Coordinate-aware organelle record

Scutellaria rubicunda chloroplast genome

Available MW420939.1 152,016 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	3	77	74
psbA	gene	photosystem-ii	−	393	1452	1059
trnK-UUU	gene	translation-rna	−	1697	4283	2586
matK	gene	other	−	1982	3527	1545
rps16	gene	ribosomal-protein	−	5195	6376	1181
trnQ-UUC	gene	translation-rna	−	7487	7559	72
psbK	gene	photosystem-ii	+	7883	8069	186
psbI	gene	photosystem-ii	+	8476	8587	111
trnS-GCU	gene	translation-rna	−	8685	8773	88
trnG-UCC	gene	translation-rna	+	9469	10224	755
trnR-UCU	gene	translation-rna	+	10389	10461	72
atpA	gene	atp-synthase	−	10557	12081	1524
atpF	gene	atp-synthase	−	12165	13394	1229
atpH	gene	atp-synthase	−	13765	14011	246
atpI	gene	atp-synthase	−	15004	15748	744
rps2	gene	ribosomal-protein	−	16095	16806	711
rpoC2	gene	rna-polymerase	−	17023	21223	4200
rpoC1	gene	rna-polymerase	−	21377	24196	2819
rpoB	gene	rna-polymerase	−	24222	27435	3213
trnC-GCA	gene	translation-rna	+	28611	28682	71
petN	gene	cytochrome	+	29417	29507	90
psbM	gene	photosystem-ii	−	30505	30619	114
trnD-GUC	gene	translation-rna	−	31151	31225	74
trnY-GUA	gene	translation-rna	−	31338	31422	84
trnE-UUC	gene	translation-rna	−	31481	31554	73
trnT-GGU	gene	translation-rna	+	32125	32197	72
psbD	gene	photosystem-ii	+	33513	34575	1062
psbC	gene	photosystem-ii	+	34522	35944	1422
trnS-UCA	gene	translation-rna	−	36177	36270	93
psbZ	gene	photosystem-ii	+	36589	36778	189
trnG-GCC	gene	translation-rna	+	37050	37121	71
trnfM-CAU	gene	translation-rna	−	37266	37340	74
rps14	gene	ribosomal-protein	−	37489	37792	303
psaB	gene	photosystem-i	−	37922	40127	2205
psaA	gene	photosystem-i	−	40152	42405	2253
ycf3	gene	other	−	43108	45033	1925
trnS-GGA	gene	translation-rna	+	45907	45994	87
rps4	gene	ribosomal-protein	−	46277	46883	606
trnT-UGU	gene	translation-rna	−	47228	47301	73
trnL-UAA	gene	translation-rna	+	47968	48536	568
trnF-GAA	gene	translation-rna	+	48840	48913	73
ndhJ	gene	nad-dehydrogenase	−	49563	50040	477
ndhK	gene	nad-dehydrogenase	−	50144	50822	678
ndhC	gene	nad-dehydrogenase	−	50874	51237	363
trnV-UAC	gene	translation-rna	−	52217	52876	659
trnM-CAU	gene	translation-rna	+	53056	53129	73
atpE	gene	atp-synthase	−	53337	53739	402
atpB	gene	atp-synthase	−	53735	55232	1497
rbcL	gene	other	+	56000	57443	1443
accD	gene	other	+	58168	59659	1491
psaI	gene	photosystem-i	+	59896	60007	111
ycf4	gene	other	+	60440	60995	555
cemA	gene	other	+	61548	62208	660
petA	gene	cytochrome	+	62414	63377	963
psbJ	gene	photosystem-ii	−	64400	64523	123
psbL	gene	photosystem-ii	−	64656	64773	117
psbF	gene	photosystem-ii	−	64796	64916	120
psbE	gene	photosystem-ii	−	64930	65182	252
petL	gene	cytochrome	+	66105	66201	96
petG	gene	cytochrome	+	66376	66490	114
trnW-CCA	gene	translation-rna	−	66598	66672	74
trnP-UGG	gene	translation-rna	−	66841	66915	74
psaJ	gene	photosystem-i	+	67186	67321	135
rpl33	gene	ribosomal-protein	+	67794	67995	201
rps18	gene	ribosomal-protein	+	68169	68475	306
rpl20	gene	ribosomal-protein	−	68715	69102	387
rps12	gene	ribosomal-protein	−	69886	97988	28102
rps12	gene	ribosomal-protein	+	69886	138777	68891
clpP	gene	other	−	70153	72091	1938
psbB	gene	photosystem-ii	+	72544	74071	1527
psbT	gene	photosystem-ii	+	74249	74357	108
psbN	gene	photosystem-ii	−	74417	74549	132
psbH	gene	photosystem-ii	+	74652	74874	222
petB	gene	cytochrome	+	74998	76367	1369
petD	gene	cytochrome	+	76555	77767	1212
rpoA	gene	rna-polymerase	−	77929	78943	1014
rps11	gene	ribosomal-protein	−	79014	79431	417
rpl36	gene	ribosomal-protein	−	79532	79646	114
infA	gene	other	−	79741	79975	234
rps8	gene	ribosomal-protein	−	80097	80508	411
rpl14	gene	ribosomal-protein	−	80665	81034	369
rpl16	gene	ribosomal-protein	−	81160	82391	1231
rps3	gene	ribosomal-protein	−	82545	83208	663
rpl22	gene	ribosomal-protein	−	83209	83665	456
rps19	gene	ribosomal-protein	−	83720	83999	279
rpl2	gene	ribosomal-protein	−	84054	85537	1483
rpl23	gene	ribosomal-protein	−	85555	85837	282
trnI-CAU	gene	translation-rna	−	85996	86070	74
ycf2	gene	other	+	86158	92968	6810
ycf15	gene	other	+	93109	93307	198
trnL-CAA	gene	translation-rna	−	93567	93648	81
ndhB	gene	nad-dehydrogenase	−	94190	96402	2212
rps7	gene	ribosomal-protein	−	96676	97144	468
trnV-GAC	gene	translation-rna	+	99560	99632	72
rrn16	gene	ribosomal-rna	+	99854	101345	1491
trnI-GAU	gene	translation-rna	+	101643	102661	1018
trnA-UGC	gene	translation-rna	+	102726	103617	891
rrn23	gene	ribosomal-rna	+	103786	106598	2812
rrn4.5	gene	ribosomal-rna	+	106696	106799	103
rrn5	gene	ribosomal-rna	+	107046	107167	121
trnR-ACC	gene	translation-rna	+	107401	107475	74
trnN-GUU	gene	translation-rna	+	108030	108102	72
ndhF	gene	nad-dehydrogenase	−	109178	111419	2241
rpl32	gene	ribosomal-protein	+	111935	112112	177
trnL-UAG	gene	translation-rna	+	112546	112626	80
ccsA	gene	other	+	112711	113686	975
ndhD	gene	nad-dehydrogenase	−	113923	115453	1530
psaC	gene	photosystem-i	−	115559	115805	246
ndhE	gene	nad-dehydrogenase	−	116060	116366	306
ndhG	gene	nad-dehydrogenase	−	116589	117120	531
ndhI	gene	nad-dehydrogenase	−	117468	117969	501
ndhA	gene	nad-dehydrogenase	−	118049	120159	2110
ndhH	gene	nad-dehydrogenase	−	120160	121342	1182
rps15	gene	ribosomal-protein	−	121438	121711	273
ycf1	gene	other	−	121978	127543	5565
trnN-GUU	gene	translation-rna	+	127872	127944	72
trnR-ACC	gene	translation-rna	−	128499	128573	74
rrn5	gene	ribosomal-rna	−	128807	128928	121
rrn4.5	gene	ribosomal-rna	−	129175	129278	103
rrn23	gene	ribosomal-rna	−	129376	132188	2812
trnA-UGC	gene	translation-rna	−	132357	133248	891
trnI-GAU	gene	translation-rna	−	133313	134331	1018
rrn16	gene	ribosomal-rna	−	134629	136120	1491
trnV-GAC	gene	translation-rna	−	136342	136414	72
rps7	gene	ribosomal-protein	+	138830	139298	468
ndhB	gene	nad-dehydrogenase	+	139572	141784	2212
trnL-CAA	gene	translation-rna	+	142326	142407	81
ycf15	gene	other	−	142667	142865	198
ycf2	gene	other	−	143006	149816	6810
trnI-CAU	gene	translation-rna	+	149904	149978	74
rpl23	gene	ribosomal-protein	+	150137	150419	282
rpl2	gene	ribosomal-protein	+	150437	151920	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMW420939.1DNA · accDMW420939DNA · atpBMW420939DNA · matKMW420939DNA · ndhFMW420939DNA · psbAMW420939DNA · rbcLMW420939DNA · rps12MW420939DNA · ycf1MW420939