22 gene − 83210 83665 456 Locate
rps19 gene − 83721 83999 279 Locate
rpl2 gene − 84055 85537 1483 Locate
rpl23 gene − 85556 85837 282 Locate
trnI-CAU gene − 85997 86070 74 Locate
ycf2 gene + 86159 92968 6810 Locate
ycf15 gene + 93110 93307 198 Locate
trnL-CAA gene − 93568 93648 81 Locate
ndhB gene − 94191 96402 2212 Locate
rps7 gene − 96677 97144 468 Locate
rps12 gene − 97198 97988 791 Locate
trnV-GAC gene + 99561 99632 72 Locate
rrn16 gene + 99855 101345 1491 Locate
trnI-GAU gene + 101644 102661 1018 Locate
trnA-UGC gene + 102727 103617 891 Locate
rrn23 gene + 103787 106598 2812 Locate
rrn4.5 gene + 106697 106799 103 Locate
rrn5 gene + 107047 107167 121 Locate
trnR-ACC gene + 107402 107475 74 Locate
trnN-GUU gene + 108031 108102 72 Locate
ndhF gene − 109179 111419 2241 Locate
rpl32 gene + 111936 112112 177 Locate
trnL-UAG gene + 112547 112626 80 Locate
ccsA gene + 112712 113686 975 Locate
ndhD gene − 113924 115453 1530 Locate
psaC gene − 115560 115805 246 Locate
ndhE gene − 116061 116366 306 Locate
ndhG gene − 116590 117120 531 Locate
ndhI gene − 117469 117969 501 Locate
ndhA gene − 118050 120159 2110 Locate
ndhH gene − 120161 121342 1182 Locate
rps15 gene − 121439 121711 273 Locate
ycf1 gene − 121979 127543 5565 Locate
trnN-GUU gene + 127873 127944 72 Locate
trnR-ACC gene − 128500 128573 74 Locate
rrn5 gene − 128808 128928 121 Locate
rrn4.5 gene − 129176 129278 103 Locate
rrn23 gene − 129377 132188 2812 Locate
trnA-UGC gene − 132358 133248 891 Locate
trnI-GAU gene − 133314 134331 1018 Locate
rrn16 gene − 134630 136120 1491 Locate
trnV-GAC gene − 136343 136414 72 Locate
rps12 gene + 137987 138777 791 Locate
rps7 gene + 138831 139298 468 Locate
ndhB gene + 139573 141784 2212 Locate
trnL-CAA gene + 142327 142407 81 Locate
ycf15 gene − 142668 142865 198 Locate
ycf2 gene − 143007 149816 6810 Locate
trnI-CAU gene + 149905 149978 74 Locate
rpl23 gene + 150138 150419 282 Locate
rpl2 gene + 150438 151920 1483 Locate
Status Available
Accession MW420939.1
Length 152,016 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources